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Aliases for TTTY4 Gene

Subcategory (RNA class) for TTTY4 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY4 Gene

  • Testis-Specific Transcript, Y-Linked 4 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 123 2 3
  • Testis-Specific Transcript, Y-Linked 4 2
  • NCRNA00123 3
  • LINC00123 3
  • TTTY4A 3
  • TTY4 3

External Ids for TTTY4 Gene

ORGUL Members for TTTY4 Gene

Previous GeneCards Identifiers for TTTY4 Gene

  • GC0YU990042
  • GC0YP025561
  • GC0YP023420
  • GC0YP023491
  • GC0YP025082
  • GC0YP017892

Summaries for TTTY4 Gene

Entrez Gene Summary for TTTY4 Gene

  • There are three copies of this gene on chromosome Y. This record represents the most centromeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY4 Gene

TTTY4 (Testis-Specific Transcript, Y-Linked 4 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY4 Gene

Genomics for TTTY4 Gene

Genomic Location for TTTY4 Gene

Start:
22,936,455 bp from pter
End:
22,973,284 bp from pter
Size:
36,830 bases
Orientation:
Plus strand

Genomic View for TTTY4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY4 Gene

No data available for Regulatory Elements for TTTY4 Gene

Proteins for TTTY4 Gene

Post-translational modifications for TTTY4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY4 Gene

Domains for TTTY4 Gene

Gene Families for TTTY4 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTTY4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY4 Gene

Function for TTTY4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY4 Gene

Localization for TTTY4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY4 Gene

Pathways for TTTY4 Gene

SuperPathways for TTTY4 Gene

No Data Available

Interacting Proteins for TTTY4 Gene

Gene Ontology (GO) - Biological Process for TTTY4 Gene

None

No data available for Pathways by source for TTTY4 Gene

Transcripts for TTTY4 Gene

mRNA/cDNA for TTTY4 Gene

(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTTY4 Gene

Testis-specific transcript, Y-linked 4 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY4 Gene

No ASD Table

Relevant External Links for TTTY4 Gene

GeneLoc Exon Structure for
TTTY4
ECgene alternative splicing isoforms for
TTTY4

Expression for TTTY4 Gene

mRNA expression in normal human tissues for TTTY4 Gene

SOURCE GeneReport for Unigene cluster for TTTY4 Gene Hs.679521

genes like me logo Genes that share expressions with TTTY4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TTTY4 Gene

Orthologs for TTTY4 Gene

Evolution for TTTY4 Gene

ENSEMBL:
Gene Tree for TTTY4 (if available)
TreeFam:
Gene Tree for TTTY4 (if available)

No data available for Orthologs for TTTY4 Gene

Paralogs for TTTY4 Gene

No data available for Paralogs for TTTY4 Gene

Variants for TTTY4 Gene

Sequence variations from dbSNP and Humsavar for TTTY4 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs158457 -- 22,950,708(+) caatt(A/T)cccag intron-variant
rs158462 -- 22,968,661(+) actgt(C/G)tcgta intron-variant
rs159647 -- 22,942,293(+) atgcc(A/G)cacaa intron-variant
rs159651 -- 22,944,010(+) cttgg(C/T)gaact intron-variant
rs159653 -- 22,953,795(+) taact(A/G)tttgt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY4 Gene

Variant ID Type Subtype PubMed ID
dgv2504e1 CNV Complex 17122850
dgv2505e1 CNV Complex 17122850
dgv2506e1 CNV Complex 17122850
nsv10034 CNV Loss 18304495
essv10843 CNV CNV 17122850
nsv508824 CNV Insertion 20534489
dgv2507e1 CNV Complex 17122850
nsv442825 CNV CNV 18776908
dgv2508e1 CNV Complex 17122850
dgv2509e1 CNV Complex 17122850
dgv2510e1 CNV Complex 17122850
nsv515230 CNV Complex 21397061
nsv469740 CNV Complex 16826518
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061
dgv2513e1 CNV Complex 17122850

Relevant External Links for TTTY4 Gene

HapMap Linkage Disequilibrium report
TTTY4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTTY4 Gene

Disorders for TTTY4 Gene

No disorders were found for TTTY4 Gene.

No data available for UniProtKB/Swiss-Prot for TTTY4 Gene

Publications for TTTY4 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3
  2. Single-nucleotide polymorphisms in the TSPYL-4 and NT5DC1 genes are associated with susceptibility to chronic obstructive pulmonary disease. (PMID: 22736055) Guo Y. … Wan H. (Mol Med Rep 2012) 3

Products for TTTY4 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY4
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY4
    • Block miRNA regulation of TTTY4 using miScript Target Protectors

    Sources for TTTY4 Gene

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