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Aliasesfor TTTY19 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section GeneCards Plus Subcategory (RNA class): lncRNAQuality score for this RNA gene is 5 Aliases Testis-Specific Transcript, Y-Linked 19 (Non-Protein Coding) 1 2 Non-Protein Coding RNA 1441 Testis-Specific Transcript, Y-Linked 191 NCRNA001442
External Ids: HGNC: 18843 1 Entrez Gene: 252952 2 Ensembl: ENSG00000232419 7 Export aliases for TTTY19 gene to outside databases Previous GC identifers: GC0YU990060 GC0YP006138
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Summariesfor TTTY19 gene (According to Entrez Gene ,
GeneCards ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section GeneCards Plus GeneCards Summary for TTTY19 Gene: TTTY19 (testis-specific transcript, Y-linked 19 (non-protein coding)) is an RNA gene, and is affiliated with the lncRNA class. fRNAdb sequence ontology for TTTY19: ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.View fRNAdb secondary structures for TTTY19
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Genomic Viewsfor TTTY19 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 75) ,
Regulatory elements and Epigenetics data according to
QIAGEN , and/or
SwitchGear Genomics )About This Section GeneCards Plus RefSeq DNA sequence at NCBI GenBank: NC_000024.9 NT_011896.10 Regulatory elements: Search for regulatory transcription factor binding sites for TTTY19 Other transcription factors Search Chromatin IP Primers for TTTY19 Epigenetics: DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TTTY19
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: Yp11.2 Ensembl cytogenetic band: Yp11.2 HGNC cytogenetic band: Yp11.2 TTTY19 Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome Y GeneLoc Exon Structure
GeneLoc location for GC0YP008615: view genomic region
(about GC identifiers )
Start: 8,572,513 bp from pter End:
8,573,324 bp from pter
Size: 812 bases Orientation:
plus strand
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Proteinsfor TTTY19 gene
(According to
1 UniProtKB ,
HORDE ,
2 neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
Antibodies by
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam ,
Cloud-Clone Corp ,
antibodies-online ,
and/or others.)
About This Section GeneCards Plus UniProtKB: --
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Domains /for TTTY19 gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section GeneCards Plus HGNC Gene Families: LNCRNA: Long non-coding RNAs
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Functionfor TTTY19 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
genOway ,
QIAGEN
and/or HOMER ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
Gene Editing from DNA2.0 ,
Clones from OriGene ,
GenScript ,
Sino Biological ,
DNA2.0 ,
Vector BioLabs
and/or Addgene ,
Cell Lines from GenScript ,
ESI BIO ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Flow cytometry from eBioscience ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
Animal Models: Cell Line GenScript Custom overexpressing Cell Line Services for TTTY19 Browse ESI BIO Cell Lines and PureStem Progenitors for TTTY19 In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TTTY19
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Localizationfor TTTY19 gene
(According to UniProtKB , COMPARTMENTS Subcellular localization database ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
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Pathways & Interactionsfor TTTY19 gene
(SuperPaths according to PathCards ,
Pathways according to
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
QIAGEN ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene) .
About This Section GeneCards Plus
Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TTTY19 Interactions: Search GeneGlobe Interaction Network for TTTY19
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Drugs & Compoundsfor TTTY19 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience ,
ApexBio ,
HMDB ,
BitterDB , and/or
Novoseek ,
Ligands according to IUPHAR ,
and Drugs according to DrugBank ,
Enzo Life Sciences , and/or
PharmGKB )
About This Section GeneCards Plus
Browse compounds at ApexBio Browse Tocris compounds for TTTY19
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Transcriptsfor TTTY19 gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
OriGene ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
and/or Addgene ,
Primers from
OriGene , and/or
QIAGEN ,
Flow cytometry from eBioscience
)About This Section GeneCards Plus 1 fRNAdb Secondary structure: Unigene Cluster for TTTY19:
Testis-specific transcript, Y-linked 19 (non-protein coding) Hs.522853 Unigene Representative Sequence: AF527831 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000453955(lincRNA) (uc004frj.1 ) Additional mRNA sequence: AF527831.1 NR_001549.1
1 DOTS entry : DT.99997121
2 AceView cDNA sequences :
NR_001549 AF527831 GeneLoc Exon Structure
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Expression for TTTY19 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MaxQB ,
plus additional links to
SOURCE , and/or
BioGPS , and/or
UniProtKB ,QIAGEN ,
Primers from
OriGene , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GeneCards Plus
Expression evidence for TTTY19:RNAdb See probesets specificity/sensitivity at GeneAnnot CGAP TAG: --
TTTY19 Protein expression data from MOPED1 2 3 : SOURCE GeneReport for Unigene cluster: Hs.522853 Custom PCR Arrays for TTTY19 Primer Browse OriGene qPCR Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat TTTY19 Search QuantiTect SYBR Green Assays in human, mouse, rat TTTY19 QuantiFast Probe-based Assays in human mouse rat In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TTTY19
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Orthologsfor TTTY19 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section GeneCards Plus
ENSEMBL Gene Tree for TTTY19 (if available)TreeFam Gene Tree for TTTY19 (if available)
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Paralogsfor TTTY19 gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section GeneCards Plus
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Genomic Variantsfor TTTY19 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) , the Human Cytochrome P450 Allele
Nomenclature Database , and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN )
About This Section GeneCards Plus Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical Chr Y pos Sequence # AA Type More # Allele Pop Total More
HapMap Linkage Disequilibrium report for TTTY19 (8572513 - 8573324 bp)
Structural Variations Database of Genomic Variants (DGV) 1 variation for TTTY19 : About this table Site Specific Mutation Identification with PCR Assays
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Disorders
/ Diseasesfor TTTY19 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section GeneCards Plus
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Publicationsfor TTTY19 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section GeneCards Plus PubMed articles for TTTY19 gene integrated from 10 sources :(articles sorted by number of sources associating them with TTTY19) Utopia : connect your pdf to the dynamic
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PubMed id 12815422) 1 (Nature 2003) (PubMed id 15103394) 10 (PubMed id 18089548) 10 (PubMed id 15608161) 10
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External Searches for TTTY19 gene (in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section GeneCards Plus
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Genome Databases showing TTTY19 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section GeneCards Plus
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Other Databases showing TTTY19 gene
(According to HUGE )
About This Section GeneCards Plus --
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Specialized Databases showing TTTY19 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , UniProtKB/TrEMBL , and/or others, e.g. Wikipedia and GeneReviews , via UniProtKB/Swiss-Prot )About This Section GeneCards Plus
Name Description PharmGKB entry for TTTY19 Pharmacogenomics, SNPs, Pathways
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About This Section GeneCards Plus Patent Information for TTTY19 gene: TTTY19 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TTTY19 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , eBioscience , antibodies-online , and/or others, Gene Editing from DNA2.0 . Clones from OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Addgene , Cell lines from GenScript , and ESI BIO , Flow cytometery from eBioscience , PCR Arrays from QIAGEN , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , Enzo Life Sciences , and/or
ApexBio , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from genOway )About This Section GeneCards Plus
Block miRNA regulation of human, mouse, rat TTTY19 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing TTTY19 DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TTTY19 Predesigned siRNA for gene silencing in human mouse rat QuantiFast Probe-based Assays in human mouse rat Search QuantiTect SYBR Green Assays in human, mouse, rat TTTY19 Custom PCR Arrays for TTTY19 Search Chromatin IP Primers for TTTY19 Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat TTTY19 Search GeneGlobe Interaction Network for TTTY19 Search Regulatory tfbs for TTTY19
Search Tocris compounds for TTTY19
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TTTY19
Search ThermoFisher Antibodies for TTTY19
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TTTY19
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