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Aliases for TTTY17A Gene

Subcategory (RNA class) for TTTY17A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY17A Gene

  • Testis-Specific Transcript, Y-Linked 17A (Non-Protein Coding) 2 3 5
  • Testis-Specific Transcript, Y-Linked 17A 2
  • Testis-Specific Transcript, Y-Linked 17 2
  • Non-Protein Coding RNA 140 2
  • NCRNA00140 3
  • TTTY17 3

External Ids for TTTY17A Gene

Previous HGNC Symbols for TTTY17A Gene

  • TTTY17

Previous GeneCards Identifiers for TTTY17A Gene

  • GC0YP023408
  • GC0YP024997
  • GC0YP017856

Summaries for TTTY17A Gene

Entrez Gene Summary for TTTY17A Gene

  • There are three copies of this gene on chromosome Y. This record represents the most centromeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for TTTY17A Gene

TTTY17A (Testis-Specific Transcript, Y-Linked 17A (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY17A Gene

Genomics for TTTY17A Gene

Genomic Location for TTTY17A Gene

Chromosome:
Y
Start:
22,851,584 bp from pter
End:
22,852,715 bp from pter
Size:
1,132 bases
Orientation:
Plus strand

Genomic View for TTTY17A Gene

Genes around TTTY17A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY17A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY17A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY17A Gene

No data available for Regulatory Elements for TTTY17A Gene

Proteins for TTTY17A Gene

Post-translational modifications for TTTY17A Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY17A Gene

Domains & Families for TTTY17A Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY17A Gene

Function for TTTY17A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY17A Gene

Localization for TTTY17A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY17A Gene

Pathways & Interactions for TTTY17A Gene

SuperPathways for TTTY17A Gene

No Data Available

Interacting Proteins for TTTY17A Gene

Gene Ontology (GO) - Biological Process for TTTY17A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY17A Gene

Drugs & Compounds for TTTY17A Gene

No Compound Related Data Available

Transcripts for TTTY17A Gene

mRNA/cDNA for TTTY17A Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY17A Gene

No ASD Table

Relevant External Links for TTTY17A Gene

GeneLoc Exon Structure for
TTTY17A
ECgene alternative splicing isoforms for
TTTY17A

Expression for TTTY17A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTTY17A Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY17A Gene:

TTTY17A

SOURCE GeneReport for Unigene cluster for TTTY17A Gene:

Hs.522869
genes like me logo Genes that share expression patterns with TTTY17A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY17A Gene

Orthologs for TTTY17A Gene

Evolution for TTTY17A Gene

ENSEMBL:
Gene Tree for TTTY17A (if available)
TreeFam:
Gene Tree for TTTY17A (if available)

No data available for Orthologs for TTTY17A Gene

Paralogs for TTTY17A Gene

No data available for Paralogs for TTTY17A Gene

Variants for TTTY17A Gene

Sequence variations from dbSNP and Humsavar for TTTY17A Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs796643119 -- 22,850,124(+) CTGAT(C/G)CTATA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY17A Gene

Variant ID Type Subtype PubMed ID
dgv2560e212 CNV gain 25503493
dgv2568e212 CNV gain 25503493
dgv2569e212 CNV loss 25503493
dgv2575e212 CNV gain 25503493
dgv2576e212 CNV loss 25503493
esv3575148 CNV loss 25503493
esv3575157 CNV loss 25503493
esv3575178 CNV loss 25503493
esv3575179 CNV loss 25503493
esv3577610 CNV gain 25503493
esv3577644 CNV gain 25503493
esv3577645 CNV gain 25503493
esv3577652 CNV gain 25503493
nsv10034 CNV loss 18304495
nsv442825 CNV gain+loss 18776908
nsv442826 CNV gain+loss 18776908
nsv469740 CNV gain+loss 16826518
nsv515230 CNV loss 21397061
nsv515231 CNV loss 21397061

Relevant External Links for TTTY17A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY17A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY17A Gene

Disorders for TTTY17A Gene

Relevant External Links for TTTY17A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTTY17A

No disorders were found for TTTY17A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY17A Gene

Publications for TTTY17A Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 64

Products for TTTY17A Gene

Sources for TTTY17A Gene

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