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TTTY9B Gene(RNA Gene)

Testis-Specific Transcript, Y-Linked 9B (Non-Protein Coding)

GCID:
GC0YM018581
GIFtS:
18
Genes Participants
UDN Logo

Aliases for TTTY9B Gene

Subcategory (RNA class) for TTTY9B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY9B Gene

  • Testis-Specific Transcript, Y-Linked 9B (Non-Protein Coding) 2 3 5
  • Testis-Specific Transcript, Y-Linked 9, Centromeric 3
  • Testis-Specific Transcript, Y-Linked 9B 2
  • Non-Protein Coding RNA 132 2
  • Testis Transcript Y 9 3
  • NCRNA00132 3
  • TTTY9A 3
  • TTTY9 3
  • TTY9 3

External Ids for TTTY9B Gene

Previous GeneCards Identifiers for TTTY9B Gene

  • GC0YU900277
  • GC0YM019202
  • GC0YM020744
  • GC0YM020746
  • GC0YM020748

Summaries for TTTY9B Gene

Entrez Gene Summary for TTTY9B Gene

  • This gene is transcribed but does not appear to encode a protein. Two identical copies of this gene are present in a palindromic region (P4) on chromosome Y. This record represents the more centromeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY9B Gene

TTTY9B (Testis-Specific Transcript, Y-Linked 9B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY9B Gene

Genomics for TTTY9B Gene

Products:

  1. Regulatory Element

Regulatory Elements for TTTY9B Gene


Transcription factor binding sites by QIAGEN in the TTTY9B gene promoter:

Genomic Location for TTTY9B Gene

Chromosome:
Y
Start:
18,581,206 bp from pter
End:
18,590,521 bp from pter
Size:
9,316 bases
Orientation:
Minus strand

Genomic View for TTTY9B Gene

Genes around TTTY9B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY9B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY9B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TTTY9B Gene

Proteins for TTTY9B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TTTY9B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY9B Gene

Domains & Families for TTTY9B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY9B Gene

Function for TTTY9B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY9B Gene

Localization for TTTY9B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY9B Gene

Pathways & Interactions for TTTY9B Gene

SuperPathways for TTTY9B Gene

PathCards logo More details on SuperPathways for TTTY9B
No Data Available

Interacting Proteins for TTTY9B Gene

Gene Ontology (GO) - Biological Process for TTTY9B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY9B Gene

Drugs & Compounds for TTTY9B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TTTY9B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TTTY9B Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTTY9B Gene

Testis-specific transcript, Y-linked 9B (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY9B Gene

No ASD Table

Relevant External Links for TTTY9B Gene

GeneLoc Exon Structure for
TTTY9B
ECgene alternative splicing isoforms for
TTTY9B

Expression for TTTY9B Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTTY9B Gene

mRNA expression in normal human tissues for TTTY9B Gene
mRNA expression by BioGPS for TTTY9B GenemRNA expression by GTEx for TTTY9B Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY9B Gene:

TTTY9B

SOURCE GeneReport for Unigene cluster for TTTY9B Gene:

Hs.724282
genes like me logo Genes that share expression patterns with TTTY9B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY9B Gene

Orthologs for TTTY9B Gene

Evolution for TTTY9B Gene

ENSEMBL:
Gene Tree for TTTY9B (if available)
TreeFam:
Gene Tree for TTTY9B (if available)

No data available for Orthologs for TTTY9B Gene

Paralogs for TTTY9B Gene

No data available for Paralogs for TTTY9B Gene

Variants for TTTY9B Gene

Sequence variations from dbSNP and Humsavar for TTTY9B Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs199752024 -- 18,591,443(+) GGCTG(C/G)AGCTG upstream-variant-2KB
rs233740 -- 18,586,882(-) ACTTA(A/G)CACTG intron-variant
rs756704725 -- 18,590,916(+) TTAGT(-/G)GGGGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY9B Gene

Variant ID Type Subtype PubMed ID
esv1670141 OTHER inversion 17803354
esv2758907 CNV loss 17122850
esv3575100 CNV loss 25503493
esv3575101 CNV loss 25503493
esv3577592 CNV gain 25503493

Relevant External Links for TTTY9B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY9B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY9B Gene

Disorders for TTTY9B Gene

Relevant External Links for TTTY9B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY9B

No disorders were found for TTTY9B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY9B Gene

Publications for TTTY9B Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 2 3 64
  2. Discrimination of non-protein-coding transcripts from protein-coding mRNA. (PMID: 17114936) Frith M.C. … Mattick J.S. (RNA Biol 2006) 3 64

Products for TTTY9B Gene

Sources for TTTY9B Gene

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