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Aliases for TTTY4B Gene

Subcategory (RNA class) for TTTY4B Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY4B Gene

  • Testis-Specific Transcript, Y-Linked 4B (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 124 2 3
  • Testis-Specific Transcript, Y-Linked 4, Middle 3
  • Testis-Specific Transcript, Y-Linked 4B 2
  • NCRNA00124 3
  • LINC00124 3

External Ids for TTTY4B Gene

ORGUL Members for TTTY4B Gene

Summaries for TTTY4B Gene

Entrez Gene Summary for TTTY4B Gene

  • There are three copies of this gene on chromosome Y. This record represents the middle copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY4B Gene

TTTY4B (Testis-Specific Transcript, Y-Linked 4B (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY4B Gene

Genomics for TTTY4B Gene

Genomic Location for TTTY4B Gene

Start:
24,570,202 bp from pter
End:
24,607,025 bp from pter
Size:
36,824 bases
Orientation:
Plus strand

Genomic View for TTTY4B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY4B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY4B Gene

No data available for Regulatory Elements for TTTY4B Gene

Proteins for TTTY4B Gene

Post-translational modifications for TTTY4B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY4B Gene

Domains for TTTY4B Gene

Gene Families for TTTY4B Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with TTTY4B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for TTTY4B Gene

Function for TTTY4B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY4B Gene

Localization for TTTY4B Gene

No data available for Gene Ontology (GO) - Cellular Components for TTTY4B Gene

Pathways for TTTY4B Gene

SuperPathways for TTTY4B Gene

No Data Available

Interacting Proteins for TTTY4B Gene

Gene Ontology (GO) - Biological Process for TTTY4B Gene

None

No data available for Pathways by source for TTTY4B Gene

Transcripts for TTTY4B Gene

mRNA/cDNA for TTTY4B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY4B Gene

No ASD Table

Relevant External Links for TTTY4B Gene

GeneLoc Exon Structure for
TTTY4B
ECgene alternative splicing isoforms for
TTTY4B

Expression for TTTY4B Gene

mRNA expression in normal human tissues for TTTY4B Gene

genes like me logo Genes that share expressions with TTTY4B: view

Orthologs for TTTY4B Gene

Evolution for TTTY4B Gene

ENSEMBL:
Gene Tree for TTTY4B (if available)
TreeFam:
Gene Tree for TTTY4B (if available)

No data available for Orthologs for TTTY4B Gene

Paralogs for TTTY4B Gene

No data available for Paralogs for TTTY4B Gene

Variants for TTTY4B Gene

Sequence variations from dbSNP and Humsavar for TTTY4B Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs2557786 -- 24,578,069(+) tgggt(C/T)cgcac intron-variant
rs2557787 -- 24,579,067(+) TGAGA(A/C)ATTAC intron-variant
rs2559406 -- 24,570,624(+) AATGA(A/T)TGTAA intron-variant
rs2559407 -- 24,576,188(+) AGTAA(A/G)TGTTT intron-variant
rs112332758 -- 24,577,409(+) CCCCA(A/T)ATGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY4B Gene

Variant ID Type Subtype PubMed ID
dgv2504e1 CNV Complex 17122850
dgv2505e1 CNV Complex 17122850
dgv2506e1 CNV Complex 17122850
nsv10034 CNV Loss 18304495
essv10843 CNV CNV 17122850
nsv508824 CNV Insertion 20534489
dgv2507e1 CNV Complex 17122850
nsv442825 CNV CNV 18776908
dgv2508e1 CNV Complex 17122850
dgv2509e1 CNV Complex 17122850
dgv2510e1 CNV Complex 17122850
nsv515230 CNV Complex 21397061
nsv469740 CNV Complex 16826518
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061
dgv2513e1 CNV Complex 17122850

Relevant External Links for TTTY4B Gene

HapMap Linkage Disequilibrium report
TTTY4B

Disorders for TTTY4B Gene

No disorders were found for TTTY4B Gene.

No data available for UniProtKB/Swiss-Prot for TTTY4B Gene

Publications for TTTY4B Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY4B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY4B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY4B
    • Block miRNA regulation of TTTY4B using miScript Target Protectors

    Sources for TTTY4B Gene

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