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Aliases for TUG1 Gene

Subcategory (RNA class) for TUG1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TUG1 Gene

  • Taurine Up-Regulated 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 80 2 3
  • Taurine Upregulated 1 (Non-Protein Coding) 2
  • Taurine Upregulated Gene 1 3
  • Non-Protein Coding RNA 80 2
  • TUG1 Noncoding RNA 3
  • NCRNA00080 3
  • LINC00080 3
  • TI-227H 3

External Ids for TUG1 Gene

Previous GeneCards Identifiers for TUG1 Gene

  • GC22P029692
  • GC22P031365
  • GC22P014327

Summaries for TUG1 Gene

GeneCards Summary for TUG1 Gene

TUG1 (Taurine Up-Regulated 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Gene Wiki entry for TUG1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUG1 Gene

Genomics for TUG1 Gene

Regulatory Elements for TUG1 Gene

Promoters for TUG1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TUG1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TUG1 Gene

Chromosome:
22
Start:
30,969,211 bp from pter
End:
30,979,395 bp from pter
Size:
10,185 bases
Orientation:
Plus strand

Genomic View for TUG1 Gene

Genes around TUG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUG1 Gene

Proteins for TUG1 Gene

Post-translational modifications for TUG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUG1 Gene

Domains & Families for TUG1 Gene

Gene Families for TUG1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TUG1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TUG1 Gene

Function for TUG1 Gene

Phenotypes for TUG1 Gene

genes like me logo Genes that share phenotypes with TUG1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUG1 Gene

Localization for TUG1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TUG1 Gene COMPARTMENTS Subcellular localization image for TUG1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TUG1 Gene

Pathways & Interactions for TUG1 Gene

SuperPathways for TUG1 Gene

No Data Available

Interacting Proteins for TUG1 Gene

Gene Ontology (GO) - Biological Process for TUG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUG1 Gene

Drugs & Compounds for TUG1 Gene

No Compound Related Data Available

Transcripts for TUG1 Gene

Unigene Clusters for TUG1 Gene

Taurine upregulated 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TUG1 Gene

No ASD Table

Relevant External Links for TUG1 Gene

GeneLoc Exon Structure for
TUG1
ECgene alternative splicing isoforms for
TUG1

Expression for TUG1 Gene

mRNA expression in normal human tissues for TUG1 Gene

SOURCE GeneReport for Unigene cluster for TUG1 Gene Hs.554829

genes like me logo Genes that share expression patterns with TUG1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TUG1 Gene

Orthologs for TUG1 Gene

Evolution for TUG1 Gene

ENSEMBL:
Gene Tree for TUG1 (if available)
TreeFam:
Gene Tree for TUG1 (if available)

No data available for Orthologs for TUG1 Gene

Paralogs for TUG1 Gene

No data available for Paralogs for TUG1 Gene

Variants for TUG1 Gene

Sequence variations from dbSNP and Humsavar for TUG1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs9363 -- 30,977,737(+) GTGAG(A/T)CTAAT nc-transcript-variant
rs12290 -- 30,977,665(+) CCTTT(C/T)TGAAG nc-transcript-variant
rs15211 -- 30,978,506(-) GAAGA(G/T)GTGGT nc-transcript-variant
rs1048071 -- 30,973,521(+) GAGTC(A/C)CCTTA nc-transcript-variant
rs1062640 -- 30,977,592(+) AAACT(A/T)ATTTA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TUG1 Gene

Variant ID Type Subtype PubMed ID
nsv9896 CNV Gain 18304495

Relevant External Links for TUG1 Gene

HapMap Linkage Disequilibrium report
TUG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TUG1 Gene

Disorders for TUG1 Gene

Relevant External Links for TUG1

Genetic Association Database (GAD)
TUG1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TUG1

No disorders were found for TUG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUG1 Gene

Publications for TUG1 Gene

  1. Long intergenic non-coding RNA TUG1 is overexpressed in urothelial carcinoma of the bladder. (PMID: 22961206) Han Y. … Cai Z. (J Surg Oncol 2013) 2 3 67
  2. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao W.J. … Zhang Z.Y. (World J. Gastroenterol. 2013) 2 3
  3. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M. … Rinn J.L. (Elife 2013) 2 3
  4. The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina. (PMID: 15797018) Young T.L. … Cepko C.L. (Curr. Biol. 2005) 2 3
  5. The long noncoding RNA TUG1 regulates blood-tumor barrier permeability by targeting miR-144. (PMID: 26078353) Cai H. … Liu Y. (Oncotarget 2015) 3

Products for TUG1 Gene

Sources for TUG1 Gene

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