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Aliases for TUG1 Gene

Subcategory (RNA class) for TUG1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TUG1 Gene

  • Taurine Up-Regulated 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 80 2 3
  • Taurine Upregulated 1 (Non-Protein Coding) 2
  • Taurine Upregulated Gene 1 3
  • Non-Protein Coding RNA 80 2
  • TUG1 Noncoding RNA 3
  • NCRNA00080 3
  • LINC00080 3
  • TI-227H 3

External Ids for TUG1 Gene

Previous GeneCards Identifiers for TUG1 Gene

  • GC22P029692
  • GC22P031365
  • GC22P014327

Summaries for TUG1 Gene

GeneCards Summary for TUG1 Gene

TUG1 (Taurine Up-Regulated 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Gene Wiki entry for TUG1 Gene

Additional gene information for TUG1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUG1 Gene

Genomics for TUG1 Gene

Regulatory Elements for TUG1 Gene

Enhancers for TUG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H030234 2 FANTOM5 Ensembl ENCODE dbSUPER 64.7 -722.5 -722481 24 PKNOX1 ARID4B SIN3A ZNF2 ZBTB7B ZNF416 ZNF143 FOS SP5 REST TUG1 SF3A1 EWSR1 MORC2 PES1 RNF215 TBC1D10A THOC5 HORMAD2-AS1 LIF
GH22H031658 1.4 ENCODE dbSUPER 44.7 +691.8 691836 5 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 TUG1 RTCB MORC2 PRR14L DEPDC5 RNF185 RPS17P16 EIF4ENIF1 ENSG00000240591 PISD
GH22H031077 1.6 Ensembl ENCODE dbSUPER 32.9 +113.7 113687 10 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 TUG1 MORC2 SELENOM SMTN SF3A1 INPP5J TBC1D10A PRR14L PES1 DEPDC5
GH22H031623 2.1 VISTA Ensembl ENCODE dbSUPER 25 +658.5 658473 8 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF766 SP3 MXD4 TUG1 PRR14L DEPDC5 SLC5A4 LOC100422292 MORC2 SFI1 DUSP18 RTCB PIK3IP1-AS1
GH22H031097 1.6 Ensembl ENCODE dbSUPER 31 +133.8 133841 10 PKNOX1 FOXA2 ARNT ARID4B YY1 ZNF143 FOS DEK SP3 SP5 TUG1 MORC2 RNF185 SELENOM EIF4ENIF1 PATZ1 RNF215 PLA2G3 ENSG00000214125 DEPDC5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TUG1 on UCSC Golden Path with GeneCards custom track

Promoters for TUG1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000145288 89 2201 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143

Genomic Location for TUG1 Gene

Chromosome:
22
Start:
30,969,211 bp from pter
End:
30,979,395 bp from pter
Size:
10,185 bases
Orientation:
Plus strand

Genomic View for TUG1 Gene

Genes around TUG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUG1 Gene

Proteins for TUG1 Gene

Post-translational modifications for TUG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUG1 Gene

Domains & Families for TUG1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TUG1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TUG1 Gene

Function for TUG1 Gene

Phenotypes From GWAS Catalog for TUG1 Gene

Phenotypes for TUG1 Gene

genes like me logo Genes that share phenotypes with TUG1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TUG1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUG1 Gene

Localization for TUG1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TUG1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TUG1 Gene

Pathways & Interactions for TUG1 Gene

No Data Available

Interacting Proteins for TUG1 Gene

Gene Ontology (GO) - Biological Process for TUG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUG1 Gene

Drugs & Compounds for TUG1 Gene

No Compound Related Data Available

Transcripts for TUG1 Gene

Unigene Clusters for TUG1 Gene

Taurine upregulated 1 (non-protein coding):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TUG1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TUG1 Gene

No ASD Table

Relevant External Links for TUG1 Gene

GeneLoc Exon Structure for
TUG1
ECgene alternative splicing isoforms for
TUG1

Expression for TUG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TUG1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TUG1 Gene:

TUG1

SOURCE GeneReport for Unigene cluster for TUG1 Gene:

Hs.554829
genes like me logo Genes that share expression patterns with TUG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TUG1 Gene

Orthologs for TUG1 Gene

Evolution for TUG1 Gene

ENSEMBL:
Gene Tree for TUG1 (if available)
TreeFam:
Gene Tree for TUG1 (if available)

No data available for Orthologs for TUG1 Gene

Paralogs for TUG1 Gene

No data available for Paralogs for TUG1 Gene

Variants for TUG1 Gene

Sequence variations from dbSNP and Humsavar for TUG1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000116196 -- 30,970,885(+) CTACT(G/T)CGGAA nc-transcript-variant
rs1000284790 -- 30,970,519(+) AATTA(C/G)GAGTG nc-transcript-variant
rs1000333069 -- 30,976,225(+) TTTGG(-/AA)AAGTT nc-transcript-variant
rs1000808730 -- 30,975,994(+) AGTAG(C/T)AGTTA nc-transcript-variant
rs1001040346 -- 30,967,743(+) GCAAA(A/T)TTTTC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for TUG1 Gene

Variant ID Type Subtype PubMed ID
nsv1110864 OTHER inversion 24896259
nsv9896 CNV gain 18304495

Relevant External Links for TUG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TUG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TUG1 Gene

Disorders for TUG1 Gene

Relevant External Links for TUG1

Genetic Association Database (GAD)
TUG1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TUG1

No disorders were found for TUG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUG1 Gene

Publications for TUG1 Gene

  1. Long non-coding RNA TUG1 promotes migration and invasion by acting as a ceRNA of miR-335-5p in osteosarcoma cells. (PMID: 28205334) Wang Y … Zhang W (Cancer science 2017) 2 3 60
  2. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M … Rinn JL (eLife 2013) 2 3 60
  3. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao WJ … Zhang ZY (World journal of gastroenterology 2013) 2 3 60
  4. Long intergenic non-coding RNA TUG1 is overexpressed in urothelial carcinoma of the bladder. (PMID: 22961206) Han Y … Cai Z (Journal of surgical oncology 2013) 2 3 60
  5. The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina. (PMID: 15797018) Young TL … Cepko CL (Current biology : CB 2005) 2 3 60

Products for TUG1 Gene

Sources for TUG1 Gene

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