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Aliases for TTTY16 Gene

Subcategory (RNA class) for TTTY16 Gene

undefined

Quality Score for this RNA gene is

3

Aliases for TTTY16 Gene

  • Testis-Specific Transcript, Y-Linked 16 (Non-Protein Coding) 2 3
  • Testis-Specific Transcript, Y-Linked 16 2
  • Non-Protein Coding RNA 139 2
  • NCRNA00139 3

External Ids for TTTY16 Gene

ORGUL Members for TTTY16 Gene

Previous GeneCards Identifiers for TTTY16 Gene

  • GC0YU990056
  • GC0YM007610
  • GC0YM007567

Summaries for TTTY16 Gene

GeneCards Summary for TTTY16 Gene

TTTY16 (Testis-Specific Transcript, Y-Linked 16 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for TTTY16 Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY16 Gene

Genomics for TTTY16 Gene

Regulatory Elements for TTTY16 Gene

Genomic Location for TTTY16 Gene

Start:
7,699,357 bp from pter
End:
7,701,247 bp from pter
Size:
1,891 bases
Orientation:
Minus strand

Genomic View for TTTY16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY16 Gene

Proteins for TTTY16 Gene

Post-translational modifications for TTTY16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY16 Gene

Domains for TTTY16 Gene

Gene Families for TTTY16 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTTY16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY16 Gene

Function for TTTY16 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY16 Gene

Localization for TTTY16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTTY16 Gene

Pathways for TTTY16 Gene

SuperPathways for TTTY16 Gene

No Data Available

Interacting Proteins for TTTY16 Gene

Gene Ontology (GO) - Biological Process for TTTY16 Gene

None

No data available for Pathways by source for TTTY16 Gene

Transcripts for TTTY16 Gene

mRNA/cDNA for TTTY16 Gene

(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY16

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY16 Gene

No ASD Table

Relevant External Links for TTTY16 Gene

GeneLoc Exon Structure for
TTTY16
ECgene alternative splicing isoforms for
TTTY16

Expression for TTTY16 Gene

mRNA expression in normal human tissues for TTTY16 Gene

SOURCE GeneReport for Unigene cluster for TTTY16 Gene Hs.522848

genes like me logo Genes that share expressions with TTTY16: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TTTY16 Gene

Orthologs for TTTY16 Gene

Evolution for TTTY16 Gene

ENSEMBL:
Gene Tree for TTTY16 (if available)
TreeFam:
Gene Tree for TTTY16 (if available)

No data available for Orthologs for TTTY16 Gene

Paralogs for TTTY16 Gene

No data available for Paralogs for TTTY16 Gene

Variants for TTTY16 Gene

Sequence variations from dbSNP and Humsavar for TTTY16 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs1005041 -- 7,702,781(+) TCCAT(C/G)TTTTT upstream-variant-2KB
rs3951154 -- 7,699,642(+) TCCAT(A/T)AAAAA intron-variant
rs11799256 -- 7,699,970(+) cagga(A/G)aatgg intron-variant
rs13303599 -- 7,703,081(+) GGGAG(A/G)GAGTG upstream-variant-2KB
rs13304869 -- 7,702,637(+) TTTCA(A/G)GCTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTTY16 Gene

Variant ID Type Subtype PubMed ID
nsv7473 OTHER Inversion 18451855

Relevant External Links for TTTY16 Gene

HapMap Linkage Disequilibrium report
TTTY16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTTY16 Gene

Disorders for TTTY16 Gene

No disorders were found for TTTY16 Gene.

No data available for UniProtKB/Swiss-Prot for TTTY16 Gene

Publications for TTTY16 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for TTTY16 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY16
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY16
    • Block miRNA regulation of TTTY16 using miScript Target Protectors

    Sources for TTTY16 Gene

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