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Aliases for TTTY3 Gene

Subcategory (RNA class) for TTTY3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY3 Gene

  • Testis-Specific Transcript, Y-Linked 3 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 121 2 3
  • Testis-Specific Transcript, Y-Linked 3 2
  • NCRNA00121 3
  • LINC00121 3
  • TTTY3A 3
  • TTY3 3

External Ids for TTTY3 Gene

Previous GeneCards Identifiers for TTTY3 Gene

  • GC0YU990041
  • GC0YM024928
  • GC0YP026212
  • GC0YP026284
  • GC0YP027874

Summaries for TTTY3 Gene

Entrez Gene Summary for TTTY3 Gene

  • There are two copies of this gene within the P1 palindrome on chromosome Y. This record represents the more telomeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY3 Gene

TTTY3 (Testis-Specific Transcript, Y-Linked 3 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY3 Gene

Genomics for TTTY3 Gene

Genomic Location for TTTY3 Gene

Chromosome:
Y
Start:
25,728,490 bp from pter
End:
25,733,388 bp from pter
Size:
4,899 bases
Orientation:
Plus strand

Genomic View for TTTY3 Gene

Genes around TTTY3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY3 Gene

Proteins for TTTY3 Gene

Post-translational modifications for TTTY3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY3 Gene

Domains & Families for TTTY3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY3 Gene

Function for TTTY3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY3 Gene

Localization for TTTY3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY3 Gene

Pathways & Interactions for TTTY3 Gene

SuperPathways for TTTY3 Gene

No Data Available

Interacting Proteins for TTTY3 Gene

Gene Ontology (GO) - Biological Process for TTTY3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY3 Gene

Transcripts for TTTY3 Gene

mRNA/cDNA for TTTY3 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY3 Gene

No ASD Table

Relevant External Links for TTTY3 Gene

GeneLoc Exon Structure for
TTTY3
ECgene alternative splicing isoforms for
TTTY3

Expression for TTTY3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TTTY3 Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY3 Gene:

TTTY3
genes like me logo Genes that share expression patterns with TTTY3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TTTY3 Gene

Orthologs for TTTY3 Gene

Evolution for TTTY3 Gene

ENSEMBL:
Gene Tree for TTTY3 (if available)
TreeFam:
Gene Tree for TTTY3 (if available)

No data available for Orthologs for TTTY3 Gene

Paralogs for TTTY3 Gene

No data available for Paralogs for TTTY3 Gene

Variants for TTTY3 Gene

Sequence variations from dbSNP and Humsavar for TTTY3 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs111450766 -- 25,727,424(+) CACCC(C/T)CCTCA upstream-variant-2KB
rs111519372 -- 25,727,157(+) CTCTC(C/T)TCTTT upstream-variant-2KB
rs111634315 -- 25,726,528(+) CCAAG(G/T)AGCTG upstream-variant-2KB
rs112426465 -- 25,727,059(+) TCTCT(C/T)TTTCT upstream-variant-2KB
rs112763454 -- 25,726,802(+) TGAGA(C/T)TTCAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY3 Gene

Variant ID Type Subtype PubMed ID
dgv2564e212 CNV gain 25503493
dgv2566e212 CNV gain 25503493
dgv2567e212 CNV loss 25503493
dgv2577e212 CNV gain 25503493
esv3575148 CNV loss 25503493
esv3575179 CNV loss 25503493
esv3575192 CNV loss 25503493
esv3577652 CNV gain 25503493
nsv442824 CNV gain+loss 18776908
nsv442826 CNV gain+loss 18776908
nsv515231 CNV loss 21397061

Relevant External Links for TTTY3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY3 Gene

Disorders for TTTY3 Gene

Relevant External Links for TTTY3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY3

No disorders were found for TTTY3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY3 Gene

Publications for TTTY3 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 64

Products for TTTY3 Gene

Sources for TTTY3 Gene

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