Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TTTY17C Gene

Subcategory (RNA class) for TTTY17C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY17C Gene

  • Testis-Specific Transcript, Y-Linked 17C (Non-Protein Coding) 2 3 5
  • Testis-Specific Transcript, Y-Linked 17, Telomeric 3
  • Testis-Specific Transcript, Y-Linked 17C 2
  • Non-Protein Coding RNA 142 2
  • NCRNA00142 3

External Ids for TTTY17C Gene

Previous GeneCards Identifiers for TTTY17C Gene

  • GC0YU900264
  • GC0YM025739
  • GC0YM027329

Summaries for TTTY17C Gene

Entrez Gene Summary for TTTY17C Gene

  • There are three copies of this gene on chromosome Y. This record represents the most telomeric copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY17C Gene

TTTY17C (Testis-Specific Transcript, Y-Linked 17C (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TTTY17C Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY17C Gene

Genomics for TTTY17C Gene

Genomic Location for TTTY17C Gene

Chromosome:
Y
Start:
25,183,643 bp from pter
End:
25,184,773 bp from pter
Size:
1,131 bases
Orientation:
Minus strand

Genomic View for TTTY17C Gene

Genes around TTTY17C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY17C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY17C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY17C Gene

No data available for Regulatory Elements for TTTY17C Gene

Proteins for TTTY17C Gene

Post-translational modifications for TTTY17C Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY17C Gene

Domains & Families for TTTY17C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY17C Gene

Function for TTTY17C Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TTTY17C
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY17C Gene

Localization for TTTY17C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTTY17C Gene

Pathways & Interactions for TTTY17C Gene

SuperPathways for TTTY17C Gene

No Data Available

Interacting Proteins for TTTY17C Gene

Gene Ontology (GO) - Biological Process for TTTY17C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY17C Gene

Drugs & Compounds for TTTY17C Gene

No Compound Related Data Available

Transcripts for TTTY17C Gene

mRNA/cDNA for TTTY17C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TTTY17C
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY17C Gene

No ASD Table

Relevant External Links for TTTY17C Gene

GeneLoc Exon Structure for
TTTY17C
ECgene alternative splicing isoforms for
TTTY17C

Expression for TTTY17C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTTY17C Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY17C Gene:

TTTY17C
genes like me logo Genes that share expression patterns with TTTY17C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY17C Gene

Orthologs for TTTY17C Gene

Evolution for TTTY17C Gene

ENSEMBL:
Gene Tree for TTTY17C (if available)
TreeFam:
Gene Tree for TTTY17C (if available)

No data available for Orthologs for TTTY17C Gene

Paralogs for TTTY17C Gene

No data available for Paralogs for TTTY17C Gene

Variants for TTTY17C Gene

Sequence variations from dbSNP and Humsavar for TTTY17C Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs111369972 -- 25,186,580(+) AGAGG(A/G)AATCC upstream-variant-2KB
rs111474912 -- 25,186,530(+) AAGGA(G/T)GAGCT upstream-variant-2KB
rs111829795 -- 25,186,558(+) AACTA(G/T)TCCAA upstream-variant-2KB
rs112218438 -- 25,185,060(+) CCTTC(A/C)CTTAG upstream-variant-2KB
rs112710020 -- 25,185,815(+) CTCAA(C/T)TACAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY17C Gene

Variant ID Type Subtype PubMed ID
dgv2560e212 CNV gain 25503493
dgv2568e212 CNV gain 25503493
dgv2569e212 CNV loss 25503493
dgv2575e212 CNV gain 25503493
dgv2576e212 CNV loss 25503493
esv3575148 CNV loss 25503493
esv3575157 CNV loss 25503493
esv3575178 CNV loss 25503493
esv3575179 CNV loss 25503493
esv3577610 CNV gain 25503493
esv3577644 CNV gain 25503493
esv3577645 CNV gain 25503493
esv3577652 CNV gain 25503493
nsv10034 CNV loss 18304495
nsv442825 CNV gain+loss 18776908
nsv442826 CNV gain+loss 18776908
nsv469740 CNV gain+loss 16826518
nsv515230 CNV loss 21397061
nsv515231 CNV loss 21397061

Relevant External Links for TTTY17C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY17C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY17C Gene

Disorders for TTTY17C Gene

Relevant External Links for TTTY17C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY17C

No disorders were found for TTTY17C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY17C Gene

Publications for TTTY17C Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H … Page DC (Nature 2003) 3 60

Products for TTTY17C Gene

Sources for TTTY17C Gene

Content
Loading form....