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Aliases for TTTY4C Gene

Subcategory (RNA class) for TTTY4C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY4C Gene

  • Testis-Specific Transcript, Y-Linked 4C (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 125 2 3
  • Testis-Specific Transcript, Y-Linked 4, Telomeric 3
  • Testis-Specific Transcript, Y-Linked 4C 2
  • NCRNA00125 3
  • LINC00125 3

External Ids for TTTY4C Gene

Previous GeneCards Identifiers for TTTY4C Gene

  • GC0YU900262
  • GC0YM025618
  • GC0YM027209

Summaries for TTTY4C Gene

Entrez Gene Summary for TTTY4C Gene

  • There are three copies of this gene on chromosome Y. This record represents the most telomeric copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY4C Gene

TTTY4C (Testis-Specific Transcript, Y-Linked 4C (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY4C Gene

Genomics for TTTY4C Gene

Genomic Location for TTTY4C Gene

Chromosome:
Y
Start:
25,063,083 bp from pter
End:
25,099,892 bp from pter
Size:
36,810 bases
Orientation:
Minus strand

Genomic View for TTTY4C Gene

Genes around TTTY4C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY4C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY4C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY4C Gene

No data available for Regulatory Elements for TTTY4C Gene

Proteins for TTTY4C Gene

Post-translational modifications for TTTY4C Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY4C Gene

Domains & Families for TTTY4C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY4C Gene

Function for TTTY4C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY4C Gene

Localization for TTTY4C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY4C Gene

Pathways & Interactions for TTTY4C Gene

SuperPathways for TTTY4C Gene

No Data Available

Interacting Proteins for TTTY4C Gene

Gene Ontology (GO) - Biological Process for TTTY4C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY4C Gene

Transcripts for TTTY4C Gene

mRNA/cDNA for TTTY4C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY4C Gene

No ASD Table

Relevant External Links for TTTY4C Gene

GeneLoc Exon Structure for
TTTY4C
ECgene alternative splicing isoforms for
TTTY4C

Expression for TTTY4C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TTTY4C Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY4C Gene:

TTTY4C

SOURCE GeneReport for Unigene cluster for TTTY4C Gene:

Hs.742604
genes like me logo Genes that share expression patterns with TTTY4C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TTTY4C Gene

Orthologs for TTTY4C Gene

Evolution for TTTY4C Gene

ENSEMBL:
Gene Tree for TTTY4C (if available)
TreeFam:
Gene Tree for TTTY4C (if available)

No data available for Orthologs for TTTY4C Gene

Paralogs for TTTY4C Gene

No data available for Paralogs for TTTY4C Gene

Variants for TTTY4C Gene

Sequence variations from dbSNP and Humsavar for TTTY4C Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs111378724 -- 25,088,865(+) CCATG(C/G)TGGTG intron-variant
rs111930078 -- 25,089,154(+) GTATG(G/T)GCCAC intron-variant
rs113175354 -- 25,093,537(+) CTCTC(C/T)CTCTG intron-variant
rs113426258 -- 25,068,216(+) TCTTG(C/T)TTTTG intron-variant
rs158456 -- 25,085,945(-) ttgac(A/G)gcata intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY4C Gene

Variant ID Type Subtype PubMed ID
dgv2560e212 CNV gain 25503493
dgv2568e212 CNV gain 25503493
dgv2569e212 CNV loss 25503493
dgv2573e212 CNV gain 25503493
dgv2575e212 CNV gain 25503493
dgv2576e212 CNV loss 25503493
esv3575148 CNV loss 25503493
esv3575157 CNV loss 25503493
esv3575178 CNV loss 25503493
esv3575179 CNV loss 25503493
esv3577610 CNV gain 25503493
esv3577644 CNV gain 25503493
esv3577645 CNV gain 25503493
esv3577652 CNV gain 25503493
nsv10034 CNV loss 18304495
nsv1152491 CNV duplication 26484159
nsv442825 CNV gain+loss 18776908
nsv442826 CNV gain+loss 18776908
nsv469740 CNV gain+loss 16826518
nsv508824 CNV insertion 20534489
nsv515230 CNV loss 21397061
nsv515231 CNV loss 21397061

Relevant External Links for TTTY4C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY4C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY4C Gene

Disorders for TTTY4C Gene

Relevant External Links for TTTY4C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY4C

No disorders were found for TTTY4C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY4C Gene

Publications for TTTY4C Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 64

Products for TTTY4C Gene

Sources for TTTY4C Gene

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