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Aliases for TTN-AS1 Gene

Subcategory (RNA class) for TTN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTN-AS1 Gene

  • TTN Antisense RNA 1 2 3 5
  • TTN Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TTN-AS1 Gene

Previous GeneCards Identifiers for TTN-AS1 Gene

  • GC02P179389

Summaries for TTN-AS1 Gene

Entrez Gene Summary for TTN-AS1 Gene

  • This gene encodes a non-coding RNA transcribed from the opposite strand to the titin gene. [provided by RefSeq, Aug 2016]

GeneCards Summary for TTN-AS1 Gene

TTN-AS1 (TTN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTN-AS1 Gene

Genomics for TTN-AS1 Gene

Regulatory Elements for TTN-AS1 Gene

Enhancers for TTN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G178522 1.1 ENCODE 0.7 +2.2 2249 1.8 HDGF PKNOX1 FOXA2 ARID4B SIN3A CBX5 ZNF143 KLF13 ZNF263 SP3 FKBP7 TTN-AS1 ENSG00000270956
GH02G178530 1.1 Ensembl ENCODE 0.4 +9.8 9793 1.9 HDGF TBP TBL1XR1 BMI1 YBX1 CBX5 RELB ETV6 IKZF2 CREM FKBP7 TTN-AS1 ENSG00000270956
GH02G178484 0.9 Ensembl 0.3 -36.5 -36477 0.6 NFIB INSM2 FEZF1 ZNF366 ZSCAN5C ZNF350 ZNF391 ZNF263 ZNF174 TSHZ1 LOC101927027 FKBP7 PRKRA DFNB59 ENSG00000271401 PLEKHA3 TTN-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TTN-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TTN-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000126983 973 2000 HDGF PKNOX1 FOXA2 ARID4B SIN3A CBX5 ZNF143 KLF13 ZNF263 SP3

Genomic Location for TTN-AS1 Gene

Chromosome:
2
Start:
178,521,183 bp from pter
End:
178,779,963 bp from pter
Size:
258,781 bases
Orientation:
Plus strand

Genomic View for TTN-AS1 Gene

Genes around TTN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTN-AS1 Gene

Proteins for TTN-AS1 Gene

Post-translational modifications for TTN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTN-AS1 Gene

Domains & Families for TTN-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTN-AS1 Gene

Function for TTN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTN-AS1 Gene

Localization for TTN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTN-AS1 Gene

Pathways & Interactions for TTN-AS1 Gene

SuperPathways for TTN-AS1 Gene

No Data Available

Interacting Proteins for TTN-AS1 Gene

Gene Ontology (GO) - Biological Process for TTN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTN-AS1 Gene

Drugs & Compounds for TTN-AS1 Gene

No Compound Related Data Available

Transcripts for TTN-AS1 Gene

mRNA/cDNA for TTN-AS1 Gene

(5) Additional mRNA sequences :
(71) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTN-AS1 Gene

TTN antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTN-AS1 Gene

No ASD Table

Relevant External Links for TTN-AS1 Gene

GeneLoc Exon Structure for
TTN-AS1
ECgene alternative splicing isoforms for
TTN-AS1

Expression for TTN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TTN-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x36.9), Heart - Left Ventricle (x8.6), and Heart - Atrial Appendage (x4.4).

SOURCE GeneReport for Unigene cluster for TTN-AS1 Gene:

Hs.710694
genes like me logo Genes that share expression patterns with TTN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTN-AS1 Gene

Orthologs for TTN-AS1 Gene

Evolution for TTN-AS1 Gene

ENSEMBL:
Gene Tree for TTN-AS1 (if available)
TreeFam:
Gene Tree for TTN-AS1 (if available)

No data available for Orthologs for TTN-AS1 Gene

Paralogs for TTN-AS1 Gene

No data available for Paralogs for TTN-AS1 Gene

Variants for TTN-AS1 Gene

Sequence variations from dbSNP and Humsavar for TTN-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1057518195 Pathogenic 178,535,790(-) CTCTC(C/T)GAGGT intron-variant, nc-transcript-variant, reference, stop-gained
rs1057518851 Pathogenic 178,571,565(-) CACCT(A/G)GCAAA intron-variant, reference, stop-gained
rs112240298 Pathogenic 178,538,945(+) CCTTA(C/G/T)CAAAT intron-variant, nc-transcript-variant, splice-donor-variant
rs199469665 Pathogenic 178,531,084(-) CCGCC(-/ACCAAGTG)ACCAC intron-variant, reference, frameshift-variant
rs202094100 Pathogenic 178,613,870(+) TCACA(A/C/T)CATGT intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for TTN-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759103 CNV loss 17122850
nsv1000642 CNV loss 25217958
nsv3058 CNV insertion 18451855
nsv522036 CNV gain 19592680
nsv834467 CNV loss 17160897
nsv834468 CNV gain 17160897
nsv954437 CNV duplication 24416366

Relevant External Links for TTN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTN-AS1 Gene

Disorders for TTN-AS1 Gene

Relevant External Links for TTN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTN-AS1

No disorders were found for TTN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTN-AS1 Gene

Publications for TTN-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TTN-AS1 Gene

Sources for TTN-AS1 Gene

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