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Aliases for TUBA3FP Gene

Aliases for TUBA3FP Gene

  • Tubulin Alpha 3f Pseudogene 2 3 5

External Ids for TUBA3FP Gene

Previous GeneCards Identifiers for TUBA3FP Gene

  • GC22M021360
  • GC22M021366
  • GC22M021002

Summaries for TUBA3FP Gene

GeneCards Summary for TUBA3FP Gene

TUBA3FP (Tubulin Alpha 3f Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUBA3FP Gene

Genomics for TUBA3FP Gene

Regulatory Elements for TUBA3FP Gene

Enhancers for TUBA3FP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G020494 1.8 FANTOM5 ENCODE dbSUPER 18.9 +518.4 518449 2.7 CREB3L1 FEZF1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 SP3 DGCR8 LOC100420177 RPL7AP70 THAP7 ENSG00000273343 THAP7-AS1 RPL8P5 TUBA3FP SCARF2 ABHD17AP4
GH22G020961 1.2 Ensembl ENCODE 20.5 +52.3 52305 0.9 HDGF PKNOX1 ARNT ZFP64 ARID4B YBX1 ZNF143 KLF13 REST ZNF623 DGCR8 TUBA3FP CCDC116 THAP7 THAP7-AS1 LOC100420177 SCARF2 ENSG00000273342 AIFM3 LINC01637
GH22G021577 1.1 ENCODE dbSUPER 20.3 -564.1 -564071 1.2 HNRNPUL1 HDGF ZFP64 ZNF138 ZNF654 ZNF680 CEBPB ZNF426 REST ZNF623 CCDC116 TUBA3FP IGLV5-52 YDJC ABHD17AP4 ENSG00000272779 THAP7-AS1 ENSG00000273342 THAP7 ENSG00000275293
GH22G020606 1 ENCODE 20.4 +407.6 407559 1.3 HDGF ATF1 CREB3L1 ZFP64 ARID4B SIN3A ZNF2 ZNF48 ZNF143 KLF13 DGCR8 TUBA3FP THAP7 THAP7-AS1 PI4KA LOC100420177 SCARF2 RPL7AP70 SERPIND1 SMPD4P1
GH22G020236 1.8 FANTOM5 Ensembl ENCODE dbSUPER 9.9 +775.0 775016 5.1 PKNOX1 ATF1 AGO1 ZNF2 ZNF121 GLIS2 ZNF143 KDM4B KLF13 TAF15 LOC100420177 THAP7 THAP7-AS1 DGCR8 TUBA3FP PIR46599 LOC105372863
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TUBA3FP on UCSC Golden Path with GeneCards custom track

Promoters for TUBA3FP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000143968 187 601 HDGF PKNOX1 ATF1 CREB3L1 FEZF1 GLIS2 FOS KLF13 SP3 NCOA1

Genomic Location for TUBA3FP Gene

Chromosome:
22
Start:
21,008,193 bp from pter
End:
21,014,292 bp from pter
Size:
6,100 bases
Orientation:
Minus strand

Genomic View for TUBA3FP Gene

Genes around TUBA3FP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUBA3FP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUBA3FP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUBA3FP Gene

Proteins for TUBA3FP Gene

Post-translational modifications for TUBA3FP Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUBA3FP Gene

Domains & Families for TUBA3FP Gene

Gene Families for TUBA3FP Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TUBA3FP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TUBA3FP Gene

Function for TUBA3FP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUBA3FP Gene

Localization for TUBA3FP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TUBA3FP Gene

Pathways & Interactions for TUBA3FP Gene

SuperPathways for TUBA3FP Gene

No Data Available

Interacting Proteins for TUBA3FP Gene

Gene Ontology (GO) - Biological Process for TUBA3FP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUBA3FP Gene

Drugs & Compounds for TUBA3FP Gene

No Compound Related Data Available

Transcripts for TUBA3FP Gene

mRNA/cDNA for TUBA3FP Gene

Unigene Clusters for TUBA3FP Gene

Tubulin, alpha 3f, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TUBA3FP Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d ^ 4
SP1:
SP2: -
SP3:

Relevant External Links for TUBA3FP Gene

GeneLoc Exon Structure for
TUBA3FP
ECgene alternative splicing isoforms for
TUBA3FP

Expression for TUBA3FP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TUBA3FP Gene

mRNA differential expression in normal tissues according to GTEx for TUBA3FP Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.2), Brain - Cerebellum (x6.1), and Pituitary (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of TUBA3FP Gene:

TUBA3FP

SOURCE GeneReport for Unigene cluster for TUBA3FP Gene:

Hs.585006
genes like me logo Genes that share expression patterns with TUBA3FP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TUBA3FP Gene

Orthologs for TUBA3FP Gene

Evolution for TUBA3FP Gene

ENSEMBL:
Gene Tree for TUBA3FP (if available)
TreeFam:
Gene Tree for TUBA3FP (if available)

No data available for Orthologs for TUBA3FP Gene

Paralogs for TUBA3FP Gene

No data available for Paralogs for TUBA3FP Gene

Variants for TUBA3FP Gene

Sequence variations from dbSNP and Humsavar for TUBA3FP Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000168107 -- 21,012,780(+) TGCTT(C/T)TCCTT intron-variant, upstream-variant-2KB
rs1000227427 -- 21,009,343(+) TTCTT(C/T)CCGTA nc-transcript-variant, upstream-variant-2KB
rs1000476368 -- 21,014,262(+) ACCGC(G/T)TGGCG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000564618 -- 21,010,512(+) GAAAT(A/G)CTGCA intron-variant
rs1002108004 -- 21,016,191(+) CATGT(A/G)ATGCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TUBA3FP Gene

Variant ID Type Subtype PubMed ID
dgv4483n100 CNV gain 25217958
dgv7993n54 CNV gain 21841781
dgv7994n54 CNV gain 21841781
esv2678175 CNV deletion 23128226
esv2763693 CNV gain 21179565
esv3647304 CNV loss 21293372
esv3647305 CNV gain 21293372
esv3647307 CNV loss 21293372
esv3647308 CNV loss 21293372
esv3893441 CNV gain+loss 25118596
nsv1056614 CNV loss 25217958
nsv1062280 CNV gain 25217958
nsv1065617 CNV gain 25217958
nsv3563 CNV deletion 18451855
nsv436864 CNV insertion 17901297
nsv471185 CNV loss 18288195
nsv523162 CNV loss 19592680
nsv588305 CNV loss 21841781
nsv588306 CNV gain 21841781
nsv828960 CNV loss 20364138
nsv828961 CNV gain 20364138
nsv828962 CNV loss 20364138
nsv834141 CNV loss 17160897
nsv834142 CNV gain 17160897
nsv964590 CNV duplication 23825009

Relevant External Links for TUBA3FP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TUBA3FP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TUBA3FP Gene

Disorders for TUBA3FP Gene

Relevant External Links for TUBA3FP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TUBA3FP

No disorders were found for TUBA3FP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUBA3FP Gene

Publications for TUBA3FP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
  4. Protection from free beta-tubulin by the beta-tubulin binding protein Rbl2p. (PMID: 11739729) Abruzzi K.C. … Solomon F. (Mol. Cell. Biol. 2002) 22 64
  5. The carboxy-terminal peptide of detyrosinated alpha tubulin provides a minimal system to study the substrate specificity of tubulin-tyrosine ligase. (PMID: 7510228) RA1diger M. … Weber K. (Eur. J. Biochem. 1994) 22 64

Products for TUBA3FP Gene

Sources for TUBA3FP Gene

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