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TTTY1 Gene(RNA Gene)

Testis-Specific Transcript, Y-Linked 1 (Non-Protein Coding)

GCID:
GC0YM009753
GIFtS:
13
Genes Participants
UDN Logo

Aliases for TTTY1 Gene

Subcategory (RNA class) for TTTY1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTTY1 Gene

  • Testis-Specific Transcript, Y-Linked 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 33 2 3
  • Testis-Specific Transcript, Y-Linked 1 2
  • Testis-Specific Testis Transcript Y 1 3
  • Non-Protein Coding RNA 33 2
  • NCRNA00033 3
  • LINC00033 3
  • TTY1 3

External Ids for TTTY1 Gene

Previous GeneCards Identifiers for TTTY1 Gene

  • GC0YP006224
  • GC0YU900004
  • GC0YM009204
  • GC0YM010184
  • GC0YM009591

Summaries for TTTY1 Gene

GeneCards Summary for TTTY1 Gene

TTTY1 (Testis-Specific Transcript, Y-Linked 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TTTY1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTTY1 Gene

Genomics for TTTY1 Gene

Products:

  1. Regulatory Element

Genomic Locations for TTTY1 Gene

Genomic Locations for TTTY1 Gene
chrY:9,753,156-9,774,289
(GRCh38/hg38)
Size:
21,134 bases
Orientation:
Minus strand
chrY:9,590,765-9,611,898
(GRCh37/hg19)

Genomic View for TTTY1 Gene

Genes around TTTY1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTTY1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTTY1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TTTY1 Gene

No data available for GeneHancer (GH) Regulatory Elements for TTTY1 Gene

Proteins for TTTY1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TTTY1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTTY1 Gene

Domains & Families for TTTY1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTTY1 Gene

Function for TTTY1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTTY1 Gene

Localization for TTTY1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTTY1 Gene

Pathways & Interactions for TTTY1 Gene

SuperPathways for TTTY1 Gene

PathCards logo More details on SuperPathways for TTTY1
No Data Available

Interacting Proteins for TTTY1 Gene

Gene Ontology (GO) - Biological Process for TTTY1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTTY1 Gene

Drugs & Compounds for TTTY1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TTTY1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TTTY1 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTTY1 Gene

No ASD Table

Relevant External Links for TTTY1 Gene

GeneLoc Exon Structure for
TTTY1
ECgene alternative splicing isoforms for
TTTY1

Expression for TTTY1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTTY1 Gene

mRNA expression in normal human tissues for TTTY1 Gene
mRNA expression by BioGPS for TTTY1 GenemRNA expression by GTEx for TTTY1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TTTY1 Gene:

TTTY1

SOURCE GeneReport for Unigene cluster for TTTY1 Gene:

Hs.584729
genes like me logo Genes that share expression patterns with TTTY1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTTY1 Gene

Orthologs for TTTY1 Gene

Evolution for TTTY1 Gene

ENSEMBL:
Gene Tree for TTTY1 (if available)
TreeFam:
Gene Tree for TTTY1 (if available)

No data available for Orthologs for TTTY1 Gene

Paralogs for TTTY1 Gene

No data available for Paralogs for TTTY1 Gene

Variants for TTTY1 Gene

Sequence variations from dbSNP and Humsavar for TTTY1 Gene

SNP ID Clin Chr 0Y pos Variation AA Info Type
rs112601201 -- 9,763,373(-) G/T intron_variant
rs2535815 -- 9,759,110(-) C/A intron_variant
rs368989698 -- 9,759,935(-) G/A intron_variant
rs372401612 -- 9,754,061(-) G/T intron_variant
rs373002854 -- 9,767,459(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TTTY1 Gene

Variant ID Type Subtype PubMed ID
esv2758903 CNV gain+loss 17122850
esv3577578 CNV gain 25503493
nsv508820 CNV insertion 20534489
nsv7473 OTHER inversion 18451855

Additional Variant Information for TTTY1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTTY1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTTY1 Gene

Disorders for TTTY1 Gene

Additional Disease Information for TTTY1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for TTTY1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTTY1 Gene

Publications for TTTY1 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H … Page DC (Nature 2003) 3 58
  2. A potential role for CXCR3 chemokines in the response to ocular HSV infection. (PMID: 12815542) Lundberg P … Cantin E (Current eye research 2003) 3 58
  3. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58
  4. Functional coherence of the human Y chromosome. (PMID: 9381176) Lahn BT … Page DC (Science (New York, N.Y.) 1997) 3 58

Products for TTTY1 Gene

Sources for TTTY1 Gene

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