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Aliases & Descriptions for TXN gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
User Feedback | | Aliases & Descriptions |
|---|
| thioredoxin1 2 | | ADF2 3 | | TRX1 2 3 | | MGC619752 | | Surface-associated sulphydryl protein2 3 | | DKFZp686B19932 | | TRX12 3 | | TRDX3 | | ATL-derived factor2 3 | | Trx3 | | SASP2 3 | | |
Search outside databases for aliases for TXN genePrevious GC identifers: GC09M103804 GC09M104738 GC09M106463 GC09M108386 GC09M110085 GC09M112045 |
Summaries for TXN gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
User Feedback | Entrez Gene summary for TXN: Thioredoxin is a 12-kD oxidoreductase enzyme containing a dithiol-disulfide active site. It is ubiquitous and found inmany organisms from plants and bacteria to mammals. Multiple in vitro substrates for thioredoxin have been identified,including ribonuclease, choriogonadotropins, coagulation factors, glucocorticoid receptor, and insulin. Reduction ofinsulin is classically used as an activity test.(supplied by OMIM) UniProtKB/Swiss-Prot: THIO_HUMAN, P10599Function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to adisulfide and catalyzes dithiol-disulfide exchange reactions. Plays a role in the reversible S-nitrosylation ofcysteine residues in target proteins, and thereby contributes to the response to intracellular nitric oxide.Nitrosylates the active site Cys of CASP3 in response to nitric oxide (NO), and thereby inhibits caspase-3 activityFunction: ADF augments the expression of the interleukin-2 receptor TAC (IL2R/P55) Gene Wiki entry for TXN (Thioredoxin) |
Genomic Views for TXN gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl (release 56),
Regulatory elements and Epigenetics data according to
SABiosciences) About This Section
User Feedback | Regulatory elements:
SABiosciences Regulatory transcription factor binding sites in the TXN gene upstream (promoter) region : AP-1 PPAR-gamma1 PPAR-gamma2 c-Fos c-Jun Sp1 GR-alpha RFX1 Max1 c-Myc
Epigenetics:
SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for TXN:  MePH12842-2A
Genomic Location: Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9q31 Ensembl cytogenetic band: 9q31.3 HGNC cytogenetic band: 9q31TXN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M113006: view genomic region
(about GC identifiers)
Start:
|
113,006,091 bp from pter |
End:
|
113,018,920 bp from pter |
Size:
|
12,830 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000009.11 NT_008470.19
| Proteins for TXN gene
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene,
Novus Biologicals, and/or
Sino Biological,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abnova,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
User Feedback | UniProtKB/Swiss-Prot: THIO_HUMAN, P10599 (See
protein sequence)Recommended Name: Thioredoxin Size: 105 amino acids; 11737 Da
Subunit: Homodimer; disulfide-linked. Interacts with TXNIP through the redox-active site. Interacts with MAP3K5 andCASP3. In case of infection, interacts with S.typhimurium protein slrP
Subcellular location: Cytoplasm
PDB structures from and Proteopedia :1AIU (3D)
 1AUC (3D)
 1CQG (3D)
 1CQH (3D)
 1ERT (3D)
 1ERU (3D)
 1ERV (3D)
 1ERW (3D)
 1M7T (3D)
 1MDI (3D)
 1MDJ (3D)
 1MDK (3D)
 1TRS (3D)
 1TRU (3D)
 1TRV (3D)
 1TRW (3D)
 1W1C (3D)
 1W1E (3D)
 2HSH (3D)
 2HXK (3D)
 2IFQ (3D)
 2IIY (3D)
 3E3E (3D)
 3TRX (3D)
 4TRX (3D)
 
Secondary accessions: Q53X69 Q96KI3 Q9UDG5Post-translational modifications:
In the fully reduced protein, both Cys-69 and Cys-73 are nitrosylated in response to nitric oxide (NO). When twodisulfide bonds are present in the protein, only Cys-73 is nitrosylated. Cys-73 can serve as donor for nitrosylationof target proteins1
In case of infection, ubiquitinated by S.typhimurium protein slrP, leading to its degradation1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003320.2
ENSEMBL proteins: ENSP00000363639 ENSP00000363641
Human Recombinant Proteins
4 Gene Ontology (GO) cellular component terms (GO ID links to tree view): About this table
TXN for ontologies About GeneDecksing
Antibodies for TXN: Assays for TXN: | Protein
Domains/ Families for TXN gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
User Feedback |
TXN for domains About GeneDecksing
5/7 InterPro domains/families (see all 7
):Graphical View of Domain Structure for InterPro Entry P10599ProtoNet protein and cluster: P10599 1 Blocks protein family: IPB006662 Thioredoxin type domain
UniProtKB/Swiss-Prot: THIO_HUMAN, P10599Similarity: Belongs to the thioredoxin familySimilarity: Contains 1 thioredoxin domain | Gene Function for TXN gene
(According to MGI May 08 2010, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Millipore,
Abnova,
siRNAs from
Applied Biosystems,
Sigma-Aldrich, Clones from
Millipore,
Sigma-Aldrich,
OriGene,
Sino Biological,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene.)
About This Section
User Feedback | UniProtKB/Swiss-Prot: THIO_HUMAN, P10599Function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to adisulfide and catalyzes dithiol-disulfide exchange reactions. Plays a role in the reversible S-nitrosylation ofcysteine residues in target proteins, and thereby contributes to the response to intracellular nitric oxide.Nitrosylates the active site Cys of CASP3 in response to nitric oxide (NO), and thereby inhibits caspase-3 activityFunction: ADF augments the expression of the interleukin-2 receptor TAC (IL2R/P55)Genatlas biochemistry entry for TXN:thioredoxin 2 Gene Ontology (GO) molecular function terms (GO ID links to tree view): About this table
TXN for ontologies About GeneDecksing
Animal Models: 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Txn1):
TXN for phenotypes About GeneDecksing
| Pathways & Interactions for TXN gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
Applied Biosystems GeneAssist,
KEGG
and/or UniProtKB,
(map by GeneGo),
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene).
About This Section
User Feedback |
TXN for pathways About GeneDecksing
1 Millipore Pathway for TXN 2 Sigma-Aldrich "Your Favorite Gene" Pathways for TXN (Your Favorite Gene powered by Ingenuity)
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TXN
5/20 Interacting proteins for TXN (ENSP000003636413 P105991, 2) via UniProtKB, MINT, and/or STRING (see all 20
) About this table
5/9 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 9
): About this table
TXN for ontologies About GeneDecksing
|
Drugs & Compounds for TXN gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
User Feedback |
TXN for compounds About GeneDecksing
 |
Enzo Life Sciences drugs & compounds for TXN |
Browse Tocris compounds for TXN 10/596 Novoseek chemical compound relationships for TXN gene (see all 596
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| dithiol |
100.00 |
100 |
2177148 (3), 12816947 (3), 16969714 (2), 14713336 (2) (see all 93) |
| dithiothreitol |
100.00 |
150 |
9194603 (3), 7016827 (3), 385588 (3), 3678134 (3) (see all 100) |
| glutathione |
100.00 |
531 |
16700069 (7), 16337887 (7), 15388247 (6), 16046214 (5) (see all 100) |
| nadph |
100.00 |
291 |
3740850 (6), 18717593 (4), 17550271 (4), 15983215 (4) (see all 100) |
| methionine sulfoxide |
71.13 |
51 |
9573155 (2), 9501259 (2), 3533930 (2), 2832416 (2) (see all 42) |
| cysteine |
69.40 |
209 |
8542921 (5), 17627472 (4), 8942651 (3), 8679592 (3) (see all 100) |
| nicotinamide adenine dinucleotide phosphate |
33.12 |
65 |
17563540 (4), 1446686 (4), 3740850 (3), 3190242 (3) (see all 45) |
| selenocysteine |
29.14 |
33 |
17098255 (2), 16464088 (2), 14584040 (2), 10833265 (2) (see all 29) |
| h2o2 |
28.35 |
155 |
14688353 (5), 9559867 (4), 17823364 (4), 16263712 (4) (see all 100) |
| gssg |
25.24 |
44 |
19362171 (5), 14668013 (4), 9214573 (3), 19737561 (2) (see all 31) |
About this table
|
Transcripts for TXN gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Primers from
OriGene and/or
SABiosciences, Expression Assays from Applied Biosystems) About This Section
User Feedback | Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_003329
| Clones: |  | Origene GFP tagged cDNA clones in CMV expression vector: TXN Origene Myc/DDK tagged cDNA clones in CMV expression vector: TXN Origene untagged cDNA clones in CMV expression vector (see all 2): TXN
|
| Primers: |  | Origene genome-wide validated SYBR primer pairs: TXN
| |  | SABiosciences RT2 qPCR Primer Assay for TXN: PPH18986A  |
REFSEQ mRNAs for TXN gene: NM_003329.2 Additional cDNA sequence: AF065241.1 AF085844.1 AF276919.1 AF313911.1 AK289508.1 AY004872.1 BC003377.1 BC054866.1 BX647247.1 CR407665.1 CR602033.1 D28376.1 J04026.1 X77584.1 24/27 DOTS entries (see all 27
): DT.101969754 DT.100039182 DT.95346744 DT.121158987 DT.91775546 DT.121158974 DT.40116225 DT.91930402 DT.91739861 DT.100879170 DT.92041955 DT.95233817 DT.121159085 DT.121254610 DT.100879172 DT.121158975 DT.121158976 DT.121158979 DT.121158989 DT.121158996 DT.121159061 DT.95155183 DT.95233748 DT.100672944 24/654 AceView cDNA sequences (see all 654
): D53041 R29707 BX647247 BF970488 AI832644 AI362770 BQ774337 CD370882 NM_003329 BQ430518 BG055101 CB106636 AA345578 AI879273 CB108281 AY004872 AI879657 BF792137 AF085844 W60036 AA362199 AA383227 BM052957 BU155561
highest scoring ESTs for TXN:AA025693 AA150817 AA313623 AA314090 AA315700 AA315827 AA344785 AA362285 AA642116 AA772033 Unigene Cluster for TXN: Thioredoxin Hs.435136 [show with all ESTs]Unigene Representative Sequence: BM810480
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000374515
ENST00000487892
ENST00000374517
|
Expression for TXN gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems,
Primers from
OriGene and/or
SABiosciences
)
About This Section
User Feedback | TXN expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TXN
1 / 2 / 3 3 probe-sets matching TXN gene
Affymetrix probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 36992_at2, 3
|
U95-A |
3 |
1.00 |
0.91 |
1.00 |
1.00 |
AI653621 |
0.80 |
1.00 |
0.91 |
1 |
| 208864_s_at2, 3
|
U133-A |
2 |
1.00 |
0.95 |
-- |
-- |
AF313911 |
0.80 |
1.00 |
0.91 |
1 |
| 208864_s_at2
|
U133Plus2 |
2 |
1.00 |
0.95 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
TXN for expression About GeneDecksing
Data from
Genenote 
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTTCTGAAA
SOURCE GeneReport for Unigene cluster: Hs.435136
Expression variation in blood from EXPOLDB for TXN | Primers: |  | Origene genome-wide validated SYBR primer pairs: TXN 
| |  | SABiosciences RT2 qPCR Primer Assay for TXN: PPH18986A  |
|
Orthologs for TXN gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
User Feedback |
Orthologs for TXN gene from 5/15 species (see all 15
)
About this table Species with no ortholog for TXN
ENSEMBL Gene Tree for TXN | Paralogs for TXN gene(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
User Feedback | Paralogs for TXN gene
- TXNDC82 TXNDC22 TXNL12
TXN for paralogs About GeneDecksing
Pseudogenes
- 6 related pseudogenes
|
Genomic Variants for TXN gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants,
Genotyping Reagents from
Applied Biosystems)
About This Section
User Feedback |
HapMap Linkage Disequilibrium images for TXN (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)  Database of Genomic Variants (DGV): 4 variations for TXN 4 CNVs: 8630 36904 36905 36903 |
Disorders & Mutations for TXN gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
User Feedback |
TXN for disorders About GeneDecksing
OMIM: 187700
10/380 Novoseek disease relationships for TXN gene (see all 380
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| adult t-cell leukemia |
20.15 |
45 |
9116292 (7), 1398748 (4), 8139268 (2), 2999237 (2) (see all 29) |
| htlv-i |
8.19 |
23 |
2889666 (3), 1398748 (3), 11841832 (3), 7933622 (2) (see all 14) |
| nonalcoholic steatohepatitis |
5.26 |
13 |
12480557 (6), 16257259 (5), 18636507 (2) |
| chest pain syndrome |
5.12 |
5 |
14677813 (2), 15749180 (1), 14713337 (1), 12947364 (1) |
| anemia; fanconi |
4.29 |
15 |
11948424 (5), 14669993 (4), 9475178 (3), 14730345 (3) |
| ebv-related malignancy |
3.64 |
2 |
9046841 (2) |
| cancer cell growth |
3.62 |
8 |
11035260 (2), 9679540 (1), 9042207 (1), 14695837 (1) (see all 7) |
| bakers asthma |
3.24 |
3 |
16522470 (3) |
| autoimmune myocarditis |
3.20 |
4 |
15353510 (1), 12882710 (1), 12870672 (1), 12123771 (1) |
| myocarditis |
3.09 |
18 |
15193838 (3), 12870673 (3), 12870672 (3), 12882710 (2) (see all 9) |
About this table
Human Genome Epidemiology Navigator: TXN (8 documents)
|
Medical News for TXN gene(Possibly Related Articles in
Doctor's Guide)
About This Section
User Feedback | -- |
Publications for TXN gene (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
User Feedback | 10/1237 PubMed articles for TXN gene (see all 1237
):- Human thioredoxin homodimers: regulation by pH, role of aspartate 60, and crystal structure of the aspartate 60 --> asparagine mutant. (PubMed id 9369469)1, 3, 4 Andersen J.F....Montfort W.R. (1997)
- The solution structure of human thioredoxin complexed with its target from Ref-1 reveals peptide chain reversal. (PubMed id 8736558)1, 3, 4 Qin J.... Gronenborn A.M. (1996)
- Crystal structures of reduced, oxidized, and mutated human thioredoxins: evidence for a regulatory homodimer. (PubMed id 8805557)1, 3, 4 Weichsel A.... Montfort W.R. (1996)
- Isolation and characterization of human thioredoxin-encoding genes. (PubMed id 1874447)1, 3, 4 Tonissen K.F. and Wells J.R.E. (1991)
- Human thioredoxin reactivity-structure/function relationship. (PubMed id 2176490)1, 3, 4 Jacquot J.-P.... Wollman E. (1990)
- ATL-derived factor (ADF), an IL-2 receptor/Tac inducer homologous to thioredoxin; possible involvement of dithiol-reduction in the IL-2 receptor induction. (PubMed id 2785919)1, 3, 4 Tagaya Y.... Yodoi J. (1989)
- A proton nuclear magnetic resonance assignment and secondary structure determination of recombinant human thioredoxin. (PubMed id 2684271)1, 3, 4 Forman-Kay J.D.... Gronenborn A.M. (1989)
- Salmonella type III secretion effector SlrP is an E3 ubiquitin ligase for mammalian thioredoxin. (PubMed id 19690162)3, 4 Bernal-Bayard J. and Ramos-Morales F. (2009)
- Thioredoxin is required for S-nitrosation of procaspase-3 and the inhibition of apoptosis in Jurkat cells. (PubMed id 17606900)3, 4 Mitchell D.A....Marletta M.A. (2007)
- Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. (PubMed id 16916647)3, 4 Kim S.C.... Zhao Y. (2006)
|
Search for TXN gene
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
User Feedback |
|
Genome Databases showing TXN gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
User Feedback |
| Other Databases showing TXN gene
(According to HUGE)
About This Section
User Feedback | -- |
Specialized Databases showing TXN gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
User Feedback |
| Name | Description |
| NIEHS-SNPs | http://egp.gs.washington.edu/data/txn/ |
|
| | | About This Section
User Feedback | Patent Information for TXN gene:  Search GeneIP for patents involving TXN
GeneCards and IP:  Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
| Services for TXN gene(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Novus Biologicals, Epitomics, Sigma-Aldrich, R&D Systems, SABiosciences, Millipore, Abnova, Clones available from OriGene, Sigma-Aldrich, Sino Biological, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
User Feedback | 
 Products for TXN:
 | |
 | | | | |
 |  |  |  |
| Antibodies & Assays for TXN  (Thioredoxin 1) |
| | | Search Tocris compounds for TXN |
| |
 |  |  |  | | | | | |
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