Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TTL Gene

Aliases for TTL Gene

  • Tubulin Tyrosine Ligase 2 3
  • EC 6.3.2.25 4 63
  • Tubulin--Tyrosine Ligase 3
  • Tubulin-Tyrosine Ligase 3
  • 2410003M22Rik 3

External Ids for TTL Gene

Previous GeneCards Identifiers for TTL Gene

  • GC02P113146
  • GC02P113334
  • GC02P112956
  • GC02P113239
  • GC02P105693

Summaries for TTL Gene

Entrez Gene Summary for TTL Gene

  • TTL is a cytosolic enzyme involved in the posttranslational modification of alpha-tubulin (see MIM 602529). Alpha-tubulin within assembled microtubules is detyrosinated over time at the C terminus. After microtubule disassembly, TTL restores the tyrosine residues and consequently participates in a cycle of tubulin detyrosination and tyrosination (Erck et al., 2003 [PubMed 14571137]).[supplied by OMIM, Mar 2008]

GeneCards Summary for TTL Gene

TTL (Tubulin Tyrosine Ligase) is a Protein Coding gene. GO annotations related to this gene include tubulin-tyrosine ligase activity. An important paralog of this gene is TTLL8.

UniProtKB/Swiss-Prot for TTL Gene

  • Catalyzes the post-translational addition of a tyrosine to the C-terminal end of detyrosinated alpha-tubulin.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTL Gene

Genomics for TTL Gene

Regulatory Elements for TTL Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TTL Gene

Start:
112,482,154 bp from pter
End:
112,541,739 bp from pter
Size:
59,586 bases
Orientation:
Plus strand

Genomic View for TTL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTL Gene

Proteins for TTL Gene

  • Protein details for TTL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NG68-TTL_HUMAN
    Recommended name:
    Tubulin--tyrosine ligase
    Protein Accession:
    Q8NG68
    Secondary Accessions:
    • Q585T3
    • Q7Z302
    • Q8N426

    Protein attributes for TTL Gene

    Size:
    377 amino acids
    Molecular mass:
    43212 Da
    Cofactor:
    Name=K(+); Xref=ChEBI:CHEBI:29103;
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
    Quaternary structure:
    • Monomer.

neXtProt entry for TTL Gene

Proteomics data for TTL Gene at MOPED

Post-translational modifications for TTL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TTL Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for TTL Gene

Protein Domains for TTL Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for TTL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NG68

UniProtKB/Swiss-Prot:

TTL_HUMAN :
  • Q8NG68
Domain:
  • Contains 1 TTL domain.
Family:
  • Belongs to the tubulin--tyrosine ligase family.
genes like me logo Genes that share domains with TTL: view

No data available for Gene Families for TTL Gene

Function for TTL Gene

Molecular function for TTL Gene

GENATLAS Biochemistry: tetracycline transporter-like
UniProtKB/Swiss-Prot CatalyticActivity: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate
UniProtKB/Swiss-Prot Function: Catalyzes the post-translational addition of a tyrosine to the C-terminal end of detyrosinated alpha-tubulin.

Enzyme Numbers (IUBMB) for TTL Gene

Gene Ontology (GO) - Molecular Function for TTL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004835 tubulin-tyrosine ligase activity IEA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with TTL: view
genes like me logo Genes that share phenotypes with TTL: view

Animal Models for TTL Gene

MGI Knock Outs for TTL:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTL

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targeting and HOMER Transcription for TTL Gene

Localization for TTL Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TTL Gene COMPARTMENTS Subcellular localization image for TTL gene
Compartment Confidence
cytoskeleton 3
cytosol 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TTL Gene

Pathways for TTL Gene

SuperPathways for TTL Gene

No Data Available

Interacting Proteins for TTL Gene

Gene Ontology (GO) - Biological Process for TTL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000226 microtubule cytoskeleton organization IEA --
GO:0006464 cellular protein modification process IEA --
GO:0030516 regulation of axon extension IEA --
genes like me logo Genes that share ontologies with TTL: view

No data available for Pathways by source for TTL Gene

Compounds for TTL Gene

(6) HMDB Compounds for TTL Gene

Compound Synonyms Cas Number PubMed IDs
Adenosine triphosphate
  • 5'-(tetrahydrogen triphosphate) Adenosine
56-65-5
ADP
  • adenosindiphosphorsaeure
58-64-0
L-Tyrosine
  • (-)-a-Amino-p-hydroxyhydrocinnamate
60-18-4
Magnesium
  • Magnesium
7439-95-4
Phosphate
  • NFB Orthophosphate
14265-44-2

(2) Novoseek inferred chemical compound relationships for TTL Gene

Compound -log(P) Hits PubMed IDs
tyrosine 52.9 9
glutamate 27.4 1
genes like me logo Genes that share compounds with TTL: view

Transcripts for TTL Gene

Unigene Clusters for TTL Gene

Tubulin tyrosine ligase:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTL

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTL Gene

No ASD Table

Relevant External Links for TTL Gene

GeneLoc Exon Structure for
TTL
ECgene alternative splicing isoforms for
TTL

Expression for TTL Gene

mRNA expression in normal human tissues for TTL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TTL Gene

SOURCE GeneReport for Unigene cluster for TTL Gene Hs.358997

genes like me logo Genes that share expressions with TTL: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TTL Gene

Orthologs for TTL Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TTL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TTL 35
  • 98.59 (n)
  • 98.67 (a)
TTL 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TTL 35
  • 90.19 (n)
  • 94.16 (a)
TTL 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TTL 35
  • 91.69 (n)
  • 95.23 (a)
TTL 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ttl 35
  • 88.77 (n)
  • 95.23 (a)
Ttl 16
Ttl 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TTL 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TTL 36
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ttl 35
  • 88.86 (n)
  • 94.69 (a)
chicken
(Gallus gallus)
Aves TTL 35
  • 79.13 (n)
  • 88.86 (a)
TTL 36
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TTL 36
  • 86 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ttl 35
  • 74.2 (n)
  • 81.38 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.11411 35
ttl 35
  • 69.41 (n)
  • 78.42 (a)
ttl 36
  • 72 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PBY1 36
  • 9 (a)
OneToMany
PBY1 38
Species with no ortholog for TTL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TTL Gene

ENSEMBL:
Gene Tree for TTL (if available)
TreeFam:
Gene Tree for TTL (if available)

Paralogs for TTL Gene

Pseudogenes.org Pseudogenes for TTL Gene

genes like me logo Genes that share paralogs with TTL: view

Variants for TTL Gene

Sequence variations from dbSNP and Humsavar for TTL Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs7506 -- 112,532,124(+) TACTG(G/T)GATCG utr-variant-3-prime
rs11644 -- 112,531,455(+) GGACA(A/G)GTGAC utr-variant-3-prime
rs1127264 -- 112,531,011(+) TTGCC(C/T)AGGCT utr-variant-3-prime
rs1127296 -- 112,532,537(+) gcttg(A/G)ggctg utr-variant-3-prime, downstream-variant-500B
rs1465817 -- 112,528,915(+) AAAGA(A/T)GAGAT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for TTL Gene

Variant ID Type Subtype PubMed ID
nsv1013 CNV Insertion 18451855
nsv524578 CNV Loss 19592680
nsv874877 CNV Loss 21882294

Relevant External Links for TTL Gene

HapMap Linkage Disequilibrium report
TTL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTL Gene

Disorders for TTL Gene

(2) Novoseek inferred disease relationships for TTL Gene

Disease -log(P) Hits PubMed IDs
cancer 6.93 3
tumors 0 7

Relevant External Links for TTL

Genetic Association Database (GAD)
TTL
Human Genome Epidemiology (HuGE) Navigator
TTL
genes like me logo Genes that share disorders with TTL: view

No data available for UniProtKB/Swiss-Prot for TTL Gene

Publications for TTL Gene

  1. Cloning and genomic organization of the TTL gene on mouse chromosome 2 and human chromosome 2q13. (PMID: 14571137) Erck C. … Wehland J. (Cytogenet. Genome Res. 2003) 3 23
  2. Tubulin detyrosination is a frequent occurrence in breast cancers of poor prognosis. (PMID: 11431336) Mialhe A. … Job D. (Cancer Res. 2001) 2 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Evidence for genes on chromosome 2 contributing to alcohol dependence with conduct disorder and suicide attempts. (PMID: 20468071) Dick D.M. … Bierut L. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2010) 3 48
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for TTL Gene

Sources for TTL Gene

Back to Top

Content