Aliases for TTTY17B Gene
Subcategory (RNA class) for TTTY17B Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for TTTY17B Gene
External Ids for TTTY17B Gene
- HGNC: 31889
- Entrez Gene: 474151
- Ensembl: ENSG00000227439
Previous GeneCards Identifiers for TTTY17B Gene
- GC0YU900263
- GC0YP025040
- GC0YP026632
Summaries for TTTY17B Gene
-
There are three copies of this gene on chromosome Y. This record represents the middle copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]
GeneCards Summary for TTTY17B Gene
TTTY17B (Testis-Specific Transcript, Y-Linked 17B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for TTTY17B Gene
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY17B Gene
Genomics for TTTY17B Gene
Regulatory Element Products
Genomic Locations for TTTY17B Gene
Genomic Locations for TTTY17B Gene
- chrY:24,485,332-24,486,463
- (GRCh38/hg38)
- Size:
- 1,132 bases
- Orientation:
- Plus strand
- chrY:26,631,479-26,632,610
- (GRCh37/hg19)
Genomic View for TTTY17B Gene
Genes around TTTY17B on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- Yq11.23 by Ensembl
- Yq11.23 by Entrez Gene
- Yq11.23 by HGNC
TTTY17B Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for TTTY17B Gene
No data available for GeneHancer (GH) Regulatory Elements for TTTY17B Gene
Proteins for TTTY17B Gene
Post-translational modifications for TTTY17B Gene
No Post-translational modifications
Protein Products
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No data available for DME Specific Peptides for TTTY17B Gene
Domains & Families for TTTY17B Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY17B Gene
Function for TTTY17B Gene
Animal Model Products
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CRISPR Products
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-
Vectors and viruses for KO, Activation, Repression, and more
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Clone Products
- GenScript: Custom all cDNA clones Services for TTTY17B
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-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY17B Gene
Localization for TTTY17B Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTTY17B Gene
Transcripts for TTTY17B Gene
mRNA/cDNA for TTTY17B Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
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- Applied Biological Materials CRISPR for TTTY17B
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
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Clone Products
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-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for TTTY17B Gene
NURSA nuclear receptor signaling pathways regulating expression of TTTY17B Gene:
TTTY17BSOURCE GeneReport for Unigene cluster for TTTY17B Gene:
Hs.741142
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY17B Gene
Orthologs for TTTY17B Gene
No data available for Orthologs for TTTY17B Gene
Paralogs for TTTY17B Gene
No data available for Paralogs for TTTY17B Gene
Variants for TTTY17B Gene
| SNP ID | Clin | Chr 0Y pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs111308874 | -- | 24,483,788(+) | G/A | upstream_transcript_variant | |
| rs111709736 | -- | 24,484,296(+) | A/C | upstream_transcript_variant | |
| rs112087033 | -- | 24,483,915(+) | G/C | upstream_transcript_variant | |
| rs112142687 | -- | 24,483,627(+) | T/C | upstream_transcript_variant | |
| rs112318132 | -- | 24,484,245(+) | G/T | upstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv2560e212 | CNV | gain | 25503493 |
| dgv2568e212 | CNV | gain | 25503493 |
| dgv2569e212 | CNV | loss | 25503493 |
| dgv2575e212 | CNV | gain | 25503493 |
| dgv2576e212 | CNV | loss | 25503493 |
| esv3575148 | CNV | loss | 25503493 |
| esv3575157 | CNV | loss | 25503493 |
| esv3575178 | CNV | loss | 25503493 |
| esv3575179 | CNV | loss | 25503493 |
| esv3577610 | CNV | gain | 25503493 |
| esv3577644 | CNV | gain | 25503493 |
| esv3577645 | CNV | gain | 25503493 |
| esv3577652 | CNV | gain | 25503493 |
| nsv10034 | CNV | loss | 18304495 |
| nsv442825 | CNV | gain+loss | 18776908 |
| nsv442826 | CNV | gain+loss | 18776908 |
| nsv469740 | CNV | gain+loss | 16826518 |
| nsv515230 | CNV | loss | 21397061 |
| nsv515231 | CNV | loss | 21397061 |
Additional Variant Information for TTTY17B Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- TTTY17B
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY17B Gene
Disorders for TTTY17B Gene
Additional Disease Information for TTTY17B
No disorders were found for TTTY17B Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY17B Gene
Publications for TTTY17B Gene
- The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H … Page DC (Nature 2003) 3 58
Products for TTTY17B Gene
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Sources for TTTY17B Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew