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Aliases for TTTY4C Gene

Subcategory (RNA class) for TTTY4C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY4C Gene

  • Testis-Specific Transcript, Y-Linked 4C (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 125 2 3
  • Testis-Specific Transcript, Y-Linked 4, Telomeric 3
  • Testis-Specific Transcript, Y-Linked 4C 2
  • NCRNA00125 3
  • LINC00125 3

External Ids for TTTY4C Gene

Previous GeneCards Identifiers for TTTY4C Gene

  • GC0YU900262
  • GC0YM025618
  • GC0YM027209

Summaries for TTTY4C Gene

Entrez Gene Summary for TTTY4C Gene

  • There are three copies of this gene on chromosome Y. This record represents the most telomeric copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY4C Gene

TTTY4C (Testis-Specific Transcript, Y-Linked 4C (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY4C Gene

Genomics for TTTY4C Gene

Genomic Location for TTTY4C Gene

Chromosome:
Y
Start:
25,063,083 bp from pter
End:
25,099,892 bp from pter
Size:
36,810 bases
Orientation:
Minus strand

Genomic View for TTTY4C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY4C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY4C Gene

No data available for Regulatory Elements for TTTY4C Gene

Proteins for TTTY4C Gene

Post-translational modifications for TTTY4C Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY4C Gene

Domains & Families for TTTY4C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY4C Gene

Function for TTTY4C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY4C Gene

Localization for TTTY4C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY4C Gene

Pathways & Interactions for TTTY4C Gene

SuperPathways for TTTY4C Gene

No Data Available

Interacting Proteins for TTTY4C Gene

Gene Ontology (GO) - Biological Process for TTTY4C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY4C Gene

Drugs & Compounds for TTTY4C Gene

No Compound Related Data Available

Transcripts for TTTY4C Gene

mRNA/cDNA for TTTY4C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY4C Gene

No ASD Table

Relevant External Links for TTTY4C Gene

GeneLoc Exon Structure for
TTTY4C
ECgene alternative splicing isoforms for
TTTY4C

Expression for TTTY4C Gene

mRNA expression in normal human tissues for TTTY4C Gene

SOURCE GeneReport for Unigene cluster for TTTY4C Gene Hs.742604

genes like me logo Genes that share expression patterns with TTTY4C: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TTTY4C Gene

Orthologs for TTTY4C Gene

Evolution for TTTY4C Gene

ENSEMBL:
Gene Tree for TTTY4C (if available)
TreeFam:
Gene Tree for TTTY4C (if available)

No data available for Orthologs for TTTY4C Gene

Paralogs for TTTY4C Gene

No data available for Paralogs for TTTY4C Gene

Variants for TTTY4C Gene

Sequence variations from dbSNP and Humsavar for TTTY4C Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs159645 -- 25,094,396(+) tggaa(C/T)aatcc intron-variant
rs159646 -- 25,094,130(-) catgc(A/G)tggcc intron-variant
rs2565735 -- 25,094,185(-) CACTT(G/T)CTTAG intron-variant
rs76222321 -- 25,067,472(+) TGTTT(A/G)CCTAG intron-variant
rs79401574 -- 25,080,229(+) CATGG(A/G)TAAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY4C Gene

Variant ID Type Subtype PubMed ID
dgv2504e1 CNV Complex 17122850
dgv2505e1 CNV Complex 17122850
dgv2506e1 CNV Complex 17122850
nsv10034 CNV Loss 18304495
essv10843 CNV CNV 17122850
nsv508824 CNV Insertion 20534489
dgv2507e1 CNV Complex 17122850
nsv442825 CNV CNV 18776908
dgv2508e1 CNV Complex 17122850
dgv2509e1 CNV Complex 17122850
dgv2510e1 CNV Complex 17122850
nsv515230 CNV Complex 21397061
nsv469740 CNV Complex 16826518
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061
dgv2513e1 CNV Complex 17122850

Relevant External Links for TTTY4C Gene

HapMap Linkage Disequilibrium report
TTTY4C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY4C Gene

Disorders for TTTY4C Gene

Relevant External Links for TTTY4C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY4C
genes like me logo Genes that share disorders with TTTY4C: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY4C Gene

Publications for TTTY4C Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 67

Products for TTTY4C Gene

Sources for TTTY4C Gene

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