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Aliases for TTTY3B Gene

Subcategory (RNA class) for TTTY3B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY3B Gene

  • Testis-Specific Transcript, Y-Linked 3B (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 122 2 3
  • Testis-Specific Transcript, Y-Linked 3, Centromeric 3
  • Testis-Specific Transcript, Y-Linked 3B 2
  • LNCRNA00122 3
  • NCRNA00122 3

External Ids for TTTY3B Gene

Previous GeneCards Identifiers for TTTY3B Gene

  • GC0YU900260
  • GC0YM024492
  • GC0YM026082

Summaries for TTTY3B Gene

Entrez Gene Summary for TTTY3B Gene

  • There are two copies of this gene within the P1 palindrome on chromosome Y. This record represents the more centromeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY3B Gene

TTTY3B (Testis-Specific Transcript, Y-Linked 3B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY3B Gene

Genomics for TTTY3B Gene

Regulatory Elements for TTTY3B Gene

Genomic Location for TTTY3B Gene

Chromosome:
Y
Start:
23,936,727 bp from pter
End:
23,941,622 bp from pter
Size:
4,896 bases
Orientation:
Minus strand

Genomic View for TTTY3B Gene

Genes around TTTY3B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY3B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY3B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY3B Gene

Proteins for TTTY3B Gene

Post-translational modifications for TTTY3B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY3B Gene

Domains & Families for TTTY3B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY3B Gene

Function for TTTY3B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY3B Gene

Localization for TTTY3B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY3B Gene

Pathways & Interactions for TTTY3B Gene

SuperPathways for TTTY3B Gene

No Data Available

Interacting Proteins for TTTY3B Gene

Gene Ontology (GO) - Biological Process for TTTY3B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY3B Gene

Drugs & Compounds for TTTY3B Gene

No Compound Related Data Available

Transcripts for TTTY3B Gene

mRNA/cDNA for TTTY3B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY3B Gene

No ASD Table

Relevant External Links for TTTY3B Gene

GeneLoc Exon Structure for
TTTY3B
ECgene alternative splicing isoforms for
TTTY3B

Expression for TTTY3B Gene

SOURCE GeneReport for Unigene cluster for TTTY3B Gene Hs.511777

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TTTY3B Gene

Orthologs for TTTY3B Gene

Evolution for TTTY3B Gene

ENSEMBL:
Gene Tree for TTTY3B (if available)
TreeFam:
Gene Tree for TTTY3B (if available)

No data available for Orthologs for TTTY3B Gene

Paralogs for TTTY3B Gene

No data available for Paralogs for TTTY3B Gene

Variants for TTTY3B Gene

Sequence variations from dbSNP and Humsavar for TTTY3B Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs113901500 -- 23,942,789(+) ACATG(A/C)CTGTA upstream-variant-2KB
rs376301905 -- 23,938,714(+) GATCT(-/TTA)TTATT intron-variant
rs112155979 -- 23,943,605(+) CAGGA(A/G)AATGG upstream-variant-2KB
rs112170550 -- 23,943,445(+) AATCC(C/T)AGCAC upstream-variant-2KB
rs769703510 -- 23,942,863(+) GAGCC(-/A)AAAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY3B Gene

Variant ID Type Subtype PubMed ID
essv10843 CNV CNV 17122850
nsv442824 CNV CNV 18776908
dgv2510e1 CNV Complex 17122850
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061

Relevant External Links for TTTY3B Gene

HapMap Linkage Disequilibrium report
TTTY3B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY3B Gene

Disorders for TTTY3B Gene

Relevant External Links for TTTY3B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY3B

No disorders were found for TTTY3B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY3B Gene

Publications for TTTY3B Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 67

Products for TTTY3B Gene

Sources for TTTY3B Gene

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