TXLNG2P Gene
pseudogene GIFtS: 38
GCID: GC0YP021732
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taxilin gamma 2, pseudogene(Previous names: chromosome Y open reading frame 15A, chromosome Y open...)
(Previous symbols: CYorf15A, CYorf15B)
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Aliases
for TXLNG2P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Taxilin Gamma 2, Pseudogene1 2 | | CYorf15A1 2 3 5 | | CYorf15B1 2 | | Chromosome Y Open Reading Frame 15A1 | | Chromosome Y Open Reading Frame 15B1 | | Gamma-Taxilin 2 Pseudogene3 |
Export aliases for TXLNG2P gene to outside databases |
Summaries
for TXLNG2P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for TXLNG2P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000024.9 NT_011875.12
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for TXLNG2P
Other transcription factors
Search SABiosciences Chromatin IP Primers for TXLNG2P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TXLNG2P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Yq11.222 Ensembl cytogenetic band: Yq11.222 HGNC cytogenetic band: Yq11.222TXLNG2P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome Y GeneLoc Exon Structure GeneLoc location for GC0YP021732: view genomic region
(about GC identifiers)
Start:
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21,729,199 bp from pter |
End:
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21,768,160 bp from pter |
Size:
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38,962 bases |
Orientation:
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plus strand |
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Proteins
for TXLNG2P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: TXNG2_HUMAN, Q9BZA5 (See
protein sequence)Recommended Name: Putative gamma-taxilin 2 Size: 131 amino acids; 14632 Da
Caution: Could be the product of a pseudogene. Product of a degenerated gene that is homologous to the 5'-portion ofthe X-linked TXLNG gene
Sequence caution: Sequence=AAK13476.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;Sequence=AAK13476.1; Type=Frameshift; Positions=86, 110;Explore the universe of human proteins at neXtProt for TXLNG2P: NX_Q9BZA5
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9BZA5
TXLNG2P Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products:
TXLNG2P Antibody Products:
Assay Products for TXLNG2P: |
Protein
Domains /
Families
for TXLNG2P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
TXLNG2P for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9BZA5ProtoNet protein and cluster: Q9BZA5 UniProtKB/Swiss-Prot: TXNG2_HUMAN, Q9BZA5Similarity: Belongs to the taxilin family |
Function
for TXLNG2P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TXLNG2P
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TXLNG2P
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for TXLNG2P | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TXLNG2P | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TXLNG2P |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TXLNG2P |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
IPI | -- | | GO:0019905 | syntaxin binding |
IEA | -- |
TXLNG2P for ontologies About GeneDecksing
|
Pathways & Interactions
for TXLNG2P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TXLNG2P
|
Drugs & Compounds
for TXLNG2P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for TXLNG2P
Search CenterWatch for drugs/clinical trials and news about TXLNG2P
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Transcripts
for TXLNG2P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for TXLNG2P gene: NM_001005852.2 Unigene Cluster for TXLNG2P: Taxilin gamma 2, pseudogene Hs.522863 [show with all ESTs]Unigene Representative Sequence: NR_04512816 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000407724(uc004fud.4) ENST00000459719(uc004fuc.4) ENST00000447520
ENST00000445715 ENST00000538014(uc011nax.2) ENST00000447202(uc011naw.1)
ENST00000588613 ENST00000589075 ENST00000585549 ENST00000587095 ENST00000488280
ENST00000253320(uc022cof.1) ENST00000593000 ENST00000592697 ENST00000251749
ENST00000382832
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TXLNG2P
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TXLNG2P
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for TXLNG2P | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TXLNG2P | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TXLNG2P |
Additional cDNA sequence: AF332224.1 AK090535.1 AL049280.1 NR_045128.1 NR_045129.1 12 DOTS entries: DT.100672801 DT.101981262 DT.206016 DT.107019 DT.97838710 DT.91726001 DT.95100334 DT.120653841 DT.101962998 DT.40285834 DT.97775092 DT.91714344 24/115 AceView cDNA sequences (see all 115): AA741089 BQ228928 AA485188 AW173005 BE350516 BX284051 AI221730 CA310501 AA747918 BM263181 AW152633 AA912104 AA284176 AW236212 AA485077 N59314 BI757053 BF062193 BM142473 AA642399 AA746374 AI761758 AW387371 AA806034
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for TXLNG2P About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 |
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| SP1: | | | | | - | | | | | | | | |
| SP2: | | | | | | | | | | | | |
ECgene alternative splicing isoforms for TXLNG2P
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Expression
for TXLNG2P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| TXLNG2P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
Genevestigator expression for TXLNG2P
SOURCE GeneReport for Unigene cluster: Hs.522863
UniProtKB/Swiss-Prot: TXNG2_HUMAN, Q9BZA5Tissue specificity: Ubiquitously expressed
SABiosciences Custom PCR Arrays for TXLNG2P
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TXLNG2P
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat TXLNG2P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TXLNG2P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TXLNG2P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TXLNG2P |
Orthologs
for TXLNG2P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for TXLNG2P (if available)
TreeFam Gene Tree for TXLNG2P (if available) |
Paralogs
for TXLNG2P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for TXLNG2P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr Y pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for TXLNG2P (21729199 - 21768160 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for TXLNG2P: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TXLNG2P |
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Disorders
/ Diseases
for TXLNG2P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
TXLNG2P for disorders About GeneDecksing
OMIM gene information: 400031
OMIM disorders: --
1  disease for TXLNG2P: About MalaCardsparkinson's disease
Export disorders for TXLNG2P gene to outside databases
|
Publications
for TXLNG2P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for TXLNG2P gene, integrated from 9 sources (see all 11):
(articles sorted by number of sources associating them with TXLNG2P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PubMed id 12815422)1, 2 Skaletsky H.... Page D.C. (2003)
- Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (2010)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)1 Bechtel S.... Schupp I. (2007)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- Identification of genes related to Parkinson's disease using expressed sequence tags. (PubMed id 17213182)1 Kim J.M....Kim N.S. (2006)
- Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee. (PubMed id 16136134)1 Hughes J.F....Page D.C. (2005)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (2001)
- Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)
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External Searches for TXLNG2P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing TXLNG2P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing TXLNG2P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TXLNG2P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for TXLNG2P | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
| Patent Information for TXLNG2P gene:
Search GeneIP for patents involving TXLNG2P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for TXLNG2P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for TXLNG2P | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TXLNG2P | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TXLNG2P | | | OriGene Protein Over-expression Lysate for TXLNG2P | | Browse OriGene Fluorogenic Cell Assay Kits | | | Browse OriGene siRNAs | | OriGene 3'-UTR Clone for TXLNG2P | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TXLNG2P | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TXLNG2P | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for TXLNG2P | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for TXLNG2P | | OriGene Custom Protein Services for TXLNG2P | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TXLNG2P | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TXLNG2P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TXLNG2P | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TXLNG2P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TXLNG2P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TXLNG2P |
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| | | | Search Tocris compounds for TXLNG2P |
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 | | | TXLNG2P Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TXLNG2P |
|  |  |  | | | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TXLNG2P |
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