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Aliases for TTTY4B Gene

Subcategory (RNA class) for TTTY4B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY4B Gene

  • Testis-Specific Transcript, Y-Linked 4B (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 124 2 3
  • Testis-Specific Transcript, Y-Linked 4, Middle 3
  • Testis-Specific Transcript, Y-Linked 4B 2
  • NCRNA00124 3
  • LINC00124 3

External Ids for TTTY4B Gene

Previous GeneCards Identifiers for TTTY4B Gene

  • GC0YU900261
  • GC0YP025125
  • GC0YP026716

Summaries for TTTY4B Gene

Entrez Gene Summary for TTTY4B Gene

  • There are three copies of this gene on chromosome Y. This record represents the middle copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY4B Gene

TTTY4B (Testis-Specific Transcript, Y-Linked 4B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TTTY4B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY4B Gene

Genomics for TTTY4B Gene

Genomic Location for TTTY4B Gene

Chromosome:
Y
Start:
24,570,202 bp from pter
End:
24,607,025 bp from pter
Size:
36,824 bases
Orientation:
Plus strand

Genomic View for TTTY4B Gene

Genes around TTTY4B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY4B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY4B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY4B Gene

No data available for Regulatory Elements for TTTY4B Gene

Proteins for TTTY4B Gene

Post-translational modifications for TTTY4B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY4B Gene

Domains & Families for TTTY4B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY4B Gene

Function for TTTY4B Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TTTY4B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY4B Gene

Localization for TTTY4B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTTY4B Gene

Pathways & Interactions for TTTY4B Gene

SuperPathways for TTTY4B Gene

No Data Available

Interacting Proteins for TTTY4B Gene

Gene Ontology (GO) - Biological Process for TTTY4B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY4B Gene

Drugs & Compounds for TTTY4B Gene

No Compound Related Data Available

Transcripts for TTTY4B Gene

mRNA/cDNA for TTTY4B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TTTY4B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY4B Gene

No ASD Table

Relevant External Links for TTTY4B Gene

GeneLoc Exon Structure for
TTTY4B
ECgene alternative splicing isoforms for
TTTY4B

Expression for TTTY4B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTTY4B Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY4B Gene:

TTTY4B
genes like me logo Genes that share expression patterns with TTTY4B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY4B Gene

Orthologs for TTTY4B Gene

Evolution for TTTY4B Gene

ENSEMBL:
Gene Tree for TTTY4B (if available)
TreeFam:
Gene Tree for TTTY4B (if available)

No data available for Orthologs for TTTY4B Gene

Paralogs for TTTY4B Gene

No data available for Paralogs for TTTY4B Gene

Variants for TTTY4B Gene

Sequence variations from dbSNP and Humsavar for TTTY4B Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs112332758 -- 24,577,409(+) CCCCA(A/T)ATGAG intron-variant
rs142551731 -- 24,581,154(+) TGGGG(G/T)GGGGG intron-variant
rs158459 -- 24,589,867(+) ACCCA(C/T)GATTC intron-variant
rs201300941 -- 24,575,709(+) CCCAA(C/G)CAGTG intron-variant
rs2557786 -- 24,578,069(+) tgggt(C/T)cgcac intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY4B Gene

Variant ID Type Subtype PubMed ID
dgv2560e212 CNV gain 25503493
dgv2568e212 CNV gain 25503493
dgv2569e212 CNV loss 25503493
dgv2573e212 CNV gain 25503493
dgv2575e212 CNV gain 25503493
dgv2576e212 CNV loss 25503493
esv3575148 CNV loss 25503493
esv3575157 CNV loss 25503493
esv3575178 CNV loss 25503493
esv3575179 CNV loss 25503493
esv3577610 CNV gain 25503493
esv3577644 CNV gain 25503493
esv3577645 CNV gain 25503493
esv3577652 CNV gain 25503493
nsv10034 CNV loss 18304495
nsv1152491 CNV duplication 26484159
nsv442825 CNV gain+loss 18776908
nsv442826 CNV gain+loss 18776908
nsv469740 CNV gain+loss 16826518
nsv508824 CNV insertion 20534489
nsv515230 CNV loss 21397061
nsv515231 CNV loss 21397061

Relevant External Links for TTTY4B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY4B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY4B Gene

Disorders for TTTY4B Gene

Relevant External Links for TTTY4B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY4B

No disorders were found for TTTY4B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY4B Gene

Publications for TTTY4B Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H … Page DC (Nature 2003) 3 60

Products for TTTY4B Gene

Sources for TTTY4B Gene

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