Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TTTY16 Gene

Subcategory (RNA class) for TTTY16 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY16 Gene

  • Testis-Specific Transcript, Y-Linked 16 (Non-Protein Coding) 2 3 5
  • Testis-Specific Transcript, Y-Linked 16 2
  • Non-Protein Coding RNA 139 2
  • NCRNA00139 3

External Ids for TTTY16 Gene

Previous GeneCards Identifiers for TTTY16 Gene

  • GC0YU990056
  • GC0YM007610
  • GC0YM007567

Summaries for TTTY16 Gene

GeneCards Summary for TTTY16 Gene

TTTY16 (Testis-Specific Transcript, Y-Linked 16 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TTTY16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY16 Gene

Genomics for TTTY16 Gene

GeneHancer (GH) Regulatory Elements for TTTY16 Gene

Promoters and enhancers for TTTY16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0YI007701 Enhancer 0.2 ENCODE 550.8 -1.1 -1050 0.8 TTTY16 PIR39531
GH0YI007723 Enhancer 0.5 FANTOM5 ENCODE 0.3 -23.2 -23181 1.2 TTTY16 PIR39531 RFTN1P1
GH0YI007724 Enhancer 0.2 ENCODE 0.3 -22.1 -22128 0.2 TTTY16 PIR39531 RFTN1P1
GH0YI007730 Enhancer 0.2 ENCODE 0.3 -28.9 -28928 0.2 TTTY16 PIR39531 RFTN1P1
GH0YI007769 Enhancer 0.2 ENCODE 0.2 -67.9 -67877 0.2 PIR39531 RFTN1P1 TTTY16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TTTY16 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TTTY16 gene promoter:

Genomic Locations for TTTY16 Gene

Genomic Locations for TTTY16 Gene
chrY:7,699,357-7,701,247
(GRCh38/hg38)
Size:
1,891 bases
Orientation:
Minus strand
chrY:7,567,398-7,569,288
(GRCh37/hg19)

Genomic View for TTTY16 Gene

Genes around TTTY16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY16 Gene

Proteins for TTTY16 Gene

Post-translational modifications for TTTY16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY16 Gene

Domains & Families for TTTY16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY16 Gene

Function for TTTY16 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY16 Gene

Localization for TTTY16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTTY16 Gene

Pathways & Interactions for TTTY16 Gene

SuperPathways for TTTY16 Gene

No Data Available

Interacting Proteins for TTTY16 Gene

Gene Ontology (GO) - Biological Process for TTTY16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY16 Gene

Drugs & Compounds for TTTY16 Gene

No Compound Related Data Available

Transcripts for TTTY16 Gene

mRNA/cDNA for TTTY16 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY16 Gene

No ASD Table

Relevant External Links for TTTY16 Gene

GeneLoc Exon Structure for
TTTY16
ECgene alternative splicing isoforms for
TTTY16

Expression for TTTY16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTTY16 Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY16 Gene:

TTTY16

SOURCE GeneReport for Unigene cluster for TTTY16 Gene:

Hs.522848
genes like me logo Genes that share expression patterns with TTTY16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY16 Gene

Orthologs for TTTY16 Gene

Evolution for TTTY16 Gene

ENSEMBL:
Gene Tree for TTTY16 (if available)
TreeFam:
Gene Tree for TTTY16 (if available)

No data available for Orthologs for TTTY16 Gene

Paralogs for TTTY16 Gene

No data available for Paralogs for TTTY16 Gene

Variants for TTTY16 Gene

Sequence variations from dbSNP and Humsavar for TTTY16 Gene

SNP ID Clin Chr 0Y pos Variation AA Info Type
rs1004100280 -- 7,698,939(-) A/G downstream_transcript_variant
rs1005041 -- 7,702,781(-) C/G upstream_transcript_variant
rs1007889047 -- 7,700,364(-) T/C intron_variant
rs1007890730 -- 7,701,861(-) G/A upstream_transcript_variant
rs1011643263 -- 7,702,064(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY16 Gene

Variant ID Type Subtype PubMed ID
esv3577579 CNV gain 25503493
nsv7473 OTHER inversion 18451855

Additional Variant Information for TTTY16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY16 Gene

Disorders for TTTY16 Gene

Additional Disease Information for TTTY16

No disorders were found for TTTY16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY16 Gene

Publications for TTTY16 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H … Page DC (Nature 2003) 3 58

Products for TTTY16 Gene

Sources for TTTY16 Gene

Content
Loading form....