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Aliases for TUBBP5 Gene

Aliases for TUBBP5 Gene

  • Tubulin Beta Pseudogene 5 2 3 5
  • Tubulin, Beta Polypeptide Pseudogene 5 2
  • Tubulin, Beta Pseudogene 5 2

External Ids for TUBBP5 Gene

Previous GeneCards Identifiers for TUBBP5 Gene

  • GC09U900291
  • GC09P140186
  • GC09P141044
  • GC09P110512

Summaries for TUBBP5 Gene

GeneCards Summary for TUBBP5 Gene

TUBBP5 (Tubulin Beta Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUBBP5 Gene

Genomics for TUBBP5 Gene

Regulatory Elements for TUBBP5 Gene

Promoters for TUBBP5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TUBBP5 on UCSC Golden Path with GeneCards custom track

Genomic Location for TUBBP5 Gene

Chromosome:
9
Start:
138,150,075 bp from pter
End:
138,177,433 bp from pter
Size:
27,359 bases
Orientation:
Plus strand

Genomic View for TUBBP5 Gene

Genes around TUBBP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUBBP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUBBP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUBBP5 Gene

Proteins for TUBBP5 Gene

Post-translational modifications for TUBBP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUBBP5 Gene

Domains & Families for TUBBP5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TUBBP5 Gene

Function for TUBBP5 Gene

Phenotypes for TUBBP5 Gene

GenomeRNAi human phenotypes for TUBBP5:
genes like me logo Genes that share phenotypes with TUBBP5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUBBP5 Gene

Localization for TUBBP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TUBBP5 Gene

Pathways & Interactions for TUBBP5 Gene

SuperPathways for TUBBP5 Gene

No Data Available

Interacting Proteins for TUBBP5 Gene

Gene Ontology (GO) - Biological Process for TUBBP5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUBBP5 Gene

Drugs & Compounds for TUBBP5 Gene

No Compound Related Data Available

Transcripts for TUBBP5 Gene

mRNA/cDNA for TUBBP5 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TUBBP5 Gene

Tubulin, beta pseudogene 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TUBBP5 Gene

No ASD Table

Relevant External Links for TUBBP5 Gene

GeneLoc Exon Structure for
TUBBP5
ECgene alternative splicing isoforms for
TUBBP5

Expression for TUBBP5 Gene

mRNA expression in normal human tissues for TUBBP5 Gene

mRNA differential expression in normal tissues according to GTEx for TUBBP5 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.8), Pituitary (x4.3), and Testis (x4.1).

Protein differential expression in normal tissues from HIPED for TUBBP5 Gene

This gene is overexpressed in Brain (46.8) and Heart (17.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from for TUBBP5 Gene



SOURCE GeneReport for Unigene cluster for TUBBP5 Gene Hs.551805

genes like me logo Genes that share expression patterns with TUBBP5: view

Protein tissue co-expression partners for TUBBP5 Gene

- Elite partner

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TUBBP5 Gene

Orthologs for TUBBP5 Gene

Evolution for TUBBP5 Gene

ENSEMBL:
Gene Tree for TUBBP5 (if available)
TreeFam:
Gene Tree for TUBBP5 (if available)

No data available for Orthologs for TUBBP5 Gene

Paralogs for TUBBP5 Gene

No data available for Paralogs for TUBBP5 Gene

Variants for TUBBP5 Gene

Sequence variations from dbSNP and Humsavar for TUBBP5 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs974 -- 138,177,384(-) TGCTT(C/T)AAAAT nc-transcript-variant
rs975 -- 138,177,371(-) AGCAG(C/G)AGGAG nc-transcript-variant
rs976 -- 138,177,355(-) AAGAC(A/C)CAAAT nc-transcript-variant
rs977 -- 138,177,339(-) AGTGC(A/G)TAGTG nc-transcript-variant
rs1840733 -- 138,174,508(-) TGGAG(A/G)TAGTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TUBBP5 Gene

Variant ID Type Subtype PubMed ID
nsv894682 CNV Gain 21882294
nsv831764 CNV Loss 17160897
dgv2429e1 CNV Complex 17122850
nsv894683 CNV Gain 21882294
nsv482947 CNV Loss 15286789
esv27764 CNV Gain+Loss 19812545
nsv894686 CNV Gain 21882294
dgv8465n71 CNV Gain 21882294
dgv2430e1 CNV Complex 17122850
nsv8590 CNV Gain+Loss 18304495
esv1004105 CNV Deletion 20482838
esv1773938 CNV Deletion 17803354
esv997327 CNV Insertion 20482838
esv1243673 CNV Insertion 17803354

Relevant External Links for TUBBP5 Gene

HapMap Linkage Disequilibrium report
TUBBP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TUBBP5 Gene

Disorders for TUBBP5 Gene

Relevant External Links for TUBBP5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TUBBP5

No disorders were found for TUBBP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUBBP5 Gene

Publications for TUBBP5 Gene

  1. A cascade of complex subtelomeric duplications during the evolution of the hominoid and Old World monkey genomes. (PMID: 11731935) van Geel M. … de Jong P.J. (Am. J. Hum. Genet. 2002) 2 3 67
  2. A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity. (PMID: 23349634) Cloutier P. … Coulombe B. (PLoS Genet. 2013) 3

Products for TUBBP5 Gene

Sources for TUBBP5 Gene

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