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Aliases for TUBBP5 Gene

Aliases for TUBBP5 Gene

  • Tubulin, Beta Pseudogene 5 2 3
  • Tubulin, Beta Polypeptide Pseudogene 5 2

External Ids for TUBBP5 Gene

Summaries for TUBBP5 Gene

GeneCards Summary for TUBBP5 Gene

TUBBP5 (Tubulin, Beta Pseudogene 5) is a Pseudogene. GO annotations related to this gene include GTP binding and structural constituent of cytoskeleton.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUBBP5 Gene

Genomics for TUBBP5 Gene

Genomic Location for TUBBP5 Gene

Start:
138,150,113 bp from pter
End:
138,177,433 bp from pter
Size:
27,321 bases
Orientation:
Plus strand

Genomic View for TUBBP5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TUBBP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUBBP5 Gene

No data available for Regulatory Elements for TUBBP5 Gene

Proteins for TUBBP5 Gene

Post-translational modifications for TUBBP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUBBP5 Gene

Domains for TUBBP5 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TUBBP5 Gene

Function for TUBBP5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TUBBP5 Gene

Localization for TUBBP5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TUBBP5 Gene COMPARTMENTS Subcellular localization image for TUBBP5 gene
Compartment Confidence
cytoskeleton 3
cytosol 3
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for TUBBP5 Gene

Pathways for TUBBP5 Gene

SuperPathways for TUBBP5 Gene

No Data Available

Interacting Proteins for TUBBP5 Gene

Gene Ontology (GO) - Biological Process for TUBBP5 Gene

None

No data available for Pathways by source for TUBBP5 Gene

Transcripts for TUBBP5 Gene

mRNA/cDNA for TUBBP5 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TUBBP5 Gene

Tubulin, beta pseudogene 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TUBBP5 Gene

No ASD Table

Relevant External Links for TUBBP5 Gene

GeneLoc Exon Structure for
TUBBP5
ECgene alternative splicing isoforms for
TUBBP5

Expression for TUBBP5 Gene

mRNA expression in normal human tissues for TUBBP5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TUBBP5 Gene

This gene is overexpressed in Esophagus - Mucosa (4.8), Pituitary (4.3), and Testis (4.1).

Integrated Proteomics: protein expression from for TUBBP5 Gene

SOURCE GeneReport for Unigene cluster for TUBBP5 Gene Hs.551805

genes like me logo Genes that share expressions with TUBBP5: view

Orthologs for TUBBP5 Gene

Evolution for TUBBP5 Gene

ENSEMBL:
Gene Tree for TUBBP5 (if available)
TreeFam:
Gene Tree for TUBBP5 (if available)

No data available for Orthologs for TUBBP5 Gene

Paralogs for TUBBP5 Gene

No data available for Paralogs for TUBBP5 Gene

Variants for TUBBP5 Gene

Sequence variations from dbSNP and Humsavar for TUBBP5 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs974 -- 138,177,384(-) TGCTT(C/T)AAAAT nc-transcript-variant
rs975 -- 138,177,371(-) AGCAG(C/G)AGGAG nc-transcript-variant
rs976 -- 138,177,355(-) AAGAC(A/C)CAAAT nc-transcript-variant
rs977 -- 138,177,339(-) AGTGC(A/G)TAGTG nc-transcript-variant
rs1814572 -- 138,176,178(-) CTCGA(C/T)GGCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TUBBP5 Gene

Variant ID Type Subtype PubMed ID
nsv894682 CNV Gain 21882294
nsv831764 CNV Loss 17160897
dgv2429e1 CNV Complex 17122850
nsv894683 CNV Gain 21882294
nsv482947 CNV Loss 15286789
esv27764 CNV Gain+Loss 19812545
nsv894686 CNV Gain 21882294
dgv8465n71 CNV Gain 21882294
dgv2430e1 CNV Complex 17122850
nsv8590 CNV Gain+Loss 18304495
esv1004105 CNV Deletion 20482838
esv1773938 CNV Deletion 17803354
esv997327 CNV Insertion 20482838
esv1243673 CNV Insertion 17803354

Relevant External Links for TUBBP5 Gene

HapMap Linkage Disequilibrium report
TUBBP5

Disorders for TUBBP5 Gene

genes like me logo Genes that share disorders with TUBBP5: view

No data available for UniProtKB/Swiss-Prot for TUBBP5 Gene

Publications for TUBBP5 Gene

  1. A cascade of complex subtelomeric duplications during the evolution of the hominoid and Old World monkey genomes. (PMID: 11731935) van Geel M. … de Jong P.J. (Am. J. Hum. Genet. 2002) 2 3
  2. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3
  3. A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity. (PMID: 23349634) Cloutier P. … Coulombe B. (PLoS Genet. 2013) 3
  4. A COFRADIC protocol to study protein ubiquitination. (PMID: 24816145) Stes E. … Gevaert K. (J. Proteome Res. 2014) 3

Products for TUBBP5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TUBBP5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TUBBP5
    • Block miRNA regulation of TUBBP5 using miScript Target Protectors

    Sources for TUBBP5 Gene

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