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Aliases for TTTY13 Gene

Subcategory (RNA class) for TTTY13 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TTTY13 Gene

  • Testis-Specific Transcript, Y-Linked 13 (Non-Protein Coding) 2 3
  • TTY13 3 4
  • Testis-Specific Transcript, Y-Linked 13 2
  • Non-Protein Coding RNA 136 2
  • Testis Transcript Y 13 3
  • Transcript Y 13 3
  • NCRNA00136 3

External Ids for TTTY13 Gene

ORGUL Members for TTTY13 Gene

Summaries for TTTY13 Gene

GeneCards Summary for TTTY13 Gene

TTTY13 (Testis-Specific Transcript, Y-Linked 13 (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

fRNAdb sequence ontologies for TTTY13 Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTTY13 Gene

Genomics for TTTY13 Gene

Genomic Location for TTTY13 Gene

Start:
21,583,600 bp from pter
End:
21,594,666 bp from pter
Size:
11,067 bases
Orientation:
Minus strand

Genomic View for TTTY13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTTY13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTTY13 Gene

Regulatory Elements for TTTY13 Gene

Proteins for TTTY13 Gene

  • Protein details for TTTY13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BZ97-TTY13_HUMAN
    Recommended name:
    Putative transcript Y 13 protein
    Protein Accession:
    Q9BZ97
    Secondary Accessions:

    Protein attributes for TTTY13 Gene

    Size:
    58 amino acids
    Molecular mass:
    6256 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TTTY13 Gene

Proteomics data for TTTY13 Gene at MOPED

Post-translational modifications for TTTY13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY13 Gene

Domains for TTTY13 Gene

Gene Families for TTTY13 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for TTTY13 Gene

ProtoNet:
genes like me logo Genes that share domains with TTTY13: view

No data available for UniProtKB/Swiss-Prot for TTTY13 Gene

Function for TTTY13 Gene

Phenotypes for TTTY13 Gene

GenomeRNAi human phenotypes for TTTY13:
genes like me logo Genes that share phenotypes with TTTY13: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTTY13 Gene

Localization for TTTY13 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TTTY13 Gene

Membrane; Single-pass membrane protein.

No data available for Gene Ontology (GO) - Cellular Components for TTTY13 Gene

Pathways for TTTY13 Gene

SuperPathways for TTTY13 Gene

No Data Available

Interacting Proteins for TTTY13 Gene

Gene Ontology (GO) - Biological Process for TTTY13 Gene

None

No data available for Pathways by source for TTTY13 Gene

Transcripts for TTTY13 Gene

mRNA/cDNA for TTTY13 Gene

(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY13 Gene

No ASD Table

Relevant External Links for TTTY13 Gene

GeneLoc Exon Structure for
TTTY13
ECgene alternative splicing isoforms for
TTTY13

Expression for TTTY13 Gene

mRNA expression in normal human tissues for TTTY13 Gene

mRNA differential expression in normal tissues according to GTEx for TTTY13 Gene

This gene is overexpressed in Testis (42.7) and Brain - Caudate (basal ganglia) (10.3).

SOURCE GeneReport for Unigene cluster for TTTY13 Gene Hs.615432

genes like me logo Genes that share expressions with TTTY13: view

Orthologs for TTTY13 Gene

Evolution for TTTY13 Gene

ENSEMBL:
Gene Tree for TTTY13 (if available)
TreeFam:
Gene Tree for TTTY13 (if available)

No data available for Orthologs for TTTY13 Gene

Paralogs for TTTY13 Gene

Selected SIMAP similar genes for TTTY13 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TTTY13: view

No data available for Paralogs for TTTY13 Gene

Variants for TTTY13 Gene

Sequence variations from dbSNP and Humsavar for TTTY13 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs2085530 -- 21,587,306(-) GGATT(A/C)AGGAT intron-variant
rs2085531 -- 21,587,111(-) ACACA(A/C)CCACG intron-variant
rs2608381 -- 21,596,242(+) TTTCC(A/C)GCGTC upstream-variant-2KB
rs2608382 -- 21,596,300(+) GGAGA(A/C)GACCC upstream-variant-2KB
rs2631613 -- 21,588,653(-) TCTCA(C/T)ACCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY13 Gene

Variant ID Type Subtype PubMed ID
dgv2501e1 CNV Complex 17122850
dgv2502e1 CNV Complex 17122850
dgv2503e1 CNV Complex 17122850
essv23856 CNV CNV 17122850
nsv469635 CNV Loss 16826518
nsv471611 CNV Gain+Loss 15918152
nsv10026 CNV Gain 18304495

Relevant External Links for TTTY13 Gene

HapMap Linkage Disequilibrium report
TTTY13
Human Gene Mutation Database (HGMD)
TTTY13

Disorders for TTTY13 Gene

No disorders were found for TTTY13 Gene.

No data available for UniProtKB/Swiss-Prot for TTTY13 Gene

Publications for TTTY13 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 4

Products for TTTY13 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTTY13
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTTY13
    • Block miRNA regulation of TTTY13 using miScript Target Protectors

    Sources for TTTY13 Gene

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