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Aliases for TVP23C-CDRT4 Gene

Aliases for TVP23C-CDRT4 Gene

  • TVP23C-CDRT4 Readthrough 2 3
  • FAM18B2-CDRT4 Readthrough 2 3
  • Uncharacterized Protein LOC100533496 3
  • FAM18B2-CDRT4 3

External Ids for TVP23C-CDRT4 Gene

Previous Symbols for TVP23C-CDRT4 Gene

  • FAM18B2-CDRT4

Summaries for TVP23C-CDRT4 Gene

Entrez Gene Summary for TVP23C-CDRT4 Gene

  • This locus represents naturally occurring readthrough transcription between the neighboring TVP23C (trans-golgi network vesicle protein 23 homolog) and CDRT4 (CMT1A duplicated region transcript 4) genes on chromosome 17. Alternative splicing results in multiple transcript variants, one of which encodes a protein that shares sequence identity with the upstream gene product, but its C-terminus is distinct due to frameshifts relative to the downstream gene. [provided by RefSeq, Apr 2014]

GeneCards Summary for TVP23C-CDRT4 Gene

TVP23C-CDRT4 (TVP23C-CDRT4 Readthrough) is a Protein Coding gene. An important paralog of this gene is TVP23B.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TVP23C-CDRT4 Gene

Genomics for TVP23C-CDRT4 Gene

Genomic Location for TVP23C-CDRT4 Gene

Start:
15,436,015 bp from pter
End:
15,563,631 bp from pter
Size:
127,617 bases
Orientation:
Minus strand

Genomic View for TVP23C-CDRT4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TVP23C-CDRT4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TVP23C-CDRT4 Gene

No data available for Regulatory Elements for TVP23C-CDRT4 Gene

Proteins for TVP23C-CDRT4 Gene

  • Protein details for TVP23C-CDRT4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYB9-A0A0A6YYB9
    Recommended name:
    Golgi apparatus membrane protein TVP23 homolog
    Protein Accession:
    A0A0A6YYB9
    Secondary Accessions:

    Protein attributes for TVP23C-CDRT4 Gene

    Size:
    164 amino acids
    Molecular mass:
    19015 Da
    Quaternary structure:
    No Data Available
  • Protein details for TVP23C-CDRT4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E5RGC5-E5RGC5
    Recommended name:
    Golgi apparatus membrane protein TVP23 homolog C
    Protein Accession:
    E5RGC5
    Secondary Accessions:

    Protein attributes for TVP23C-CDRT4 Gene

    Size:
    53 amino acids
    Molecular mass:
    6152 Da
    Quaternary structure:
    No Data Available
  • Protein details for TVP23C-CDRT4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E5RIS5-E5RIS5
    Recommended name:
    Golgi apparatus membrane protein TVP23 homolog B
    Protein Accession:
    E5RIS5
    Secondary Accessions:
    • D6R9A3

    Protein attributes for TVP23C-CDRT4 Gene

    Size:
    37 amino acids
    Molecular mass:
    4314 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TVP23C-CDRT4 Gene

Proteomics data for TVP23C-CDRT4 Gene at MOPED

Post-translational modifications for TVP23C-CDRT4 Gene

No Post-translational modifications

Other Protein References for TVP23C-CDRT4 Gene

No data available for DME Specific Peptides for TVP23C-CDRT4 Gene

Domains for TVP23C-CDRT4 Gene

Protein Domains for TVP23C-CDRT4 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with TVP23C-CDRT4: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TVP23C-CDRT4 Gene

Function for TVP23C-CDRT4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TVP23C-CDRT4 Gene

Localization for TVP23C-CDRT4 Gene

Gene Ontology (GO) - Cellular Components for TVP23C-CDRT4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with TVP23C-CDRT4: view

Pathways for TVP23C-CDRT4 Gene

SuperPathways for TVP23C-CDRT4 Gene

No Data Available

Interacting Proteins for TVP23C-CDRT4 Gene

Gene Ontology (GO) - Biological Process for TVP23C-CDRT4 Gene

None

No data available for Pathways by source for TVP23C-CDRT4 Gene

Transcripts for TVP23C-CDRT4 Gene

mRNA/cDNA for TVP23C-CDRT4 Gene

(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TVP23C-CDRT4 Gene

No ASD Table

Relevant External Links for TVP23C-CDRT4 Gene

GeneLoc Exon Structure for
TVP23C-CDRT4
ECgene alternative splicing isoforms for
TVP23C-CDRT4

Expression for TVP23C-CDRT4 Gene

No Expression Related Data Available

Orthologs for TVP23C-CDRT4 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TVP23C-CDRT4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM18B1 37
  • 74 (a)
ManyToMany
TVP23B 36
  • 92.68 (n)
  • 92.07 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 64 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 61 (a)
OneToMany
chicken
(Gallus gallus)
Aves FAM18B1 37
  • 59 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 62 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii tvp23b 37
  • 52 (a)
ManyToMany
zgc:112148 37
  • 47 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG5021 37
  • 32 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C34D4.4 37
  • 21 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TVP23 37
  • 20 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4306 37
  • 38 (a)
OneToMany
Species with no ortholog for TVP23C-CDRT4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TVP23C-CDRT4 Gene

ENSEMBL:
Gene Tree for TVP23C-CDRT4 (if available)
TreeFam:
Gene Tree for TVP23C-CDRT4 (if available)

Paralogs for TVP23C-CDRT4 Gene

Paralogs for TVP23C-CDRT4 Gene

genes like me logo Genes that share paralogs with TVP23C-CDRT4: view

Variants for TVP23C-CDRT4 Gene

Sequence variations from dbSNP and Humsavar for TVP23C-CDRT4 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs716388 -- 15,496,438(+) CACCA(C/T)TACCC intron-variant
rs716389 -- 15,496,423(+) ATGAC(C/T)GACAT intron-variant
rs1465252 -- 15,501,498(-) TCAAC(A/G)GGAAG intron-variant
rs1548681 -- 15,497,364(-) TGTGT(A/G)TAATT intron-variant
rs2052022 -- 15,501,673(-) TGAGT(C/T)GTTGG intron-variant

Relevant External Links for TVP23C-CDRT4 Gene

HapMap Linkage Disequilibrium report
TVP23C-CDRT4

No data available for Structural Variations from Database of Genomic Variants (DGV) for TVP23C-CDRT4 Gene

Disorders for TVP23C-CDRT4 Gene

No disorders were found for TVP23C-CDRT4 Gene.

No data available for UniProtKB/Swiss-Prot for TVP23C-CDRT4 Gene

Publications for TVP23C-CDRT4 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  4. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for TVP23C-CDRT4 Gene

Sources for TVP23C-CDRT4 Gene

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