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Aliases for TUBBP5 Gene

Aliases for TUBBP5 Gene

  • Tubulin Beta Pseudogene 5 2 3 5
  • Tubulin, Beta Polypeptide Pseudogene 5 2
  • Tubulin, Beta Pseudogene 5 2

External Ids for TUBBP5 Gene

Previous GeneCards Identifiers for TUBBP5 Gene

  • GC09U900291
  • GC09P140186
  • GC09P141044
  • GC09P110512

Summaries for TUBBP5 Gene

GeneCards Summary for TUBBP5 Gene

TUBBP5 (Tubulin Beta Pseudogene 5) is a Pseudogene.

Additional gene information for TUBBP5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUBBP5 Gene

Genomics for TUBBP5 Gene

Regulatory Elements for TUBBP5 Gene

Enhancers for TUBBP5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H138147 0.7 Ensembl 37.8 -2.3 -2267 0 CTCF ZNF777 RB1 ZIC2 ZNF2 GLIS2 PATZ1 PRDM10 ZNF362 ZNF654 TUBBP5 IL9RP1
GH09H138213 0.4 Ensembl 31.3 +66.1 66126 6 ELF1 SPI1 TUBBP5 FAM157B GC09M138217
GH09H137876 1 Ensembl ENCODE 5.6 -272.1 -272087 2 CTCF MXI1 GLIS2 POLR2A PATZ1 ZNF143 KLF8 ZBTB20 EZH2 MAZ LOC100133077 TUBBP5 NDOR1 CACNA1B
GH09H138210 0.2 Ensembl 7.6 +60.8 60826 0 TUBBP5 FAM157B PIR47004
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TUBBP5 on UCSC Golden Path with GeneCards custom track

Promoters for TUBBP5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000243292 325 800 HDAC1 RB1 SIN3A ZNF76 KLF17 ZNF2 ZEB1 ZNF121 GLIS2 KLF7

Genomic Location for TUBBP5 Gene

Chromosome:
9
Start:
138,150,075 bp from pter
End:
138,177,433 bp from pter
Size:
27,359 bases
Orientation:
Plus strand

Genomic View for TUBBP5 Gene

Genes around TUBBP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUBBP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUBBP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUBBP5 Gene

Proteins for TUBBP5 Gene

Post-translational modifications for TUBBP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUBBP5 Gene

Domains & Families for TUBBP5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TUBBP5 Gene

Function for TUBBP5 Gene

Phenotypes for TUBBP5 Gene

GenomeRNAi human phenotypes for TUBBP5:
genes like me logo Genes that share phenotypes with TUBBP5: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TUBBP5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUBBP5 Gene

Localization for TUBBP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TUBBP5 Gene

Pathways & Interactions for TUBBP5 Gene

SuperPathways for TUBBP5 Gene

No Data Available

Interacting Proteins for TUBBP5 Gene

Gene Ontology (GO) - Biological Process for TUBBP5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUBBP5 Gene

Drugs & Compounds for TUBBP5 Gene

No Compound Related Data Available

Transcripts for TUBBP5 Gene

mRNA/cDNA for TUBBP5 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TUBBP5 Gene

Tubulin, beta pseudogene 5:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TUBBP5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TUBBP5 Gene

No ASD Table

Relevant External Links for TUBBP5 Gene

GeneLoc Exon Structure for
TUBBP5
ECgene alternative splicing isoforms for
TUBBP5

Expression for TUBBP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TUBBP5 Gene

mRNA differential expression in normal tissues according to GTEx for TUBBP5 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.8), Pituitary (x4.3), and Testis (x4.1).

Protein differential expression in normal tissues from HIPED for TUBBP5 Gene

This gene is overexpressed in Brain (46.8) and Heart (17.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for TUBBP5 Gene



Protein tissue co-expression partners for TUBBP5 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TUBBP5 Gene:

TUBBP5

SOURCE GeneReport for Unigene cluster for TUBBP5 Gene:

Hs.551805
genes like me logo Genes that share expression patterns with TUBBP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TUBBP5 Gene

Orthologs for TUBBP5 Gene

Evolution for TUBBP5 Gene

ENSEMBL:
Gene Tree for TUBBP5 (if available)
TreeFam:
Gene Tree for TUBBP5 (if available)

No data available for Orthologs for TUBBP5 Gene

Paralogs for TUBBP5 Gene

No data available for Paralogs for TUBBP5 Gene

Variants for TUBBP5 Gene

Sequence variations from dbSNP and Humsavar for TUBBP5 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000279962 -- 138,159,764(+) TAGGG(C/T)TAAGG intron-variant
rs1000307866 -- 138,159,404(+) GCTGC(A/G)ATTAT intron-variant
rs1000779315 -- 138,166,557(+) GAGGC(C/T)TAAAA intron-variant
rs1000828623 -- 138,171,490(+) ACCTA(C/T)AGTCT intron-variant
rs1001028614 -- 138,177,618(+) TGGGG(A/G)TGCCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TUBBP5 Gene

Variant ID Type Subtype PubMed ID
dgv7729n100 CNV gain 25217958
dgv7730n100 CNV gain 25217958
esv1004105 CNV deletion 20482838
esv1243673 CNV insertion 17803354
esv1773938 CNV deletion 17803354
esv2759722 CNV gain 17122850
esv2762836 CNV loss 21179565
esv27764 CNV gain+loss 19812545
esv3349073 CNV duplication 20981092
esv3545682 CNV deletion 23714750
esv3622056 CNV loss 21293372
esv3622057 CNV gain 21293372
esv997327 CNV insertion 20482838
nsv1041587 CNV gain 25217958
nsv1078094 CNV duplication 25765185
nsv1153919 CNV duplication 26484159
nsv1161919 CNV duplication 26073780
nsv1161920 CNV duplication 26073780
nsv616028 CNV gain 21841781
nsv831764 CNV loss 17160897
nsv8590 CNV gain+loss 18304495
nsv951215 CNV duplication 24416366
nsv957738 CNV deletion 24416366
nsv972812 CNV duplication 23825009

Relevant External Links for TUBBP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TUBBP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TUBBP5 Gene

Disorders for TUBBP5 Gene

Relevant External Links for TUBBP5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TUBBP5

No disorders were found for TUBBP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUBBP5 Gene

Publications for TUBBP5 Gene

  1. A cascade of complex subtelomeric duplications during the evolution of the hominoid and Old World monkey genomes. (PMID: 11731935) van Geel M … de Jong PJ (American journal of human genetics 2002) 2 3 60
  2. A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity. (PMID: 23349634) Cloutier P … Coulombe B (PLoS genetics 2013) 3 60

Products for TUBBP5 Gene

Sources for TUBBP5 Gene

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