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Aliases for TTTY3 Gene

Subcategory (RNA class) for TTTY3 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY3 Gene

  • Testis-Specific Transcript, Y-Linked 3 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 121 2 3
  • Testis-Specific Transcript, Y-Linked 3 2
  • NCRNA00121 3
  • LINC00121 3
  • TTTY3A 3
  • TTY3 3

External Ids for TTTY3 Gene

ORGUL Members for TTTY3 Gene

Previous GeneCards Identifiers for TTTY3 Gene

  • GC0YU990041
  • GC0YM024928
  • GC0YP026212
  • GC0YP026284
  • GC0YP027874

Summaries for TTTY3 Gene

Entrez Gene Summary for TTTY3 Gene

  • There are two copies of this gene within the P1 palindrome on chromosome Y. This record represents the more telomeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY3 Gene

TTTY3 (Testis-Specific Transcript, Y-Linked 3 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for TTTY3 Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY3 Gene

Genomics for TTTY3 Gene

Regulatory Elements for TTTY3 Gene

Genomic Location for TTTY3 Gene

Start:
25,728,490 bp from pter
End:
25,733,388 bp from pter
Size:
4,899 bases
Orientation:
Plus strand

Genomic View for TTTY3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY3 Gene

Proteins for TTTY3 Gene

Post-translational modifications for TTTY3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY3 Gene

Domains for TTTY3 Gene

Gene Families for TTTY3 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTTY3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY3 Gene

Function for TTTY3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY3 Gene

Localization for TTTY3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY3 Gene

Pathways for TTTY3 Gene

SuperPathways for TTTY3 Gene

No Data Available

Interacting Proteins for TTTY3 Gene

Gene Ontology (GO) - Biological Process for TTTY3 Gene

None

No data available for Pathways by source for TTTY3 Gene

Transcripts for TTTY3 Gene

mRNA/cDNA for TTTY3 Gene

(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY3

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY3 Gene

No ASD Table

Relevant External Links for TTTY3 Gene

GeneLoc Exon Structure for
TTTY3
ECgene alternative splicing isoforms for
TTTY3

Expression for TTTY3 Gene

mRNA expression in normal human tissues for TTTY3 Gene

genes like me logo Genes that share expressions with TTTY3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for TTTY3 Gene

Orthologs for TTTY3 Gene

Evolution for TTTY3 Gene

ENSEMBL:
Gene Tree for TTTY3 (if available)
TreeFam:
Gene Tree for TTTY3 (if available)

No data available for Orthologs for TTTY3 Gene

Paralogs for TTTY3 Gene

No data available for Paralogs for TTTY3 Gene

Variants for TTTY3 Gene

Sequence variations from dbSNP and Humsavar for TTTY3 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs698435 -- 25,727,596(+) CTATT(G/T)CTCAG upstream-variant-2KB
rs111450766 -- 25,727,424(+) CACCC(C/T)CCTCA upstream-variant-2KB
rs111519372 -- 25,727,157(+) CTCTC(C/T)TCTTT upstream-variant-2KB
rs111634315 -- 25,726,528(+) CCAAG(G/T)AGCTG upstream-variant-2KB
rs112426465 -- 25,727,059(+) TCTCT(C/T)TTTCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY3 Gene

Variant ID Type Subtype PubMed ID
essv10843 CNV CNV 17122850
nsv442824 CNV CNV 18776908
dgv2510e1 CNV Complex 17122850
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061

Relevant External Links for TTTY3 Gene

HapMap Linkage Disequilibrium report
TTTY3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTTY3 Gene

Disorders for TTTY3 Gene

No disorders were found for TTTY3 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for TTTY3 Gene

Publications for TTTY3 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY3 Gene

Sources for TTTY3 Gene

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