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Aliases for TTTY9B Gene

Subcategory (RNA class) for TTTY9B Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY9B Gene

  • Testis-Specific Transcript, Y-Linked 9B (Non-Protein Coding) 2 3
  • Testis-Specific Transcript, Y-Linked 9, Centromeric 3
  • Testis-Specific Transcript, Y-Linked 9B 2
  • Non-Protein Coding RNA 132 2
  • Testis Transcript Y 9 3
  • NCRNA00132 3
  • TTTY9A 3
  • TTTY9 3
  • TTY9 3

External Ids for TTTY9B Gene

ORGUL Members for TTTY9B Gene

Previous GeneCards Identifiers for TTTY9B Gene

  • GC0YU900277
  • GC0YM019202
  • GC0YM020744
  • GC0YM020746
  • GC0YM020748

Summaries for TTTY9B Gene

Entrez Gene Summary for TTTY9B Gene

  • This gene is transcribed but does not appear to encode a protein. Two identical copies of this gene are present in a palindromic region (P4) on chromosome Y. This record represents the more centromeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY9B Gene

TTTY9B (Testis-Specific Transcript, Y-Linked 9B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for TTTY9B Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY9B Gene

Genomics for TTTY9B Gene

Regulatory Elements for TTTY9B Gene

Genomic Location for TTTY9B Gene

Start:
18,581,206 bp from pter
End:
18,590,521 bp from pter
Size:
9,316 bases
Orientation:
Minus strand

Genomic View for TTTY9B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY9B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY9B Gene

Proteins for TTTY9B Gene

Post-translational modifications for TTTY9B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY9B Gene

Domains for TTTY9B Gene

Gene Families for TTTY9B Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTTY9B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY9B Gene

Function for TTTY9B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY9B Gene

Localization for TTTY9B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY9B Gene

Pathways for TTTY9B Gene

SuperPathways for TTTY9B Gene

No Data Available

Interacting Proteins for TTTY9B Gene

Gene Ontology (GO) - Biological Process for TTTY9B Gene

None

No data available for Pathways by source for TTTY9B Gene

Transcripts for TTTY9B Gene

mRNA/cDNA for TTTY9B Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTTY9B Gene

Testis-specific transcript, Y-linked 9B (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY9B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY9B Gene

No ASD Table

Relevant External Links for TTTY9B Gene

GeneLoc Exon Structure for
TTTY9B
ECgene alternative splicing isoforms for
TTTY9B

Expression for TTTY9B Gene

mRNA expression in normal human tissues for TTTY9B Gene

SOURCE GeneReport for Unigene cluster for TTTY9B Gene Hs.724282

genes like me logo Genes that share expressions with TTTY9B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TTTY9B Gene

Orthologs for TTTY9B Gene

Evolution for TTTY9B Gene

ENSEMBL:
Gene Tree for TTTY9B (if available)
TreeFam:
Gene Tree for TTTY9B (if available)

No data available for Orthologs for TTTY9B Gene

Paralogs for TTTY9B Gene

No data available for Paralogs for TTTY9B Gene

Variants for TTTY9B Gene

Sequence variations from dbSNP and Humsavar for TTTY9B Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs199752024 -- 18,591,443(+) GGCTG(C/G)AGCTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY9B Gene

Variant ID Type Subtype PubMed ID
esv1670141 OTHER Inversion 17803354
dgv2500e1 CNV Complex 17122850

Relevant External Links for TTTY9B Gene

HapMap Linkage Disequilibrium report
TTTY9B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTTY9B Gene

Disorders for TTTY9B Gene

No disorders were found for TTTY9B Gene.

No data available for UniProtKB/Swiss-Prot for TTTY9B Gene

Publications for TTTY9B Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 2 3
  2. Discrimination of non-protein-coding transcripts from protein-coding mRNA. (PMID: 17114936) Frith M.C. … Mattick J.S. (RNA Biol 2006) 3

Products for TTTY9B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY9B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY9B
    • Block miRNA regulation of TTTY9B using miScript Target Protectors

    Sources for TTTY9B Gene

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