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Aliases for TTTY18 Gene

Subcategory (RNA class) for TTTY18 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY18 Gene

  • Testis-Specific Transcript, Y-Linked 18 (Non-Protein Coding) 2 3
  • Testis-Specific Transcript, Y-Linked 18 2
  • Non-Protein Coding RNA 143 2
  • NCRNA00143 3

External Ids for TTTY18 Gene

ORGUL Members for TTTY18 Gene

Previous GeneCards Identifiers for TTTY18 Gene

  • GC0YU990058
  • GC0YM006117
  • GC0YM008551

Summaries for TTTY18 Gene

GeneCards Summary for TTTY18 Gene

TTTY18 (Testis-Specific Transcript, Y-Linked 18 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for TTTY18 Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY18 Gene

Genomics for TTTY18 Gene

Genomic Location for TTTY18 Gene

Start:
8,683,370 bp from pter
End:
8,683,878 bp from pter
Size:
509 bases
Orientation:
Minus strand

Genomic View for TTTY18 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY18 Gene

No data available for Regulatory Elements for TTTY18 Gene

Proteins for TTTY18 Gene

Post-translational modifications for TTTY18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY18 Gene

Domains for TTTY18 Gene

Gene Families for TTTY18 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTTY18: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY18 Gene

Function for TTTY18 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY18 Gene

Localization for TTTY18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY18 Gene

Pathways for TTTY18 Gene

SuperPathways for TTTY18 Gene

No Data Available

Interacting Proteins for TTTY18 Gene

Gene Ontology (GO) - Biological Process for TTTY18 Gene

None

No data available for Pathways by source for TTTY18 Gene

Transcripts for TTTY18 Gene

mRNA/cDNA for TTTY18 Gene

(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY18

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY18 Gene

No ASD Table

Relevant External Links for TTTY18 Gene

GeneLoc Exon Structure for
TTTY18
ECgene alternative splicing isoforms for
TTTY18

Expression for TTTY18 Gene

mRNA expression in normal human tissues for TTTY18 Gene

mRNA differential expression in normal tissues according to GTEx for TTTY18 Gene

This gene is overexpressed in Testis (46.1).

SOURCE GeneReport for Unigene cluster for TTTY18 Gene Hs.522852

genes like me logo Genes that share expressions with TTTY18: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TTTY18 Gene

Orthologs for TTTY18 Gene

Evolution for TTTY18 Gene

ENSEMBL:
Gene Tree for TTTY18 (if available)
TreeFam:
Gene Tree for TTTY18 (if available)

No data available for Orthologs for TTTY18 Gene

Paralogs for TTTY18 Gene

No data available for Paralogs for TTTY18 Gene

Variants for TTTY18 Gene

Sequence variations from dbSNP and Humsavar for TTTY18 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs1973664 -- 8,685,380(+) CACAA(C/T)ACTCC upstream-variant-2KB
rs35524282 -- 8,684,665(-) ACACT(-/C)CCCTG upstream-variant-2KB
rs112109133 -- 8,683,125(+) GGATC(C/T)TTAGG downstream-variant-500B
rs112860190 -- 8,684,509(+) AATGT(G/T)TAGTG upstream-variant-2KB
rs368854613 -- 8,683,758(+) ATAGC(C/T)GGGCC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY18 Gene

Variant ID Type Subtype PubMed ID
nsv7473 OTHER Inversion 18451855

Relevant External Links for TTTY18 Gene

HapMap Linkage Disequilibrium report
TTTY18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTTY18 Gene

Disorders for TTTY18 Gene

No disorders were found for TTTY18 Gene.

No data available for UniProtKB/Swiss-Prot for TTTY18 Gene

Publications for TTTY18 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY18 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY18
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY18
    • Block miRNA regulation of TTTY18 using miScript Target Protectors

    Sources for TTTY18 Gene

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