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Aliases for TTTY17B Gene

Subcategory (RNA class) for TTTY17B Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY17B Gene

  • Testis-Specific Transcript, Y-Linked 17B (Non-Protein Coding) 2 3
  • Testis-Specific Transcript, Y-Linked 17, Middle 3
  • Testis-Specific Transcript, Y-Linked 17B 2
  • Non-Protein Coding RNA 141 2
  • NCRNA00141 3

External Ids for TTTY17B Gene

Previous GeneCards Identifiers for TTTY17B Gene

  • GC0YU900263
  • GC0YP025040
  • GC0YP026632

Summaries for TTTY17B Gene

Entrez Gene Summary for TTTY17B Gene

  • There are three copies of this gene on chromosome Y. This record represents the middle copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY17B Gene

TTTY17B (Testis-Specific Transcript, Y-Linked 17B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for TTTY17B Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY17B Gene

Genomics for TTTY17B Gene

Genomic Location for TTTY17B Gene

Start:
24,485,332 bp from pter
End:
24,486,463 bp from pter
Size:
1,132 bases
Orientation:
Plus strand

Genomic View for TTTY17B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY17B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY17B Gene

No data available for Regulatory Elements for TTTY17B Gene

Proteins for TTTY17B Gene

Post-translational modifications for TTTY17B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY17B Gene

Domains for TTTY17B Gene

Gene Families for TTTY17B Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTTY17B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY17B Gene

Function for TTTY17B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY17B Gene

Localization for TTTY17B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY17B Gene

Pathways for TTTY17B Gene

SuperPathways for TTTY17B Gene

No Data Available

Interacting Proteins for TTTY17B Gene

Gene Ontology (GO) - Biological Process for TTTY17B Gene

None

No data available for Pathways by source for TTTY17B Gene

Transcripts for TTTY17B Gene

mRNA/cDNA for TTTY17B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY17B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY17B Gene

No ASD Table

Relevant External Links for TTTY17B Gene

GeneLoc Exon Structure for
TTTY17B
ECgene alternative splicing isoforms for
TTTY17B

Expression for TTTY17B Gene

SOURCE GeneReport for Unigene cluster for TTTY17B Gene Hs.741142

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TTTY17B Gene

Orthologs for TTTY17B Gene

Evolution for TTTY17B Gene

ENSEMBL:
Gene Tree for TTTY17B (if available)
TreeFam:
Gene Tree for TTTY17B (if available)

No data available for Orthologs for TTTY17B Gene

Paralogs for TTTY17B Gene

No data available for Paralogs for TTTY17B Gene

Variants for TTTY17B Gene

Sequence variations from dbSNP and Humsavar for TTTY17B Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs150188 -- 24,485,506(+) agagg(A/G)gagaa intron-variant
rs4345756 -- 24,483,352(+) ATCAT(G/T)GTGGA upstream-variant-2KB
rs111308874 -- 24,483,788(+) TGTTT(A/G)TAGTA upstream-variant-2KB
rs111709736 -- 24,484,296(+) TTGAG(A/C)GGTTT upstream-variant-2KB
rs112087033 -- 24,483,915(+) TATCA(C/G)TTTTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY17B Gene

Variant ID Type Subtype PubMed ID
dgv2504e1 CNV Complex 17122850
dgv2505e1 CNV Complex 17122850
dgv2506e1 CNV Complex 17122850
nsv10034 CNV Loss 18304495
essv10843 CNV CNV 17122850
dgv2507e1 CNV Complex 17122850
nsv442825 CNV CNV 18776908
dgv2508e1 CNV Complex 17122850
dgv2509e1 CNV Complex 17122850
dgv2510e1 CNV Complex 17122850
nsv515230 CNV Complex 21397061
nsv469740 CNV Complex 16826518
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061

Relevant External Links for TTTY17B Gene

HapMap Linkage Disequilibrium report
TTTY17B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTTY17B Gene

Disorders for TTTY17B Gene

No disorders were found for TTTY17B Gene.

No data available for UniProtKB/Swiss-Prot for TTTY17B Gene

Publications for TTTY17B Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY17B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY17B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY17B
    • Block miRNA regulation of TTTY17B using miScript Target Protectors

    Sources for TTTY17B Gene

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