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Aliases for TTTY5 Gene

Subcategory (RNA class) for TTTY5 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY5 Gene

  • Testis-Specific Transcript, Y-Linked 5 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 126 2 3
  • Testis-Specific Transcript, Y-Linked 5 2
  • Transcript Y 5 3
  • NCRNA00126 3
  • LINC00126 3
  • TTY5 3

External Ids for TTTY5 Gene

ORGUL Members for TTTY5 Gene

Summaries for TTTY5 Gene

Entrez Gene Summary for TTTY5 Gene

  • There is a single copy of this gene on chromosome Y at the center of the P3 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY5 Gene

TTTY5 (Testis-Specific Transcript, Y-Linked 5 (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

fRNAdb sequence ontologies for TTTY5 Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY5 Gene

Genomics for TTTY5 Gene

Genomic Location for TTTY5 Gene

Start:
22,296,798 bp from pter
End:
22,298,876 bp from pter
Size:
2,079 bases
Orientation:
Minus strand

Genomic View for TTTY5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY5 Gene

Regulatory Elements for TTTY5 Gene

Proteins for TTTY5 Gene

Post-translational modifications for TTTY5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY5 Gene

Domains for TTTY5 Gene

Gene Families for TTTY5 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with TTTY5: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for TTTY5 Gene

Function for TTTY5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY5 Gene

Localization for TTTY5 Gene

No data available for Gene Ontology (GO) - Cellular Components for TTTY5 Gene

Pathways for TTTY5 Gene

SuperPathways for TTTY5 Gene

No Data Available

Interacting Proteins for TTTY5 Gene

Gene Ontology (GO) - Biological Process for TTTY5 Gene

None

No data available for Pathways by source for TTTY5 Gene

Transcripts for TTTY5 Gene

mRNA/cDNA for TTTY5 Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTTY5 Gene

Testis-specific transcript, Y-linked 5 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY5 Gene

No ASD Table

Relevant External Links for TTTY5 Gene

GeneLoc Exon Structure for
TTTY5
ECgene alternative splicing isoforms for
TTTY5

Expression for TTTY5 Gene

mRNA expression in normal human tissues for TTTY5 Gene

SOURCE GeneReport for Unigene cluster for TTTY5 Gene Hs.121389

genes like me logo Genes that share expressions with TTTY5: view

Orthologs for TTTY5 Gene

Evolution for TTTY5 Gene

ENSEMBL:
Gene Tree for TTTY5 (if available)
TreeFam:
Gene Tree for TTTY5 (if available)

No data available for Orthologs for TTTY5 Gene

Paralogs for TTTY5 Gene

No data available for Paralogs for TTTY5 Gene

Variants for TTTY5 Gene

Sequence variations from dbSNP and Humsavar for TTTY5 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs9786683 -- 22,300,705(+) aaaaa(A/T)atata upstream-variant-2KB
rs28542474 -- 22,297,689(+) AGAGG(G/T)CCTGG nc-transcript-variant
rs34861233 -- 22,300,473(-) TGGAG(-/C)CACAG upstream-variant-2KB
rs112061226 -- 22,297,751(+) TCATA(C/T)GACCT nc-transcript-variant
rs113205557 -- 22,297,705(+) AACGG(C/T)CTAAC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY5 Gene

Variant ID Type Subtype PubMed ID
dgv2501e1 CNV Complex 17122850
essv11423 CNV CNV 17122850
essv15983 CNV CNV 17122850
nsv471612 CNV Loss 15918152
nsv515226 CNV Loss 21397061
nsv442821 CNV CNV 18776908

Relevant External Links for TTTY5 Gene

HapMap Linkage Disequilibrium report
TTTY5

Disorders for TTTY5 Gene

No disorders were found for TTTY5 Gene.

No data available for UniProtKB/Swiss-Prot for TTTY5 Gene

Publications for TTTY5 Gene

  1. The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men. (PMID: 11687796) Kuroda-Kawaguchi T. … Page D.C. (Nat. Genet. 2001) 3
  2. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY5
    • Block miRNA regulation of TTTY5 using miScript Target Protectors

    Sources for TTTY5 Gene

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