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Aliases for TTTY5 Gene

Subcategory (RNA class) for TTTY5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY5 Gene

  • Testis-Specific Transcript, Y-Linked 5 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 126 2 3
  • Testis-Specific Transcript, Y-Linked 5 2
  • Transcript Y 5 3
  • NCRNA00126 3
  • LINC00126 3
  • TTY5 3

External Ids for TTTY5 Gene

Previous GeneCards Identifiers for TTTY5 Gene

  • GC0YU990043
  • GC0YM023289
  • GC0YM023290
  • GC0YM022782
  • GC0YM024442
  • GC0YM017603

Summaries for TTTY5 Gene

Entrez Gene Summary for TTTY5 Gene

  • There is a single copy of this gene on chromosome Y at the center of the P3 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY5 Gene

TTTY5 (Testis-Specific Transcript, Y-Linked 5 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY5 Gene

Genomics for TTTY5 Gene

Regulatory Elements for TTTY5 Gene


Genomic Location for TTTY5 Gene

Chromosome:
Y
Start:
22,296,798 bp from pter
End:
22,298,876 bp from pter
Size:
2,079 bases
Orientation:
Minus strand

Genomic View for TTTY5 Gene

Genes around TTTY5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY5 Gene

Proteins for TTTY5 Gene

Post-translational modifications for TTTY5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY5 Gene

Domains & Families for TTTY5 Gene

Suggested Antigen Peptide Sequences for TTTY5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TTTY5 Gene

Function for TTTY5 Gene

genes like me logo Genes that share phenotypes with TTTY5: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY5 Gene

Localization for TTTY5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY5 Gene

Pathways & Interactions for TTTY5 Gene

SuperPathways for TTTY5 Gene

No Data Available

Interacting Proteins for TTTY5 Gene

Gene Ontology (GO) - Biological Process for TTTY5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY5 Gene

Drugs & Compounds for TTTY5 Gene

No Compound Related Data Available

Transcripts for TTTY5 Gene

mRNA/cDNA for TTTY5 Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTTY5 Gene

Testis-specific transcript, Y-linked 5 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY5 Gene

No ASD Table

Relevant External Links for TTTY5 Gene

GeneLoc Exon Structure for
TTTY5
ECgene alternative splicing isoforms for
TTTY5

Expression for TTTY5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTTY5 Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY5 Gene:

TTTY5

SOURCE GeneReport for Unigene cluster for TTTY5 Gene:

Hs.121389
genes like me logo Genes that share expression patterns with TTTY5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY5 Gene

Orthologs for TTTY5 Gene

Evolution for TTTY5 Gene

ENSEMBL:
Gene Tree for TTTY5 (if available)
TreeFam:
Gene Tree for TTTY5 (if available)

No data available for Orthologs for TTTY5 Gene

Paralogs for TTTY5 Gene

No data available for Paralogs for TTTY5 Gene

Variants for TTTY5 Gene

Sequence variations from dbSNP and Humsavar for TTTY5 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs1003382468 -- 22,298,016(+) TCTCC(A/G)GGACG intron-variant
rs1004008046 -- 22,297,080(+) GTGCA(C/T)GTTCC nc-transcript-variant
rs1005571238 -- 22,299,711(+) AGACT(C/G)CTAGG upstream-variant-2KB
rs1005623443 -- 22,298,113(+) AGTAC(A/T)TGGCC intron-variant
rs1012199417 -- 22,296,735(+) GCTGC(A/G)CTGGC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TTTY5 Gene

Variant ID Type Subtype PubMed ID
esv2758908 CNV gain+loss 17122850
nsv1140101 CNV duplication 24896259
nsv442821 CNV loss 18776908
nsv471612 CNV loss 15918152
nsv515226 CNV loss 21397061

Relevant External Links for TTTY5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY5 Gene

Disorders for TTTY5 Gene

Relevant External Links for TTTY5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY5

No disorders were found for TTTY5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY5 Gene

Publications for TTTY5 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 64
  2. The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men. (PMID: 11687796) Kuroda-Kawaguchi T. … Page D.C. (Nat. Genet. 2001) 3 64

Products for TTTY5 Gene

Sources for TTTY5 Gene

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