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Aliases for TTYH3 Gene

Aliases for TTYH3 Gene

  • Tweety Family Member 3 2 3 5
  • HTTY3 3 4
  • Tweety Homolog 3 (Drosophila) 2
  • Tweety Homolog 3 3
  • KIAA1691 4

External Ids for TTYH3 Gene

Previous GeneCards Identifiers for TTYH3 Gene

  • GC07P002413
  • GC07P002444

Summaries for TTYH3 Gene

Entrez Gene Summary for TTYH3 Gene

  • This gene encodes a member of the tweety family of proteins. Members of this family function as chloride anion channels. The encoded protein functions as a calcium(2+)-activated large conductance chloride(-) channel. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTYH3 Gene

TTYH3 (Tweety Family Member 3) is a Protein Coding gene. Among its related pathways are Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds and Ion channel transport. GO annotations related to this gene include chloride channel activity and intracellular calcium activated chloride channel activity. An important paralog of this gene is TTYH2.

UniProtKB/Swiss-Prot for TTYH3 Gene

  • Probable large-conductance Ca(2+)-activated chloride channel. May play a role in Ca(2+) signal transduction.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTYH3 Gene

Genomics for TTYH3 Gene

Regulatory Elements for TTYH3 Gene

Promoters for TTYH3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TTYH3 on UCSC Golden Path with GeneCards custom track

Genomic Location for TTYH3 Gene

Chromosome:
7
Start:
2,631,951 bp from pter
End:
2,664,802 bp from pter
Size:
32,852 bases
Orientation:
Plus strand

Genomic View for TTYH3 Gene

Genes around TTYH3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTYH3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTYH3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTYH3 Gene

Proteins for TTYH3 Gene

  • Protein details for TTYH3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C0H2-TTYH3_HUMAN
    Recommended name:
    Protein tweety homolog 3
    Protein Accession:
    Q9C0H2
    Secondary Accessions:
    • A4D201
    • B7WP98
    • Q6L749
    • Q6ZVG3
    • Q8TEG6

    Protein attributes for TTYH3 Gene

    Size:
    523 amino acids
    Molecular mass:
    57545 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • The current is completely inhibited by the addition of an anion permeability inhibitor. Addition of a Ca(2+) ionophore induces an outward-rectified current in mock-transfected cells, but it introduced an overt linear current in TTYH3-transfected cells.
    SequenceCaution:
    • Sequence=BAB21782.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=EAL23958.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for TTYH3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TTYH3 Gene

Proteomics data for TTYH3 Gene at MOPED

Post-translational modifications for TTYH3 Gene

Other Protein References for TTYH3 Gene

No data available for DME Specific Peptides for TTYH3 Gene

Domains & Families for TTYH3 Gene

Protein Domains for TTYH3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TTYH3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9C0H2

UniProtKB/Swiss-Prot:

TTYH3_HUMAN :
  • Belongs to the tweety family.
Family:
  • Belongs to the tweety family.
genes like me logo Genes that share domains with TTYH3: view

No data available for Gene Families for TTYH3 Gene

Function for TTYH3 Gene

Molecular function for TTYH3 Gene

UniProtKB/Swiss-Prot Function:
Probable large-conductance Ca(2+)-activated chloride channel. May play a role in Ca(2+) signal transduction.
genes like me logo Genes that share phenotypes with TTYH3: view

Animal Model Products

  • Taconic Biosciences Mouse Models for TTYH3

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TTYH3 Gene

Localization for TTYH3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TTYH3 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TTYH3 Gene COMPARTMENTS Subcellular localization image for TTYH3 gene
Compartment Confidence
extracellular 5
plasma membrane 5

No data available for Gene Ontology (GO) - Cellular Components for TTYH3 Gene

Pathways & Interactions for TTYH3 Gene

genes like me logo Genes that share pathways with TTYH3: view

Pathways by source for TTYH3 Gene

Gene Ontology (GO) - Biological Process for TTYH3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006821 chloride transport IDA 16219661
GO:0034220 ion transmembrane transport TAS --
GO:0055085 transmembrane transport TAS --
genes like me logo Genes that share ontologies with TTYH3: view

No data available for SIGNOR curated interactions for TTYH3 Gene

Drugs & Compounds for TTYH3 Gene

(1) Additional Compounds for TTYH3 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Chloride ion
  • Bertholite
  • Chloor
  • Chlor
  • Chlore
  • Chloride
16887-00-6
genes like me logo Genes that share compounds with TTYH3: view

Transcripts for TTYH3 Gene

Unigene Clusters for TTYH3 Gene

Tweety homolog 3 (Drosophila):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTYH3 Gene

No ASD Table

Relevant External Links for TTYH3 Gene

GeneLoc Exon Structure for
TTYH3
ECgene alternative splicing isoforms for
TTYH3

Expression for TTYH3 Gene

mRNA expression in normal human tissues for TTYH3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for TTYH3 Gene

This gene is overexpressed in Amniocyte (18.3), Peripheral blood mononuclear cells (12.7), Adrenal (10.9), Urine (10.0), and Bone (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for TTYH3 Gene



SOURCE GeneReport for Unigene cluster for TTYH3 Gene Hs.440899

mRNA Expression by UniProt/SwissProt for TTYH3 Gene

Q9C0H2-TTYH3_HUMAN
Tissue specificity: Expressed in excitable tissues. Expressed in the brain, heart, skeletal muscle, colon, spleen, kidney and peripheral blood leukocytes.
genes like me logo Genes that share expression patterns with TTYH3: view

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and Protein tissue co-expression partners for TTYH3 Gene

Orthologs for TTYH3 Gene

This gene was present in the common ancestor of animals.

Orthologs for TTYH3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TTYH3 35
  • 91.57 (n)
  • 95.21 (a)
TTYH3 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TTYH3 35
  • 88.84 (n)
  • 91.99 (a)
TTYH3 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ttyh3 35
  • 88.95 (n)
  • 94.83 (a)
Ttyh3 16
Ttyh3 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TTYH3 35
  • 99.36 (n)
  • 99.62 (a)
TTYH3 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ttyh3 35
  • 88.38 (n)
  • 94.83 (a)
oppossum
(Monodelphis domestica)
Mammalia TTYH3 36
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TTYH3 36
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves TTYH3 35
  • 74.19 (n)
  • 79.18 (a)
TTYH3 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TTYH3 36
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.18570 35
ttyh3 35
  • 70.92 (n)
  • 74.85 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC556314 35
  • 70.64 (n)
  • 71.35 (a)
ttyh3a 36
  • 69 (a)
OneToMany
ttyh3b 36
  • 64 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.7521 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000860 35
  • 48.08 (n)
  • 30 (a)
fruit fly
(Drosophila melanogaster)
Insecta tty 35
  • 44.83 (n)
  • 28.83 (a)
CG3638 36
  • 17 (a)
ManyToMany
tty 36
  • 13 (a)
ManyToMany
Species with no ortholog for TTYH3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TTYH3 Gene

ENSEMBL:
Gene Tree for TTYH3 (if available)
TreeFam:
Gene Tree for TTYH3 (if available)

Paralogs for TTYH3 Gene

Paralogs for TTYH3 Gene

(3) SIMAP similar genes for TTYH3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TTYH3: view

Variants for TTYH3 Gene

Sequence variations from dbSNP and Humsavar for TTYH3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs13188 -- 2,663,830(+) TGCCC(A/G)TCTGT utr-variant-3-prime
rs798478 -- 2,658,469(-) CCCAC(A/G)TCAAC intron-variant
rs798479 -- 2,651,567(-) TAGGG(G/T)GCGCT intron-variant
rs887453 -- 2,653,964(-) TGTGT(A/G)GGGGC intron-variant
rs867418 -- 2,644,969(-) CTGCT(C/G)GGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTYH3 Gene

Variant ID Type Subtype PubMed ID
dgv7116n71 CNV Loss 21882294
nsv887300 CNV Loss 21882294
nsv471227 CNV Loss 18288195
dgv401n21 CNV Loss 19592680
dgv7121n71 CNV Loss 21882294
nsv887303 CNV Loss 21882294
dgv7122n71 CNV Loss 21882294
nsv471238 CNV Gain 18288195
nsv887305 CNV Loss 21882294
nsv5618 CNV Insertion 18451855
nsv464257 CNV Loss 19166990
nsv823983 CNV Gain 20364138

Variation tolerance for TTYH3 Gene

Residual Variation Intolerance Score: 29.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.23; 40.22% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TTYH3 Gene

HapMap Linkage Disequilibrium report
TTYH3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTYH3 Gene

Disorders for TTYH3 Gene

Relevant External Links for TTYH3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTYH3

No disorders were found for TTYH3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTYH3 Gene

Publications for TTYH3 Gene

  1. A novel human Cl(-) channel family related to Drosophila flightless locus. (PMID: 15010458) Suzuki M. … Mizuno A. (J. Biol. Chem. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Protein interaction discovery using parallel analysis of translated ORFs (PLATO). (PMID: 23503679) Zhu J. … Elledge S.J. (Nat. Biotechnol. 2013) 3
  4. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S. … Drake R.R. (Proteomics 2013) 3
  5. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. (PMID: 23128233) Jostins L. … Cho J.H. (Nature 2012) 3

Products for TTYH3 Gene

Sources for TTYH3 Gene

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