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Aliases for TUG1 Gene

Subcategory (RNA class) for TUG1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TUG1 Gene

  • Taurine Up-Regulated 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 80 2 3
  • Taurine Upregulated 1 (Non-Protein Coding) 2
  • Taurine Upregulated Gene 1 3
  • Non-Protein Coding RNA 80 2
  • TUG1 Noncoding RNA 3
  • NCRNA00080 3
  • LINC00080 3
  • TI-227H 3

External Ids for TUG1 Gene

Previous GeneCards Identifiers for TUG1 Gene

  • GC22P029692
  • GC22P031365
  • GC22P014327

Summaries for TUG1 Gene

GeneCards Summary for TUG1 Gene

TUG1 (Taurine Up-Regulated 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Gene Wiki entry for TUG1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUG1 Gene

Genomics for TUG1 Gene

Regulatory Elements for TUG1 Gene

Enhancers for TUG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F030701 0.2 Ensembl 48.5 -267.1 -267111 0.6 ZFP64 ZNF140 ZNF704 ZNF664 ZNF316 ZNF791 SCRT2 ZNF600 FOS ZNF263 TUG1 MORC2 DUSP18 MGC20647 OSBP2 MIR3200
GH22F031097 1.2 Ensembl ENCODE 31 +133.8 133841 10.5 HDGF PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 TUG1 MORC2 SELENOM PLA2G3 ENSG00000214125 RNF185 PRR14L SFI1 INPP5J ENSG00000273387
GH22F031658 1.1 Ensembl ENCODE 30.2 +691.8 691836 5.2 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 TUG1 RTCB PRR14L MORC2 RPS17P16 EIF4ENIF1 ENSG00000240591 PISD PIK3IP1 MIR7109
GH22F031752 0.4 ENCODE 29.8 +784.7 784653 3.5 HDGF ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 ZNF143 FOS ZNF263 TUG1 PRR14L RTCB MORC2 RNU6-201P SELENOM PIK3IP1 DEPDC5
GH22F030108 0.2 ENCODE 26.6 -860.5 -860528 0.7 ATF1 YBX1 DMAP1 ZSCAN9 ZNF2 RAD21 ZNF48 RARA ZNF121 ZNF366 MORC2 TUG1 THOC5 ASCC2 HORMAD2-AS1 MGC20647 RPL36P17 RPS3AP51
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TUG1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TUG1 Gene

Chromosome:
22
Start:
30,969,211 bp from pter
End:
30,979,395 bp from pter
Size:
10,185 bases
Orientation:
Plus strand

Genomic View for TUG1 Gene

Genes around TUG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUG1 Gene

Proteins for TUG1 Gene

Post-translational modifications for TUG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUG1 Gene

Domains & Families for TUG1 Gene

Gene Families for TUG1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TUG1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TUG1 Gene

Function for TUG1 Gene

Phenotypes for TUG1 Gene

genes like me logo Genes that share phenotypes with TUG1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUG1 Gene

Localization for TUG1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TUG1 Gene COMPARTMENTS Subcellular localization image for TUG1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TUG1 Gene

Pathways & Interactions for TUG1 Gene

SuperPathways for TUG1 Gene

No Data Available

Interacting Proteins for TUG1 Gene

Gene Ontology (GO) - Biological Process for TUG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUG1 Gene

Transcripts for TUG1 Gene

Unigene Clusters for TUG1 Gene

Taurine upregulated 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TUG1 Gene

No ASD Table

Relevant External Links for TUG1 Gene

GeneLoc Exon Structure for
TUG1
ECgene alternative splicing isoforms for
TUG1

Expression for TUG1 Gene

mRNA expression in normal human tissues for TUG1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TUG1 Gene:

TUG1

SOURCE GeneReport for Unigene cluster for TUG1 Gene:

Hs.554829
genes like me logo Genes that share expression patterns with TUG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TUG1 Gene

Orthologs for TUG1 Gene

Evolution for TUG1 Gene

ENSEMBL:
Gene Tree for TUG1 (if available)
TreeFam:
Gene Tree for TUG1 (if available)

No data available for Orthologs for TUG1 Gene

Paralogs for TUG1 Gene

No data available for Paralogs for TUG1 Gene

Variants for TUG1 Gene

Sequence variations from dbSNP and Humsavar for TUG1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1048071 -- 30,973,521(+) GAGTC(A/C)CCTTA nc-transcript-variant
rs1062640 -- 30,977,592(+) AAACT(A/T)ATTTA nc-transcript-variant
rs1064026 -- 30,970,895(-) GATTT(G/T)GAGGT nc-transcript-variant
rs1064027 -- 30,970,646(-) CCATG(C/G)TCGTG nc-transcript-variant
rs11089485 -- 30,976,864(+) ATCTC(A/G)TCAAA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TUG1 Gene

Variant ID Type Subtype PubMed ID
nsv1110864 OTHER inversion 24896259
nsv9896 CNV gain 18304495

Relevant External Links for TUG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TUG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TUG1 Gene

Disorders for TUG1 Gene

Relevant External Links for TUG1

Genetic Association Database (GAD)
TUG1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TUG1

No disorders were found for TUG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUG1 Gene

Publications for TUG1 Gene

  1. Long intergenic non-coding RNA TUG1 is overexpressed in urothelial carcinoma of the bladder. (PMID: 22961206) Han Y. … Cai Z. (J Surg Oncol 2013) 2 3 64
  2. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao W.J. … Zhang Z.Y. (World J. Gastroenterol. 2013) 2 3 64
  3. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M. … Rinn J.L. (Elife 2013) 2 3 64
  4. The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina. (PMID: 15797018) Young T.L. … Cepko C.L. (Curr. Biol. 2005) 2 3 64
  5. Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer. (PMID: 26975529) Du Z. … Liu X.S. (Nat Commun 2016) 3 64

Products for TUG1 Gene

Sources for TUG1 Gene

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