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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

TUG1 Gene

RNA gene GIFtS: 27
GCID: GC22P031365

taurine upregulated 1 (non-protein coding)

Explore 3 diseases affiliated with
TUG1 via

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 10

Aliases
Taurine Upregulated 1 (Non-Protein Coding)¹ ²
LINC00080¹ ²
NCRNA00080¹ ²
FLJ20618¹
TI-227H²

External Ids:	HGNC: 26066¹	Entrez Gene: 55000²	Ensembl: ENSG00000253352⁷	OMIM: 614971⁵

ORGUL members:	fRNAdb¹⁰:FR323829
	NONCODE:n377310 n384135 n377360 n380155 n343050	see all 8
	Rfam:RF01891
	RNAdb:LIT3426

Export aliases for TUG1 gene to outside databases

Previous GC identifers: GC22P029692 GC22P014327

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for TUG1

fRNAdb sequence ontologies for TUG1 - the ORGUL cluster for this gene includes several descriptions:
Taurine upregulated gene 1 conserved region 3 - TUG1 (taurine upregulated gene 1) is a long non-coding RNA expressed in retina and brain. It was first identified in a screen for genes upregulated by in developing retinal cells in response to taurine. It is required for the normal development of photoreceptors in the retina [1].
Taurine upregulated gene 1 conserved region 3 - TUG1 (taurine upregulated gene 1) is a long non-coding RNA expressed in retina and brain. It was first identified in a screen for genes upregulated by in developing retinal cells in response to taurine. It is required for the normal development of photoreceptors in the retina [1].
Taurine upregulated gene 1 conserved region 3 - TUG1 (taurine upregulated gene 1) is a long non-coding RNA expressed in retina and brain. It was first identified in a screen for genes upregulated by in developing retinal cells in response to taurine. It is required for the normal development of photoreceptors in the retina [1].
mature_transcript - A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000022.10 NC_018933.1 NT_011520.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the TUG1 gene promoter:
NF-1/L NF-1 p53 Olf-1 Pax-2 Pax-2a Nkx2-5 CP2
Other transcription factors

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Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TUG1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q12.2 Ensembl cytogenetic band: 22q12.2 HGNC cytogenetic band: 22q12.2

TUG1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TUG1 gene location

GeneLoc information about chromosome 22 GeneLoc Exon Structure

GeneLoc location for GC22P031365: view genomic region (about GC identifiers)

Start:	31,365,634 bp from pter	End:	31,375,381 bp from pter
Size:	9,748 bases	Orientation:	plus strand

ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for TUG1

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
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UniProtKB: --

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
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Animal Models:

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for TUG1

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
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Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for TUG1
Search CenterWatch for drugs/clinical trials and news about TUG1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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About This Section

Unigene Cluster for TUG1:

Taurine upregulated 1 (non-protein coding)

Hs.554829 [show with all ESTs]

Unigene Representative Sequence: NR_002323

7 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000540687(lincRNA)(uc003ajf.1) ENST00000566220(lincRNA) ENST00000519077(lincRNA)(uc003ajg.3 uc003ajh.3 uc003aji.3 uc003ajj.3)

ENST00000521091(lincRNA) ENST00000569149(lincRNA) ENST00000563812(lincRNA) ENST00000569384(lincRNA)

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Additional cDNA sequence:

AB073661.1 AK000625.1 AK000749.1 AK056480.1 AK057695.1 BC037986.1 CR456447.1 NR_002323.1

24/26 DOTS entries (see all 26):

DT.92055265 DT.100044805 DT.451540 DT.101983227 DT.100825373 DT.95154725 DT.92045755 DT.95129190

DT.97784528 DT.100825371 DT.75101604 DT.92437763 DT.100825378 DT.95352250 DT.95183217 DT.95352089

DT.100825376 DT.120656890 DT.100044808 DT.100671803 DT.120656919 DT.120656921 DT.91932775 DT.92056047

24/707 AceView cDNA sequences (see all 707):

AI393165 AA811517 CD677006 BE464666 AA053771 AI015859 AW440289 BM981206

W88556 BQ006594 AI986215 BM557055 AA811100 BM806212 AA166764 AA262264

BX643169 BF448445 AA991198 BU507913 BM142215 AU118506 AI352231 AA022548

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for TUG1:RNAdb

TUG1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image
Genevestigator expression for TUG1

SOURCE GeneReport for Unigene cluster: Hs.554829
SABiosciences Custom PCR Arrays for TUG1

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for TUG1 gene from 1 species (see representative species ) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Tug1⁵	taurine upregulated gene 1	--		11 (2.56 cM) 3639794

ENSEMBL Gene Tree for TUG1 (if available)
TreeFam Gene Tree for TUG1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 22 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs73156743^1,2	C,F	--	31366232(+)	`AGGGGG/TCTGTG`	1	--	nc-transcript-variant		1		NA	120
rs148879293^1,2		--	31366330(+)	`TTGAAG/TCCCTG`	1	--	nc-transcript-variant		0	--	--	--	--
rs143579508^1,2		--	31366424(+)	`TGAATC/TCTTTT`	1	--	nc-transcript-variant		0	--	--	--	--
rs148066688^1,2		--	31366560(+)	`TTGGCC/TCGTCA`	1	--	nc-transcript-variant		0	--	--	--	--
rs185479315^1,2		--	31366614(+)	`CTCTCA/GTTGAC`	1	--	nc-transcript-variant		0	--	--	--	--
rs142965022^1,2		--	31366634(+)	`CGACCA/GTGGTT`	1	--	nc-transcript-variant		0	--	--	--	--
rs189597425^1,2		--	31366671(+)	`CATGTC/TTAGGC`	1	--	nc-transcript-variant		0	--	--	--	--
rs147453927^1,2		--	31366761(+)	`CAAGCA/GGGCTC`	1	--	nc-transcript-variant		0	--	--	--	--
rs1064026^1,2	F	--	31366881(-)	`GATTTT/GGAGGT`	1	--	nc-transcript-variant		1		MN	184
rs5997826^1,2		--	31366929(+)	`TTGGCC/TCTCCT`	1	--	nc-transcript-variant		0	--	--	--	--

HapMap Linkage Disequilibrium report for TUG1 (31365634 - 31375381 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for TUG1: --

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

TUG1 for disorders           About GeneDecksing

OMIM gene information: 614971    OMIM disorders: --

3 diseases for TUG1:    About MalaCards

intrahepatic cholangiocarcinoma cholangiocarcinoma melanoma

Export disorders for TUG1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for TUG1 gene, integrated from 9 sources (see all 11):
(articles sorted by number of sources associating them with TUG1)

Utopia: connect your pdf to the dynamic
world of online information

Long intergenic non-coding RNA TUG1 is overexpressed i n urothelial carcinoma of the bladder. (PubMed id 22961206)^{1, 3} Han Y....Cai Z. (2012)
The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina. (PubMed id 15797018)^{1, 3} Young T.L....Cepko C.L. (2005)
ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs. (PubMed id 22078878)¹ Yang L....Rosenfeld M.G. (2011)
Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791)¹ Wang A.G....Kim N.S. (2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)¹ Ota T.... Sugano S. (2004)
Human follitropin receptor (FSHR) interacts with the adapter protein 14-3-3tau. (PubMed id 15196694)¹ Cohen B.D....Dias J.A. (2004)
Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)¹ Brandenberger R.... Stanton L.W. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
Identification of genes differentially expressed in B16 murine melanoma sublines with different metastatic potentials. (PubMed id 8631027)¹ Ishiguro T....Tsuruo T. (1996)
Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)¹ Bonaldo M.F.... Soares M.B. (1996)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 55000	HGNC: 26066	AceView: FLJ20618	Ensembl:ENSG00000253352	euGenes: HUgn55000
ECgene: TUG1	H-InvDB: TUG1

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for TUG1	Pharmacogenomics, SNPs, Pathways

Intellectual Property for TUG1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for TUG1 gene:
Search GeneIP for patents involving TUG1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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TUG1 Gene

taurine upregulated 1 (non-protein coding)

Aliases
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Proteins
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Protein Domains /
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for TUG1 gene

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TUG1 Gene

taurine upregulated 1 (non-protein coding)

Aliasesfor TUG1 gene

Summariesfor TUG1 gene

Genomic Viewsfor TUG1 gene

Proteinsfor TUG1 gene

Protein Domains /Familiesfor TUG1 gene

Functionfor TUG1 gene

Pathways & Interactionsfor TUG1 gene

Drugs & Compoundsfor TUG1 gene

Transcriptsfor TUG1 gene

Expression for TUG1 gene

Orthologsfor TUG1 gene

Paralogsfor TUG1 gene

Genomic Variantsfor TUG1 gene

Disorders / Diseasesfor TUG1 gene

Publicationsfor TUG1 gene

External Searches for TUG1 gene

Genome Databases showing TUG1 gene

Other Databases showing TUG1 gene

Specialized Databases showing TUG1 gene

Intellectual Propertyfor TUG1 gene

Productsfor TUG1 gene

View Random Gene

Aliases
for TUG1 gene

Summaries
for TUG1 gene

Genomic Views
for TUG1 gene

Proteins
for TUG1 gene

Protein Domains /
Families
for TUG1 gene

Function
for TUG1 gene

Pathways & Interactions
for TUG1 gene

Drugs & Compounds
for TUG1 gene

Transcripts
for TUG1 gene

Expression
for TUG1 gene

Orthologs
for TUG1 gene

Paralogs
for TUG1 gene

Genomic Variants
for TUG1 gene

Disorders / Diseases
for TUG1 gene

Publications
for TUG1 gene

Intellectual Property
for TUG1 gene

Products
for TUG1 gene