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Aliases for TTTY17C Gene

Subcategory (RNA class) for TTTY17C Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY17C Gene

  • Testis-Specific Transcript, Y-Linked 17C (Non-Protein Coding) 2 3
  • Testis-Specific Transcript, Y-Linked 17, Telomeric 3
  • Testis-Specific Transcript, Y-Linked 17C 2
  • Non-Protein Coding RNA 142 2
  • NCRNA00142 3

External Ids for TTTY17C Gene

Previous GeneCards Identifiers for TTTY17C Gene

  • GC0YU900264
  • GC0YM025739
  • GC0YM027329

Summaries for TTTY17C Gene

Entrez Gene Summary for TTTY17C Gene

  • There are three copies of this gene on chromosome Y. This record represents the most telomeric copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY17C Gene

TTTY17C (Testis-Specific Transcript, Y-Linked 17C (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for TTTY17C Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY17C Gene

Genomics for TTTY17C Gene

Genomic Location for TTTY17C Gene

Start:
25,183,643 bp from pter
End:
25,184,773 bp from pter
Size:
1,131 bases
Orientation:
Minus strand

Genomic View for TTTY17C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY17C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY17C Gene

No data available for Regulatory Elements for TTTY17C Gene

Proteins for TTTY17C Gene

Post-translational modifications for TTTY17C Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY17C Gene

Domains for TTTY17C Gene

Gene Families for TTTY17C Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTTY17C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY17C Gene

Function for TTTY17C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY17C Gene

Localization for TTTY17C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY17C Gene

Pathways for TTTY17C Gene

SuperPathways for TTTY17C Gene

No Data Available

Interacting Proteins for TTTY17C Gene

Gene Ontology (GO) - Biological Process for TTTY17C Gene

None

No data available for Pathways by source for TTTY17C Gene

Transcripts for TTTY17C Gene

mRNA/cDNA for TTTY17C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY17C Gene

No ASD Table

Relevant External Links for TTTY17C Gene

GeneLoc Exon Structure for
TTTY17C
ECgene alternative splicing isoforms for
TTTY17C

Expression for TTTY17C Gene

mRNA expression in normal human tissues for TTTY17C Gene

genes like me logo Genes that share expressions with TTTY17C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TTTY17C Gene

Orthologs for TTTY17C Gene

Evolution for TTTY17C Gene

ENSEMBL:
Gene Tree for TTTY17C (if available)
TreeFam:
Gene Tree for TTTY17C (if available)

No data available for Orthologs for TTTY17C Gene

Paralogs for TTTY17C Gene

No data available for Paralogs for TTTY17C Gene

Variants for TTTY17C Gene

Sequence variations from dbSNP and Humsavar for TTTY17C Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs74570258 -- 25,185,904(-) GTTCT(C/T)ATTAG upstream-variant-2KB
rs111369972 -- 25,186,580(+) AGAGG(A/G)AATCC upstream-variant-2KB
rs111474912 -- 25,186,530(+) AAGGA(G/T)GAGCT upstream-variant-2KB
rs111829795 -- 25,186,558(+) AACTA(G/T)TCCAA upstream-variant-2KB
rs112218438 -- 25,185,060(+) CCTTC(A/C)CTTAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY17C Gene

Variant ID Type Subtype PubMed ID
dgv2504e1 CNV Complex 17122850
dgv2505e1 CNV Complex 17122850
dgv2506e1 CNV Complex 17122850
nsv10034 CNV Loss 18304495
essv10843 CNV CNV 17122850
dgv2507e1 CNV Complex 17122850
nsv442825 CNV CNV 18776908
dgv2508e1 CNV Complex 17122850
dgv2509e1 CNV Complex 17122850
dgv2510e1 CNV Complex 17122850
nsv515230 CNV Complex 21397061
nsv469740 CNV Complex 16826518
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061

Relevant External Links for TTTY17C Gene

HapMap Linkage Disequilibrium report
TTTY17C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTTY17C Gene

Disorders for TTTY17C Gene

No disorders were found for TTTY17C Gene.

No data available for UniProtKB/Swiss-Prot for TTTY17C Gene

Publications for TTTY17C Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY17C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY17C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY17C
    • Block miRNA regulation of TTTY17C using miScript Target Protectors

    Sources for TTTY17C Gene

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