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Aliases for TTTY4 Gene

Subcategory (RNA class) for TTTY4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY4 Gene

  • Testis-Specific Transcript, Y-Linked 4 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 123 2 3
  • Testis-Specific Transcript, Y-Linked 4 2
  • NCRNA00123 3
  • LINC00123 3
  • TTTY4A 3
  • TTY4 3

External Ids for TTTY4 Gene

Previous GeneCards Identifiers for TTTY4 Gene

  • GC0YU990042
  • GC0YP025561
  • GC0YP023420
  • GC0YP023491
  • GC0YP025082
  • GC0YP017892

Summaries for TTTY4 Gene

Entrez Gene Summary for TTTY4 Gene

  • There are three copies of this gene on chromosome Y. This record represents the most centromeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY4 Gene

TTTY4 (Testis-Specific Transcript, Y-Linked 4 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY4 Gene

Genomics for TTTY4 Gene

Genomic Location for TTTY4 Gene

Chromosome:
Y
Start:
22,936,455 bp from pter
End:
22,973,284 bp from pter
Size:
36,830 bases
Orientation:
Plus strand

Genomic View for TTTY4 Gene

Genes around TTTY4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY4 Gene

No data available for Regulatory Elements for TTTY4 Gene

Proteins for TTTY4 Gene

Post-translational modifications for TTTY4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY4 Gene

Domains & Families for TTTY4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY4 Gene

Function for TTTY4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY4 Gene

Localization for TTTY4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY4 Gene

Pathways & Interactions for TTTY4 Gene

SuperPathways for TTTY4 Gene

No Data Available

Interacting Proteins for TTTY4 Gene

Gene Ontology (GO) - Biological Process for TTTY4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY4 Gene

Drugs & Compounds for TTTY4 Gene

No Compound Related Data Available

Transcripts for TTTY4 Gene

mRNA/cDNA for TTTY4 Gene

(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTTY4 Gene

Testis-specific transcript, Y-linked 4 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY4 Gene

No ASD Table

Relevant External Links for TTTY4 Gene

GeneLoc Exon Structure for
TTTY4
ECgene alternative splicing isoforms for
TTTY4

Expression for TTTY4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTTY4 Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY4 Gene:

TTTY4

SOURCE GeneReport for Unigene cluster for TTTY4 Gene:

Hs.679521
genes like me logo Genes that share expression patterns with TTTY4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY4 Gene

Orthologs for TTTY4 Gene

Evolution for TTTY4 Gene

ENSEMBL:
Gene Tree for TTTY4 (if available)
TreeFam:
Gene Tree for TTTY4 (if available)

No data available for Orthologs for TTTY4 Gene

Paralogs for TTTY4 Gene

No data available for Paralogs for TTTY4 Gene

Variants for TTTY4 Gene

Sequence variations from dbSNP and Humsavar for TTTY4 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs144230927 -- 22,960,290(+) TTTTT(C/T)TTTGA intron-variant
rs158457 -- 22,950,708(+) caatt(A/T)cccag intron-variant
rs158462 -- 22,968,661(+) actgt(C/G)tcgta intron-variant
rs158463 -- 22,968,868(+) ttacc(C/T)tgata intron-variant
rs159647 -- 22,942,293(+) atgcc(A/G)cacaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY4 Gene

Variant ID Type Subtype PubMed ID
dgv2560e212 CNV gain 25503493
dgv2568e212 CNV gain 25503493
dgv2569e212 CNV loss 25503493
dgv2573e212 CNV gain 25503493
dgv2575e212 CNV gain 25503493
dgv2576e212 CNV loss 25503493
esv3575148 CNV loss 25503493
esv3575157 CNV loss 25503493
esv3575178 CNV loss 25503493
esv3575179 CNV loss 25503493
esv3577610 CNV gain 25503493
esv3577644 CNV gain 25503493
esv3577645 CNV gain 25503493
esv3577652 CNV gain 25503493
nsv10034 CNV loss 18304495
nsv1152491 CNV duplication 26484159
nsv442825 CNV gain+loss 18776908
nsv442826 CNV gain+loss 18776908
nsv469740 CNV gain+loss 16826518
nsv508824 CNV insertion 20534489
nsv515230 CNV loss 21397061
nsv515231 CNV loss 21397061

Relevant External Links for TTTY4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY4 Gene

Disorders for TTTY4 Gene

Relevant External Links for TTTY4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY4

No disorders were found for TTTY4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY4 Gene

Publications for TTTY4 Gene

  1. Single-nucleotide polymorphisms in the TSPYL-4 and NT5DC1 genes are associated with susceptibility to chronic obstructive pulmonary disease. (PMID: 22736055) Guo Y. … Wan H. (Mol Med Rep 2012) 3 64
  2. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 64

Products for TTTY4 Gene

Sources for TTTY4 Gene

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