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Aliases for TTTY3B Gene

Subcategory (RNA class) for TTTY3B Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for TTTY3B Gene

  • Testis-Specific Transcript, Y-Linked 3B (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 122 2 3
  • Testis-Specific Transcript, Y-Linked 3, Centromeric 3
  • Testis-Specific Transcript, Y-Linked 3B 2
  • LNCRNA00122 3
  • NCRNA00122 3

External Ids for TTTY3B Gene

ORGUL Members for TTTY3B Gene

Summaries for TTTY3B Gene

Entrez Gene Summary for TTTY3B Gene

  • There are two copies of this gene within the P1 palindrome on chromosome Y. This record represents the more centromeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY3B Gene

TTTY3B (Testis-Specific Transcript, Y-Linked 3B (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

fRNAdb sequence ontologies for TTTY3B Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY3B Gene

Genomics for TTTY3B Gene

Genomic Location for TTTY3B Gene

Start:
23,936,727 bp from pter
End:
23,941,622 bp from pter
Size:
4,896 bases
Orientation:
Minus strand

Genomic View for TTTY3B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY3B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY3B Gene

Regulatory Elements for TTTY3B Gene

Proteins for TTTY3B Gene

Post-translational modifications for TTTY3B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY3B Gene

Domains for TTTY3B Gene

Gene Families for TTTY3B Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with TTTY3B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for TTTY3B Gene

Function for TTTY3B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY3B Gene

Localization for TTTY3B Gene

No data available for Gene Ontology (GO) - Cellular Components for TTTY3B Gene

Pathways for TTTY3B Gene

SuperPathways for TTTY3B Gene

No Data Available

Interacting Proteins for TTTY3B Gene

Gene Ontology (GO) - Biological Process for TTTY3B Gene

None

No data available for Pathways by source for TTTY3B Gene

Transcripts for TTTY3B Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY3B Gene

No ASD Table

Relevant External Links for TTTY3B Gene

GeneLoc Exon Structure for
TTTY3B
ECgene alternative splicing isoforms for
TTTY3B

No data available for mRNA/cDNA for TTTY3B Gene

Expression for TTTY3B Gene

SOURCE GeneReport for Unigene cluster for TTTY3B Gene Hs.511777

No Expression Related Data Available

Orthologs for TTTY3B Gene

No data available for Orthologs and Evolution for TTTY3B Gene

Paralogs for TTTY3B Gene

No data available for Paralogs for TTTY3B Gene

Variants for TTTY3B Gene

Sequence variations from dbSNP and Humsavar for TTTY3B Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs112155979 -- 23,943,605(+) CAGGA(A/G)AATGG upstream-variant-2KB
rs112170550 -- 23,943,445(+) AATCC(C/T)AGCAC upstream-variant-2KB
rs113901500 -- 23,942,789(+) ACATG(A/C)CTGTA upstream-variant-2KB
rs376301905 -- 23,938,714(+) GATCT(-/TTA)TTATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY3B Gene

Variant ID Type Subtype PubMed ID
essv10843 CNV CNV 17122850
nsv442824 CNV CNV 18776908
dgv2510e1 CNV Complex 17122850
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061

Relevant External Links for TTTY3B Gene

HapMap Linkage Disequilibrium report
TTTY3B

Disorders for TTTY3B Gene

No disorders were found for TTTY3B Gene.

No data available for UniProtKB/Swiss-Prot for TTTY3B Gene

Publications for TTTY3B Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY3B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY3B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY3B
    • Block miRNA regulation of TTTY3B using miScript Target Protectors

    Sources for TTTY3B Gene

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