Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TXNDC12-AS1 Gene

Subcategory (RNA class) for TXNDC12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TXNDC12-AS1 Gene

  • TXNDC12 Antisense RNA 1 2 3 5

External Ids for TXNDC12-AS1 Gene

Previous GeneCards Identifiers for TXNDC12-AS1 Gene

  • GC01P052517
  • GC00U936067

Summaries for TXNDC12-AS1 Gene

GeneCards Summary for TXNDC12-AS1 Gene

TXNDC12-AS1 (TXNDC12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TXNDC12-AS1 Gene

Genomics for TXNDC12-AS1 Gene

Regulatory Elements for TXNDC12-AS1 Gene

Enhancers for TXNDC12-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G052330 1 FANTOM5 10.8 +279.6 279575 0.1 HDAC1 TBP PKNOX1 ATF1 ARNT NFRKB ZBTB40 ELK1 BCLAF1 CREM MAGOH CC2D1B PLA2G12AP1 TXNDC12 TXNDC12-AS1 KTI12 GC01M052352 GC01M052353 GC01P052280
GH01G052328 0.7 ENCODE 10.8 +277.9 277866 0.2 PKNOX1 FOXA2 ZNF316 FOS NFE2 MAFK NFE2L2 SMARCE1 MAFG DPF2 PLA2G12AP1 CC2D1B TXNDC12-AS1 GC01M052353 GC01M052352 GC01P052280
GH01G052053 1.2 ENCODE 0.7 +4.9 4911 4.4 MLX CREB3L1 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 SSRP1 ZNF610 KTI12 ENSG00000223390 TXNDC12 LOC100190934 TTC39A TXNDC12-AS1 GC01M052055
GH01G052037 1 ENCODE 0.4 -12.9 -12907 1.3 FOXA2 MLX ARID4B DMAP1 SLC30A9 KLF7 SP5 ZHX2 MXD4 NFYC ZCCHC11 CC2D1B LINC01562 ENSG00000272100 KTI12 TXNDC12-AS1
GH01G052042 0.3 FANTOM5 0.4 -8.5 -8538 0.2 TXNDC12-AS1 KTI12
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TXNDC12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TXNDC12-AS1 Gene

Chromosome:
1
Start:
52,050,918 bp from pter
End:
52,052,683 bp from pter
Size:
1,766 bases
Orientation:
Plus strand

Genomic View for TXNDC12-AS1 Gene

Genes around TXNDC12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TXNDC12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TXNDC12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TXNDC12-AS1 Gene

Proteins for TXNDC12-AS1 Gene

Post-translational modifications for TXNDC12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TXNDC12-AS1 Gene

Domains & Families for TXNDC12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TXNDC12-AS1 Gene

Function for TXNDC12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TXNDC12-AS1 Gene

Localization for TXNDC12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TXNDC12-AS1 Gene

Pathways & Interactions for TXNDC12-AS1 Gene

SuperPathways for TXNDC12-AS1 Gene

No Data Available

Interacting Proteins for TXNDC12-AS1 Gene

Gene Ontology (GO) - Biological Process for TXNDC12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TXNDC12-AS1 Gene

Drugs & Compounds for TXNDC12-AS1 Gene

No Compound Related Data Available

Transcripts for TXNDC12-AS1 Gene

mRNA/cDNA for TXNDC12-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TXNDC12-AS1 Gene

No ASD Table

Relevant External Links for TXNDC12-AS1 Gene

GeneLoc Exon Structure for
TXNDC12-AS1
ECgene alternative splicing isoforms for
TXNDC12-AS1

Expression for TXNDC12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TXNDC12-AS1 Gene

genes like me logo Genes that share expression patterns with TXNDC12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TXNDC12-AS1 Gene

Orthologs for TXNDC12-AS1 Gene

Evolution for TXNDC12-AS1 Gene

ENSEMBL:
Gene Tree for TXNDC12-AS1 (if available)
TreeFam:
Gene Tree for TXNDC12-AS1 (if available)

No data available for Orthologs for TXNDC12-AS1 Gene

Paralogs for TXNDC12-AS1 Gene

No data available for Paralogs for TXNDC12-AS1 Gene

Variants for TXNDC12-AS1 Gene

Sequence variations from dbSNP and Humsavar for TXNDC12-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1001059794 -- 52,051,501(+) CTCCC(A/G)AGTAG intron-variant
rs1001489456 -- 52,051,741(+) ATGAA(A/C)ACAGT intron-variant
rs1002092152 -- 52,050,157(+) ACGAA(C/T)GCAGC intron-variant, upstream-variant-2KB
rs1004144937 -- 52,051,732(+) TTCTT(C/G)TTAAT intron-variant
rs1005139073 -- 52,050,410(+) CATCA(C/G)CAACT intron-variant, upstream-variant-2KB

Relevant External Links for TXNDC12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TXNDC12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TXNDC12-AS1 Gene

Disorders for TXNDC12-AS1 Gene

Relevant External Links for TXNDC12-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TXNDC12-AS1

No disorders were found for TXNDC12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TXNDC12-AS1 Gene

Publications for TXNDC12-AS1 Gene

No publications were found for TXNDC12-AS1 Gene.

Products for TXNDC12-AS1 Gene

Sources for TXNDC12-AS1 Gene

Content
Loading form....