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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TTLL3 Gene

protein-coding   GIFtS: 44
GCID: GC03P009851

tubulin tyrosine ligase-like family, member 3

  Search for TTLL3
in our new
 Human Malady Compendium 
Biological research products
for TTLL3
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Tubulin Tyrosine Ligase-Like Family, Member 31 2
HOTTL1 2 3
Tubulin--Tyrosine Ligase-Like Protein 32 3
DKFZP434B1031
Tubulin Monoglycylase TTLL32
EC 6.3.2.-3

External Ids:    HGNC: 244831   Entrez Gene: 261402   Ensembl: ENSG000002140217   UniProtKB: Q9Y4R73   

Export aliases for TTLL3 gene to outside databases

Previous GC identifers: GC03P009836 GC03P009810 GC03P009811 GC03P009749 GC03P009813 GC03P009850 GC03P009788


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: TTLL3_HUMAN, Q9Y4R7
Function: Monoglycylase which modifies alpha- and beta-tubulin, generating side chains of glycine on the gamma-carboxyl
groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin. Involved in the
side-chain initiation step of the glycylation reaction by adding a single glycine chain to generate monoglycine side
chains. Not involved in elongation step of the polyglycylation reaction

Gene Wiki entry for TTLL3


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_022517.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TTLL3 gene promoter:
         NF-1   p300   HEN1   AREB6   E2F-1   E2F   COMP1   SEF-1 (1)   TGIF   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTTLL3 promoter sequence
   Search SABiosciences Chromatin IP Primers for TTLL3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TTLL3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p25.3   Ensembl cytogenetic band:  3p25.3   HGNC cytogenetic band: 3p25.3

TTLL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TTLL3 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P009851:  view genomic region     (about GC identifiers)

Start:
9,849,770 bp from pter      End:
9,896,822 bp from pter
Size:
47,053 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TTLL3_HUMAN, Q9Y4R7 (See protein sequence)
Recommended Name: Tubulin monoglycylase TTLL3  
Size: 772 amino acids; 87414 Da
Subcellular location: Cytoplasm, cytoskeleton (By similarity). Cell projection, cilium (By similarity). Cytoplasm,
cytoskeleton, cilium axoneme (By similarity)
Secondary accessions: Q4KMS8 Q6AWA3 Q6ZU95 Q8NDN8 Q96GG8 Q9H876 Q9UI99
Alternative splicing: 4 isoforms:  Q9Y4R7-1   Q9Y4R7-2   Q9Y4R7-5   Q9Y4R7-6   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TTLL3: NX_Q9Y4R7

TTLL3 Protein expression data from MOPED and PaxDb: --

REFSEQ proteins: NP_001021100.3  
ENSEMBL proteins: 
 ENSP00000399930   ENSP00000399782   ENSP00000401686   ENSP00000414965   ENSP00000408128  
 ENSP00000394481   ENSP00000400462   ENSP00000402197   ENSP00000395912   ENSP00000392549  
 ENSP00000389904   ENSP00000398996   ENSP00000412915   ENSP00000396606   ENSP00000312148  
 ENSP00000399191   ENSP00000398097   ENSP00000373338   ENSP00000430051   ENSP00000409632  
 ENSP00000409246   ENSP00000403874   ENSP00000446659   ENSP00000380416   ENSP00000394462  

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Uscn Proteins for TTLL3

Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm ----
GO:0005874microtubule IEA--
GO:0005929cilium ISS--
GO:0015630microtubule cytoskeleton ISS--
GO:0035085cilium axoneme ISS--

TTLL3 for ontologies           About GeneDecksing



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Uscn ELISAs and CLIAs for TTLL3


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

TTLL3 for domains           About GeneDecksing

1 InterPro domain/family:
 IPR004344 Tub_tyr_ligase

Graphical View of Domain Structure for InterPro Entry Q9Y4R7

ProtoNet protein and cluster: Q9Y4R7

1 Blocks protein family: IPB004344 Tubulin-tyrosine ligase

UniProtKB/Swiss-Prot: TTLL3_HUMAN, Q9Y4R7
Similarity: Contains 1 TTL domain


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: TTLL3_HUMAN, Q9Y4R7
Function: Monoglycylase which modifies alpha- and beta-tubulin, generating side chains of glycine on the gamma-carboxyl
groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin. Involved in the
side-chain initiation step of the glycylation reaction by adding a single glycine chain to generate monoglycine side
chains. Not involved in elongation step of the polyglycylation reaction

     Enzyme Number (IUBMB): EC 6.3.2.-1

     Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0004835tubulin-tyrosine ligase activity IEA--
GO:0005524ATP binding ----
GO:0070735protein-glycine ligase activity IDA19524510
GO:0070736protein-glycine ligase activity, initiating ISS--
     
TTLL3 for ontologies           About GeneDecksing


Animal Models:
   inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TTLL3 

miRNA
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SwitchGear 3'UTR luciferase reporter plasmidTTLL3 3' UTR sequence
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In Situ Assay
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TTLL3


(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TTLL3

3 Interacting proteins for TTLL3 (Q9Y4R72, 3) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
ARPC5LQ9BPX52, 3MINT-65307 I2D: score=1 
NELFCDQ8IXH72, 3MINT-64863 I2D: score=1 
RNF130Q86XS82, 3MINT-64838 I2D: score=1 
About this table

Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006464cellular protein modification process ----
GO:0018094protein polyglycylation IDA19524510
GO:0035082axoneme assembly ISS--
GO:0042384cilium assembly ISS--

TTLL3 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for TTLL3
Search CenterWatch for drugs/clinical trials and news about TTLL3 

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for TTLL3 gene (2 alternative transcripts): 
NM_015644.3  NM_001025930.3  

Unigene Cluster for TTLL3:

Tubulin tyrosine ligase-like family, member 3
Hs.726435  [show with all ESTs]
Unigene Representative Sequence: NR_037162
18/35 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 35):
ENST00000414814 ENST00000452597 ENST00000419081 ENST00000438596 ENST00000459758
ENST00000417065 ENST00000439814 ENST00000418745 ENST00000430718 ENST00000427220(uc003btf.4)
ENST00000426895 ENST00000426827 ENST00000431204 ENST00000422738 ENST00000430390
ENST00000483051(uc003bth.4 uc011atj.2) ENST00000310252 ENST00000496526(uc010hco.1)


miRNA
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3 QIAGEN miScript miRNA Assays for microRNAs that regulate TTLL3:
hsa-miR-3607-3p hsa-miR-3154 hsa-miR-513a-5p
SwitchGear 3'UTR luciferase reporter plasmidTTLL3 3' UTR sequence
Inhib. RNA
Products:
     
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QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TTLL3
Sirion Biotech Custom design and validation of potent shRNA sequences against TTLL3 
Clone
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  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TTLL3

Additional cDNA sequence: 

AF078842.1 AK023960.1 AK297289.1 AK315140.1 BC028169.1 BC113824.1 NR_037162.1 

24/34 DOTS entries (see all 34):

DT.120858267  DT.97862294  DT.120858167  DT.100816487  DT.95198356  DT.91761091  DT.91807281  DT.99974535 
DT.120858189  DT.92389612  DT.95209709  DT.97862293  DT.100816484  DT.120858275  DT.425915  DT.86790120 
DT.95148959  DT.120858163  DT.120858268  DT.97783976  DT.97861105  DT.100736995  DT.120858175  DT.120858220 

24/645 AceView cDNA sequences (see all 645):

CR609636 BM449575 BM845194 CA488436 BX357758 BM925196 BQ641790 CB135971 
CR614179 BI768100 CA313820 CR617543 BE243485 BQ424109 BU541432 AI864496 
BE859023 AW204341 AA996151 BM553110 CR608569 BQ069395 BX419672 BQ707699 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

TTLL3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GTGAAACCGT
TTLL3 Expression
About this image

TTLL3 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell 
Tissue Anatomical Compartment CellCategory (developmental path)
SomiteLumbar Vertebral BodySomite
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization

Genevestigator expression for TTLL3

SOURCE GeneReport for Unigene cluster: Hs.726435
    SABiosciences Custom PCR Arrays for TTLL3
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TTLL3

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for TTLL3 gene from 3/19 species (see all 19)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
lizard
(Anolis carolinensis)
Reptilia TTLL36
--
58(a)
1 → many
2(191298565-191314384)
zebrafish
(Danio rerio)
Actinopterygii ttll31 tubulin tyrosine ligase-like family, member 3 57.37(n)
51.44(a)
  724000  NM_001045305.1  NP_001038770.1 
fruit fly
(Drosophila melanogaster)
Insecta TTLL3A1 Tubulin tyrosine ligase-like 3A 49.97(n)
39.23(a)
  33947  NM_135225.1  NP_609069.1 


ENSEMBL Gene Tree for TTLL3 (if available)
TreeFam Gene Tree for TTLL3 (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for TTLL3 gene
TTLL102  TTLL42  TTLL12  TTLL52  TTLL112  TTLL92  TTLL72  TTLL62  
TTL2  TTLL82  TTLL22  TTLL132  ARPC4-TTLL32  
2 SIMAP similar genes for TTLL3 using alignment to 20 protein entries:     TTLL3_HUMAN (see all proteins):
ARPC4-TTLL3    TTLL8

TTLL3 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/494 NCBI SNPs in TTLL3 are shown (see all 494    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 3 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs344818711,2
C--9809145(+) TTTTT-/TGTCTC 1 -- int11Minor allele frequency- T:0.00NA 2
rs780937351,2
C--9849653(+) TGTGTA/GAAAGG 3 -- us2k1 int13Minor allele frequency- G:0.07CSA WA EA 239
rs1831640261,2
--9849658(+) AAAAGC/GTTCAC 3 -- int1 us2k10--------
rs759053971,2
--9849814(+) ATGGGG/TTGGAC 3 -- int1 us2k10--------
rs1492915691,2
--9849862(+) TGGAAC/TAGCTA 3 -- us2k1 int10--------
rs98796781,2
C--9849889(+) CCCCCT/CTTTTT 3 -- us2k1 int14Minor allele frequency- C:0.00WA NA CSA 7
rs612396461,2
C--9849890(+) CCCCCC/TTTTTT 3 -- us2k1 int10--------
rs1138071711,2
C--9849916(+) ACAGGA/G/TTCTCG 3 -- int1 us2k11WA 2
rs1870234091,2
--9849936(+) CCAGGC/GTGGAG 3 -- us2k1 int10--------
rs1919133441,2
--9850058(+) GCTAAC/TTTTTT 3 -- us2k1 int10--------

HapMap Linkage Disequilibrium report for TTLL3 (9849770 - 9896822 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for TTLL3
     1 CNV: 6156
     1 Indel: 59154

SABiosciences Cancer Mutation PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for TTLL3 gene, integrated from 9 sources (see all 11):
(articles sorted by number of sources associating them with TTLL3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Evolutionary divergence of enzymatic mechanisms for posttranslational polyglycylation. (PubMed id 19524510)1, 2 Rogowski K....Janke C. (2009)
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  3. Characterization of the human tubulin tyrosine ligase-like 1 gene (TTLL1) mapping to 22q13.1. (PubMed id 11054573)1, 3 Trichet V.... De Sario A. (2000)
  4. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
  5. The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)2 Sjoeblom T.... Velculescu V.E. (2006)
  6. The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (2006)
  7. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
  8. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)
  9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 26140 HGNC: 24483 AceView: ARPC4andTTLL3 Ensembl:ENSG00000214021 euGenes: HUgn26140
ECgene: TTLL3 H-InvDB: TTLL3

(According to HUGE)
About This Section
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TTLL3 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TTLL3 gene:
Search GeneIP for patents involving TTLL3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
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