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Aliases for TXNDC12-AS1 Gene

Subcategory (RNA class) for TXNDC12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TXNDC12-AS1 Gene

  • TXNDC12 Antisense RNA 1 2 3 5

External Ids for TXNDC12-AS1 Gene

Previous GeneCards Identifiers for TXNDC12-AS1 Gene

  • GC01P052517
  • GC00U936067

Summaries for TXNDC12-AS1 Gene

GeneCards Summary for TXNDC12-AS1 Gene

TXNDC12-AS1 (TXNDC12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TXNDC12-AS1 Gene

Genomics for TXNDC12-AS1 Gene

Regulatory Elements for TXNDC12-AS1 Gene

Enhancers for TXNDC12-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F051874 1.5 FANTOM5 ENCODE 16.2 -173.5 -173452 5.3 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ENSG00000266993 ZCCHC11 GAPDHP51 SLC25A6P3 TXNDC12-AS1 TXNDC12 C1orf185 CFL1P2 KTI12 CC2D1B
GH01F052550 1.4 FANTOM5 ENCODE 16.2 +502.0 501981 5.6 HDGF CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF766 ENSG00000228838 CC2D1B GPX7 LOC100652967 TXNDC12-AS1 LOC105378729 GAPDHP51 SLC25A6P3 ZCCHC11 MAGOH
GH01F052697 1.1 ENCODE 16.2 +647.2 647232 2.2 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ENSG00000228838 LOC100652967 TXNDC12-AS1 LOC105378729 GAPDHP51 SLC25A6P3 MAGOH ENSG00000272100 ZCCHC11 COA7
GH01F052330 0.9 FANTOM5 10.9 +279.6 279575 0.1 TBP HDAC1 PKNOX1 ATF1 NFRKB ZBTB40 CREM BCLAF1 SMAD5 GTF2B MAGOH PLA2G12AP1 CC2D1B TXNDC12 TXNDC12-AS1 KTI12 GC01M052352 GC01M052353 GC01P052280
GH01F052328 0.7 ENCODE 10.9 +277.9 277866 0.2 MAFG POLR2H ARID1B JUND ZNF316 ATF3 FOS NFE2 MAFK EMSY PLA2G12AP1 CC2D1B TXNDC12-AS1 GC01M052352 GC01M052353 GC01P052280
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TXNDC12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TXNDC12-AS1 Gene

Chromosome:
1
Start:
52,050,918 bp from pter
End:
52,052,683 bp from pter
Size:
1,766 bases
Orientation:
Plus strand

Genomic View for TXNDC12-AS1 Gene

Genes around TXNDC12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TXNDC12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TXNDC12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TXNDC12-AS1 Gene

Proteins for TXNDC12-AS1 Gene

Post-translational modifications for TXNDC12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TXNDC12-AS1 Gene

Domains & Families for TXNDC12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TXNDC12-AS1 Gene

Function for TXNDC12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TXNDC12-AS1 Gene

Localization for TXNDC12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TXNDC12-AS1 Gene

Pathways & Interactions for TXNDC12-AS1 Gene

SuperPathways for TXNDC12-AS1 Gene

No Data Available

Interacting Proteins for TXNDC12-AS1 Gene

Gene Ontology (GO) - Biological Process for TXNDC12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TXNDC12-AS1 Gene

Transcripts for TXNDC12-AS1 Gene

mRNA/cDNA for TXNDC12-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TXNDC12-AS1 Gene

No ASD Table

Relevant External Links for TXNDC12-AS1 Gene

GeneLoc Exon Structure for
TXNDC12-AS1
ECgene alternative splicing isoforms for
TXNDC12-AS1

Expression for TXNDC12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TXNDC12-AS1 Gene

genes like me logo Genes that share expression patterns with TXNDC12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TXNDC12-AS1 Gene

Orthologs for TXNDC12-AS1 Gene

Evolution for TXNDC12-AS1 Gene

ENSEMBL:
Gene Tree for TXNDC12-AS1 (if available)
TreeFam:
Gene Tree for TXNDC12-AS1 (if available)

No data available for Orthologs for TXNDC12-AS1 Gene

Paralogs for TXNDC12-AS1 Gene

No data available for Paralogs for TXNDC12-AS1 Gene

Variants for TXNDC12-AS1 Gene

Sequence variations from dbSNP and Humsavar for TXNDC12-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111965048 -- 52,049,332(+) TGGGC(A/G)TGGTG intron-variant, upstream-variant-2KB
rs112619551 -- 52,052,869(+) CCCAT(C/T)TTGCA intron-variant, downstream-variant-500B
rs113015944 -- 52,048,930(+) TGTCA(A/C)ACCTT intron-variant, upstream-variant-2KB
rs113397841 -- 52,053,006(+) TGGGA(A/G)GCCAA intron-variant, downstream-variant-500B
rs12047841 -- 52,052,492(+) CACGC(A/G)CTCTT intron-variant, nc-transcript-variant

Relevant External Links for TXNDC12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TXNDC12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TXNDC12-AS1 Gene

Disorders for TXNDC12-AS1 Gene

Relevant External Links for TXNDC12-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TXNDC12-AS1

No disorders were found for TXNDC12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TXNDC12-AS1 Gene

Publications for TXNDC12-AS1 Gene

No publications were found for TXNDC12-AS1 Gene.

Products for TXNDC12-AS1 Gene

Sources for TXNDC12-AS1 Gene

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