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Aliasesfor TTTY9B gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section GeneCards Plus Subcategory (RNA class): lncRNAQuality score for this RNA gene is 5 Aliases Testis-Specific Transcript, Y-Linked 9B (Non-Protein Coding) 1 2 TTTY92 Non-Protein Coding RNA 1321 TTTY9A2 Testis-Specific Transcript, Y-Linked 9B1 TTY92 NCRNA001322
External Ids: HGNC: 32425 1 Entrez Gene: 425057 2 Ensembl: ENSG00000131007 7 Export aliases for TTTY9B gene to outside databases Previous GC identifers: GC0YU900277 GC0YM019202 GC0YM020744 GC0YM020746
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Summariesfor TTTY9B gene (According to Entrez Gene ,
GeneCards ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section GeneCards Plus Entrez Gene summary for TTTY9B Gene: This gene is transcribed but does not appear to encode a protein. Two identical copies of this gene are present ina palindromic region (P4) on chromosome Y. This record represents the more centromeric copy. (provided by RefSeq,Jul 2008) GeneCards Summary for TTTY9B Gene: TTTY9B (testis-specific transcript, Y-linked 9B (non-protein coding)) is an RNA gene, and is affiliated with the lncRNA class. fRNAdb sequence ontology for TTTY9B: antisense_RNA - Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.
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Genomic Viewsfor TTTY9B gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 75) ,
Regulatory elements and Epigenetics data according to
QIAGEN , and/or
SwitchGear Genomics )About This Section GeneCards Plus Regulatory elements: Regulatory transcription factor binding sites in the TTTY9B gene promoter:IRF-1 STAT5A Cdc5 NF-E2 p45 E47 SRY POU2F1 POU2F1a Hand1 NF-E2 Other transcription factors Search Chromatin IP Primers for TTTY9B Epigenetics: DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TTTY9B
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: Yq11.221 Ensembl cytogenetic band: Yq11.222 HGNC cytogenetic band: Yq11.221 TTTY9B Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome Y GeneLoc Exon Structure
GeneLoc location for GC0YM020748: view genomic region
(about GC identifiers )
Start: 20,743,092 bp from pter End:
20,752,407 bp from pter
Size: 9,316 bases Orientation:
minus strand
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Proteinsfor TTTY9B gene
(According to
1 UniProtKB ,
HORDE ,
2 neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
Antibodies by
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam ,
Cloud-Clone Corp ,
antibodies-online ,
and/or others.)
About This Section GeneCards Plus UniProtKB: --
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Domains /for TTTY9B gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section GeneCards Plus HGNC Gene Families: LNCRNA: Long non-coding RNAs
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Functionfor TTTY9B gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
genOway ,
QIAGEN
and/or HOMER ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
Gene Editing from DNA2.0 ,
Clones from OriGene ,
GenScript ,
Sino Biological ,
DNA2.0 ,
Vector BioLabs
and/or Addgene ,
Cell Lines from GenScript ,
ESI BIO ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Flow cytometry from eBioscience ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
Animal Models: Cell Line GenScript Custom overexpressing Cell Line Services for TTTY9B Browse ESI BIO Cell Lines and PureStem Progenitors for TTTY9B In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TTTY9B
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Localizationfor TTTY9B gene
(According to UniProtKB , COMPARTMENTS Subcellular localization database ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
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Pathways & Interactionsfor TTTY9B gene
(SuperPaths according to PathCards ,
Pathways according to
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
QIAGEN ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene) .
About This Section GeneCards Plus
Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TTTY9B Interactions: Search GeneGlobe Interaction Network for TTTY9B
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Drugs & Compoundsfor TTTY9B gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience ,
ApexBio ,
HMDB ,
BitterDB , and/or
Novoseek ,
Ligands according to IUPHAR ,
and Drugs according to DrugBank ,
Enzo Life Sciences , and/or
PharmGKB )
About This Section GeneCards Plus
Browse compounds at ApexBio Browse Tocris compounds for TTTY9B
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Transcriptsfor TTTY9B gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
OriGene ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
and/or Addgene ,
Primers from
OriGene , and/or
QIAGEN ,
Flow cytometry from eBioscience
)About This Section GeneCards Plus 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000433794(antisense) ENST00000545582(antisense) GeneLoc Exon Structure
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Expression for TTTY9B gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MaxQB ,
plus additional links to
SOURCE , and/or
BioGPS , and/or
UniProtKB ,QIAGEN ,
Primers from
OriGene , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GeneCards Plus
Expression evidence for TTTY9B:RNAdb
TTTY9B expression in normal human tissues
(normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS 2/3 CGAP TAG: -- About this image
TTTY9B Protein expression data from MOPED1 2 3 : Custom PCR Arrays for TTTY9B Primer Browse OriGene qPCR Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat TTTY9B Search QuantiTect SYBR Green Assays in human, mouse, rat TTTY9B QuantiFast Probe-based Assays in human mouse rat In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TTTY9B
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Orthologsfor TTTY9B gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section GeneCards Plus
ENSEMBL Gene Tree for TTTY9B (if available)TreeFam Gene Tree for TTTY9B (if available)
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Paralogsfor TTTY9B gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section GeneCards Plus
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Genomic Variantsfor TTTY9B gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) , the Human Cytochrome P450 Allele
Nomenclature Database , and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN )
About This Section GeneCards Plus Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical Chr Y pos Sequence # AA Type More # Allele Pop Total More
HapMap Linkage Disequilibrium report for TTTY9B (20743092 - 20752407 bp)
Structural Variations Database of Genomic Variants (DGV) 2 variations for TTTY9B : About this table Site Specific Mutation Identification with PCR Assays
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Disorders
/ Diseasesfor TTTY9B gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section GeneCards Plus
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Publicationsfor TTTY9B gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section GeneCards Plus PubMed articles for TTTY9B gene integrated from 10 sources :(articles sorted by number of sources associating them with TTTY9B) Utopia : connect your pdf to the dynamic
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PubMed id 12815422) 1 , 3(Nature 2003) Discrimination of non-protein-coding transcripts from protein-coding mRNA. (PubMed id 17114936) 1 (RNA Biol 2006) (PubMed id 15608161) 10
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External Searches for TTTY9B gene (in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section GeneCards Plus
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Genome Databases showing TTTY9B gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section GeneCards Plus
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Other Databases showing TTTY9B gene
(According to HUGE )
About This Section GeneCards Plus --
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Specialized Databases showing TTTY9B gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , UniProtKB/TrEMBL , and/or others, e.g. Wikipedia and GeneReviews , via UniProtKB/Swiss-Prot )About This Section GeneCards Plus
Name Description PharmGKB entry for TTTY9B Pharmacogenomics, SNPs, Pathways
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About This Section GeneCards Plus Patent Information for TTTY9B gene: TTTY9B GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TTTY9B gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , eBioscience , antibodies-online , and/or others, Gene Editing from DNA2.0 . Clones from OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Addgene , Cell lines from GenScript , and ESI BIO , Flow cytometery from eBioscience , PCR Arrays from QIAGEN , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , Enzo Life Sciences , and/or
ApexBio , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from genOway )About This Section GeneCards Plus
Block miRNA regulation of human, mouse, rat TTTY9B using miScript Target Protectors SeqTarget long-range PCR primers for resequencing TTTY9B DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TTTY9B Predesigned siRNA for gene silencing in human mouse rat QuantiFast Probe-based Assays in human mouse rat Search QuantiTect SYBR Green Assays in human, mouse, rat TTTY9B Custom PCR Arrays for TTTY9B Search Chromatin IP Primers for TTTY9B Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat TTTY9B Search GeneGlobe Interaction Network for TTTY9B Regulatory tfbs in TTTY9B promoter
Search Tocris compounds for TTTY9B
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TTTY9B
Search ThermoFisher Antibodies for TTTY9B
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TTTY9B
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