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Aliases for TUBA3FP Gene

Aliases for TUBA3FP Gene

  • Tubulin Alpha 3f Pseudogene 2 3 5

External Ids for TUBA3FP Gene

Previous GeneCards Identifiers for TUBA3FP Gene

  • GC22M021360
  • GC22M021366

Summaries for TUBA3FP Gene

GeneCards Summary for TUBA3FP Gene

TUBA3FP (Tubulin Alpha 3f Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUBA3FP Gene

Genomics for TUBA3FP Gene

Regulatory Elements for TUBA3FP Gene

Enhancers for TUBA3FP Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TUBA3FP on UCSC Golden Path with GeneCards custom track

Promoters for TUBA3FP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TUBA3FP on UCSC Golden Path with GeneCards custom track

Genomic Location for TUBA3FP Gene

Chromosome:
22
Start:
21,002,895 bp from pter
End:
21,014,292 bp from pter
Size:
11,398 bases
Orientation:
Minus strand

Genomic View for TUBA3FP Gene

Genes around TUBA3FP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUBA3FP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUBA3FP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUBA3FP Gene

Proteins for TUBA3FP Gene

Post-translational modifications for TUBA3FP Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUBA3FP Gene

Domains & Families for TUBA3FP Gene

Gene Families for TUBA3FP Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TUBA3FP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TUBA3FP Gene

Function for TUBA3FP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUBA3FP Gene

Localization for TUBA3FP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TUBA3FP Gene

Pathways & Interactions for TUBA3FP Gene

SuperPathways for TUBA3FP Gene

No Data Available

Interacting Proteins for TUBA3FP Gene

Gene Ontology (GO) - Biological Process for TUBA3FP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUBA3FP Gene

Drugs & Compounds for TUBA3FP Gene

No Compound Related Data Available

Transcripts for TUBA3FP Gene

mRNA/cDNA for TUBA3FP Gene

Unigene Clusters for TUBA3FP Gene

Tubulin, alpha 3f, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TUBA3FP Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d ^ 4
SP1:
SP2: -
SP3:

Relevant External Links for TUBA3FP Gene

GeneLoc Exon Structure for
TUBA3FP
ECgene alternative splicing isoforms for
TUBA3FP

Expression for TUBA3FP Gene

mRNA expression in normal human tissues for TUBA3FP Gene

mRNA differential expression in normal tissues according to GTEx for TUBA3FP Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.2), Brain - Cerebellum (x6.1), and Pituitary (x5.2).

SOURCE GeneReport for Unigene cluster for TUBA3FP Gene Hs.585006

genes like me logo Genes that share expression patterns with TUBA3FP: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TUBA3FP Gene

Orthologs for TUBA3FP Gene

Evolution for TUBA3FP Gene

ENSEMBL:
Gene Tree for TUBA3FP (if available)
TreeFam:
Gene Tree for TUBA3FP (if available)

No data available for Orthologs for TUBA3FP Gene

Paralogs for TUBA3FP Gene

No data available for Paralogs for TUBA3FP Gene

Variants for TUBA3FP Gene

Sequence variations from dbSNP and Humsavar for TUBA3FP Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs7287388 -- 21,011,185(+) GCAGC(A/G)CGCAA intron-variant
rs7292605 -- 21,010,982(+) TAAAT(A/G)TCACC intron-variant
rs2516552 -- 21,011,598(+) GGGGG(A/T)CGGAG intron-variant
rs8139179 -- 21,012,060(+) gtctt(G/T)tgggg intron-variant
rs389623 -- 21,011,454(+) AGTTC(A/G)GCAAG nc-transcript-variant

Relevant External Links for TUBA3FP Gene

HapMap Linkage Disequilibrium report
TUBA3FP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TUBA3FP Gene

Disorders for TUBA3FP Gene

Relevant External Links for TUBA3FP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TUBA3FP

No disorders were found for TUBA3FP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUBA3FP Gene

Publications for TUBA3FP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  4. Protection from free beta-tubulin by the beta-tubulin binding protein Rbl2p. (PMID: 11739729) Abruzzi K.C. … Solomon F. (Mol. Cell. Biol. 2002) 23
  5. The carboxy-terminal peptide of detyrosinated alpha tubulin provides a minimal system to study the substrate specificity of tubulin-tyrosine ligase. (PMID: 7510228) RA1diger M. … Weber K. (Eur. J. Biochem. 1994) 23

Products for TUBA3FP Gene

Sources for TUBA3FP Gene

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