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Aliases for TTTY2 Gene

Subcategory (RNA class) for TTTY2 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY2 Gene

  • Testis-Specific Transcript, Y-Linked 2 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 109 2 3
  • Testis-Specific Transcript, Y-Linked 2 2
  • Testis-Specific Testis Transcript Y 2 3
  • NCRNA00109 3
  • LINC00109 3
  • TTY2 3

External Ids for TTTY2 Gene

ORGUL Members for TTTY2 Gene

Summaries for TTTY2 Gene

GeneCards Summary for TTTY2 Gene

TTTY2 (Testis-Specific Transcript, Y-Linked 2 (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

fRNAdb sequence ontologies for TTTY2 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY2 Gene

Genomics for TTTY2 Gene

Genomic Location for TTTY2 Gene

Start:
9,736,286 bp from pter
End:
9,758,476 bp from pter
Size:
22,191 bases
Orientation:
Plus strand

Genomic View for TTTY2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY2 Gene

No data available for Regulatory Elements for TTTY2 Gene

Proteins for TTTY2 Gene

Post-translational modifications for TTTY2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY2 Gene

Domains for TTTY2 Gene

Gene Families for TTTY2 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with TTTY2: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for TTTY2 Gene

Function for TTTY2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY2 Gene

Localization for TTTY2 Gene

No data available for Gene Ontology (GO) - Cellular Components for TTTY2 Gene

Pathways for TTTY2 Gene

SuperPathways for TTTY2 Gene

No Data Available

Interacting Proteins for TTTY2 Gene

Gene Ontology (GO) - Biological Process for TTTY2 Gene

None

No data available for Pathways by source for TTTY2 Gene

Transcripts for TTTY2 Gene

mRNA/cDNA for TTTY2 Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTTY2 Gene

Testis-specific transcript, Y-linked 2 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY2 Gene

No ASD Table

Relevant External Links for TTTY2 Gene

GeneLoc Exon Structure for
TTTY2
ECgene alternative splicing isoforms for
TTTY2

Expression for TTTY2 Gene

mRNA expression in normal human tissues for TTTY2 Gene

mRNA differential expression in normal tissues according to GTEx for TTTY2 Gene

This gene is overexpressed in Testis (30.1), Colon - Transverse (6.0), Skin - Sun Exposed (Lower leg) (5.9), Small Intestine - Terminal Ileum (5.6), and Minor Salivary Gland (5.4).

SOURCE GeneReport for Unigene cluster for TTTY2 Gene Hs.158345

genes like me logo Genes that share expressions with TTTY2: view

Orthologs for TTTY2 Gene

Evolution for TTTY2 Gene

ENSEMBL:
Gene Tree for TTTY2 (if available)
TreeFam:
Gene Tree for TTTY2 (if available)

No data available for Orthologs for TTTY2 Gene

Paralogs for TTTY2 Gene

No data available for Paralogs for TTTY2 Gene

Variants for TTTY2 Gene

Sequence variations from dbSNP and Humsavar for TTTY2 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs2594567 -- 9,743,077(+) AATCC(C/T)TAATA intron-variant
rs3865837 -- 9,740,005(-) CAGAA(A/G)TGTTT intron-variant
rs111321547 -- 9,743,569(+) CTAGA(A/G)AGAAG intron-variant
rs111584356 -- 9,747,562(+) ACTGA(C/G)AGCTG intron-variant
rs112053245 -- 9,751,738(+) ACTCC(A/G)GCACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY2 Gene

Variant ID Type Subtype PubMed ID
dgv2496e1 CNV Complex 17122850
nsv7473 OTHER Inversion 18451855
nsv508820 CNV Insertion 20534489

Relevant External Links for TTTY2 Gene

HapMap Linkage Disequilibrium report
TTTY2

Disorders for TTTY2 Gene

No disorders were found for TTTY2 Gene.

No data available for UniProtKB/Swiss-Prot for TTTY2 Gene

Publications for TTTY2 Gene

  1. Functional coherence of the human Y chromosome. (PMID: 9381176) Lahn B.T. … Page D.C. (Science 1997) 3
  2. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY2 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY2
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY2
    • Block miRNA regulation of TTTY2 using miScript Target Protectors

    Sources for TTTY2 Gene

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