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Aliases for TXNDC12-AS1 Gene

Subcategory (RNA class) for TXNDC12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TXNDC12-AS1 Gene

  • TXNDC12 Antisense RNA 1 2 3 5

External Ids for TXNDC12-AS1 Gene

Previous GeneCards Identifiers for TXNDC12-AS1 Gene

  • GC01P052517
  • GC00U936067

Summaries for TXNDC12-AS1 Gene

GeneCards Summary for TXNDC12-AS1 Gene

TXNDC12-AS1 (TXNDC12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TXNDC12-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TXNDC12-AS1 Gene

Genomics for TXNDC12-AS1 Gene

GeneHancer (GH) Regulatory Elements for TXNDC12-AS1 Gene

Promoters and enhancers for TXNDC12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I052330 Enhancer 0.9 FANTOM5 10.9 +279.6 279574 0.1 HDAC1 PKNOX1 ATF1 ARNT NFRKB ZBTB40 POLR2B E2F8 ATF7 CREM MAGOH CC2D1B PLA2G12AP1 TXNDC12 TXNDC12-AS1 KTI12 GC01M052352 GC01M052353 GC01P052280 ZFYVE9
GH01I052328 Enhancer 0.6 ENCODE 10.9 +277.9 277866 0.2 SMARCE1 PKNOX1 FOXA2 MAFG DPF2 MAFF ZNF316 SMARCA4 NFE2 FOS CC2D1B PLA2G12AP1 TXNDC12-AS1 GC01M052352 GC01M052353 GC01P052280 ZFYVE9
GH01I052053 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.8 +4.9 4911 4.4 CLOCK MLX DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC SSRP1 TXNDC12 BTF3L4 GC01M052055 PIR60864 LOC100190934 ENSG00000230953 ZCCHC11 KTI12 ENSG00000223390 ZFYVE9
GH01I052037 Enhancer 0.9 ENCODE 0.4 -12.9 -12907 1.3 FOXA2 MLX ARID4B DMAP1 SLC30A9 RXRA SP5 NFYC ZHX2 MXD4 CC2D1B ENSG00000223390 KTI12 TXNDC12-AS1 TXNDC12
GH01I052042 Enhancer 0.2 FANTOM5 0.4 -8.5 -8537 0.2 ENSG00000223390 KTI12 TXNDC12-AS1 TXNDC12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TXNDC12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TXNDC12-AS1 Gene

Genomic Locations for TXNDC12-AS1 Gene
chr1:52,050,918-52,052,683
(GRCh38/hg38)
Size:
1,766 bases
Orientation:
Plus strand

Genomic View for TXNDC12-AS1 Gene

Genes around TXNDC12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TXNDC12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TXNDC12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TXNDC12-AS1 Gene

Proteins for TXNDC12-AS1 Gene

Post-translational modifications for TXNDC12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TXNDC12-AS1 Gene

Domains & Families for TXNDC12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TXNDC12-AS1 Gene

Function for TXNDC12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TXNDC12-AS1 Gene

Localization for TXNDC12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TXNDC12-AS1 Gene

Pathways & Interactions for TXNDC12-AS1 Gene

SuperPathways for TXNDC12-AS1 Gene

No Data Available

Interacting Proteins for TXNDC12-AS1 Gene

Gene Ontology (GO) - Biological Process for TXNDC12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TXNDC12-AS1 Gene

Drugs & Compounds for TXNDC12-AS1 Gene

No Compound Related Data Available

Transcripts for TXNDC12-AS1 Gene

mRNA/cDNA for TXNDC12-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TXNDC12-AS1 Gene

No ASD Table

Relevant External Links for TXNDC12-AS1 Gene

GeneLoc Exon Structure for
TXNDC12-AS1
ECgene alternative splicing isoforms for
TXNDC12-AS1

Expression for TXNDC12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TXNDC12-AS1 Gene

genes like me logo Genes that share expression patterns with TXNDC12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TXNDC12-AS1 Gene

Orthologs for TXNDC12-AS1 Gene

Evolution for TXNDC12-AS1 Gene

ENSEMBL:
Gene Tree for TXNDC12-AS1 (if available)
TreeFam:
Gene Tree for TXNDC12-AS1 (if available)

No data available for Orthologs for TXNDC12-AS1 Gene

Paralogs for TXNDC12-AS1 Gene

No data available for Paralogs for TXNDC12-AS1 Gene

Variants for TXNDC12-AS1 Gene

Sequence variations from dbSNP and Humsavar for TXNDC12-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001059794 -- 52,051,501(+) G/A/T intron_variant
rs1001489456 -- 52,051,741(+) A/C intron_variant
rs1002092152 -- 52,050,157(+) T/C upstream_transcript_variant
rs1004144937 -- 52,051,732(+) C/G intron_variant
rs1005139073 -- 52,050,410(+) G/C upstream_transcript_variant

Additional Variant Information for TXNDC12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TXNDC12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TXNDC12-AS1 Gene

Disorders for TXNDC12-AS1 Gene

Additional Disease Information for TXNDC12-AS1

No disorders were found for TXNDC12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TXNDC12-AS1 Gene

Publications for TXNDC12-AS1 Gene

No publications were found for TXNDC12-AS1 Gene.

Products for TXNDC12-AS1 Gene

Sources for TXNDC12-AS1 Gene

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