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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

TTTY15 Gene

RNA gene GIFtS: 26
GCID: GC0YP014774

testis-specific transcript, Y-linked 15 (non-protein coding)

(Previous names: testis-specific transcript, Y-linked 15 )

Explore 2 diseases affiliated with
TTTY15 via

MalaCards

our new
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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 10

Aliases
Testis-Specific Transcript, Y-Linked 15 (Non-Protein Coding)¹ ²
NCRNA00138¹ ²
DKFZP434I143¹
Testis-Specific Transcript, Y-Linked 15¹

External Ids:	HGNC: 18567¹	Entrez Gene: 64595²	Ensembl: ENSG00000233864⁷

ORGUL members:	fRNAdb¹⁰:FR365098
	NCBI:AL080135
	NONCODE:n371627 n371595
	RNAdb:LIT2232

Export aliases for TTTY15 gene to outside databases

Previous GC identifers: GC0YU990036 GC0YP013782 GC0YP013212 GC0YP009427

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

fRNAdb sequence ontology for TTTY15:
mature_transcript - A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000024.9 NT_011875.12

Regulatory elements:

Search SABiosciences Regulatory transcription factor binding sites for TTTY15
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

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Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TTTY15

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Yq11.1 Ensembl cytogenetic band: Yq11.21 HGNC cytogenetic band: Yq11.1

TTTY15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TTTY15 gene location

GeneLoc information about chromosome Y GeneLoc Exon Structure

GeneLoc location for GC0YP014774: view genomic region (about GC identifiers)

Start:	14,774,265 bp from pter	End:	14,804,162 bp from pter
Size:	29,898 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB: --

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for TTTY15

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

Unigene Cluster for TTTY15:

Testis-specific transcript, Y-linked 15 (non-protein coding)

Hs.433656 [show with all ESTs]

Unigene Representative Sequence: AL080135

4 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000440408(lincRNA)(uc004fss.3) ENST00000457658(lincRNA) ENST00000417071(lincRNA) ENST00000543097(lincRNA)

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Additional cDNA sequence:

AL080135.1 NR_001545.2

2 DOTS entries:

DT.205133 DT.100734324

24/88 AceView cDNA sequences (see all 88):

BX098675 AK057605 BF592847 AI580306 AA864609 CK823171 CA394805 BQ002211

BQ101190 BQ934848 H70731 AL138331 AL045209 NR_001545 CA393062 N48507

Z21230 AF000986 AL080135 BE646319 CD110537 BV183454 AA224051 CD654011

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for TTTY15:RNAdb

TTTY15 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image
Genevestigator expression for TTTY15

SOURCE GeneReport for Unigene cluster: Hs.433656

SABiosciences Custom PCR Arrays for TTTY15

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

--

ENSEMBL Gene Tree for TTTY15 (if available)
TreeFam Gene Tree for TTTY15 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr Y pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs56095917^1,2	C	--	14773154(+)	`TGTGTT/GCTAGG`	1	--	us2k¹		1		WA	2
rs9786605^1,2	C,F	--	14777360(+)	`TGTCAG/ATGAAA`	1	--	int¹		2		NA WA	4
rs9786246^1,2	C	--	14777842(+)	`GTATTT/CGTCTC`	1	--	int¹		5		WA NA CSA	7
rs9786801^1,2	C,F	--	14785570(+)	`ttcttG/Cttgcc`	1	--	int¹		2		NA WA	4
rs76008626^1,2	C	--	14786629(+)	`GGCCTC/TCCAAA`	1	--	int¹		0	--	--	--	--
rs77820536^1,2	C	--	14787752(+)	`TATATA/GTGTGT`	1	--	int¹		0	--	--	--	--
rs13304566^1,2	C	--	14788344(+)	`CGGGAA/GGTCAG`	1	--	int¹		1		NA	2
rs3913^1,2	C,H	--	14790163(+)	`GCTCTA/GCCTCC`	1	--	int¹		6		MN NS EA NA	928
rs72609648^1,2	C	--	14796358(+)	`TTTGCA/TTGTGG`	1	--	int¹		0	--	--	--	--
rs34075692^1,2	C	--	14798272(+)	`CTCTTC/TACCTG`	1	--	int¹		1		NA	2

HapMap Linkage Disequilibrium report for TTTY15 (14774265 - 14804162 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for TTTY15: --

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

TTTY15 for disorders About GeneDecksing

2 diseases for TTTY15: About MalaCards

male infertility infertility

Export disorders for TTTY15 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for TTTY15 gene integrated from 9 sources:
(articles sorted by number of sources associating them with TTTY15)

Utopia: connect your pdf to the dynamic
world of online information

The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PubMed id 12815422)¹ Skaletsky H.... Page D.C. (2003)
(PubMed id 10507722)¹⁰
(PubMed id 15608161)¹⁰

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 64595	HGNC: 18567	AceView: USP9YandTTTY15	Ensembl:ENSG00000233864	euGenes: HUgn64595
ECgene: TTTY15	H-InvDB: TTTY15

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for TTTY15	Pharmacogenomics, SNPs, Pathways

Intellectual Property for TTTY15 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for TTTY15 gene:
Search GeneIP for patents involving TTTY15

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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TTTY15 Gene

testis-specific transcript, Y-linked 15 (non-protein coding)

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TTTY15 Gene

testis-specific transcript, Y-linked 15 (non-protein coding)

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