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Aliases for TTC5 Gene

Aliases for TTC5 Gene

  • Tetratricopeptide Repeat Domain 5 2 3
  • Stress-Responsive Activator Of P300 3 4
  • TPR Repeat Protein 5 3 4
  • STRAP 3 4
  • Tetratricopeptide Repeat Protein 5 3

External Ids for TTC5 Gene

Summaries for TTC5 Gene

GeneCards Summary for TTC5 Gene

TTC5 (Tetratricopeptide Repeat Domain 5) is a Protein Coding gene. Among its related pathways are p53 pathway. GO annotations related to this gene include chromatin binding.

UniProtKB/Swiss-Prot for TTC5 Gene

  • Adapter protein involved in p53/TP53 response that acts by regulating and mediating the assembly of multi-protein complexes. Required to facilitate the interaction between JMY and p300/EP300 and increase p53/TP53-dependent transcription and apoptosis. Prevents p53/TP53 degradation by MDM2 (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC5 Gene

Genomics for TTC5 Gene

Genomic Location for TTC5 Gene

Start:
20,256,558 bp from pter
End:
20,305,994 bp from pter
Size:
49,437 bases
Orientation:
Minus strand

Genomic View for TTC5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTC5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC5 Gene

Regulatory Elements for TTC5 Gene

Proteins for TTC5 Gene

  • Protein details for TTC5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N0Z6-TTC5_HUMAN
    Recommended name:
    Tetratricopeptide repeat protein 5
    Protein Accession:
    Q8N0Z6
    Secondary Accessions:
    • A8MQ18
    • Q96HF9

    Protein attributes for TTC5 Gene

    Size:
    440 amino acids
    Molecular mass:
    48928 Da
    Quaternary structure:
    • Interacts with JMY and p300/EP300.

    Three dimensional structures from OCA and Proteopedia for TTC5 Gene

neXtProt entry for TTC5 Gene

Proteomics data for TTC5 Gene at MOPED

Post-translational modifications for TTC5 Gene

  • Phosphorylation at Ser-203 enhances protein stability, regulates nuclear accumulation and association with p300/EP300.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TTC5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TTC5 Gene

Domains for TTC5 Gene

Gene Families for TTC5 Gene

HGNC:
  • TTC :Tetratricopeptide (TTC) repeat domain containing

Protein Domains for TTC5 Gene

UniProtKB/Swiss-Prot:

TTC5_HUMAN
Similarity:
  • Contains 6 TPR repeats.:
    • Q8N0Z6
genes like me logo Genes that share domains with TTC5: view

Function for TTC5 Gene

Molecular function for TTC5 Gene

UniProtKB/Swiss-Prot Function: Adapter protein involved in p53/TP53 response that acts by regulating and mediating the assembly of multi-protein complexes. Required to facilitate the interaction between JMY and p300/EP300 and increase p53/TP53-dependent transcription and apoptosis. Prevents p53/TP53 degradation by MDM2 (By similarity).

Gene Ontology (GO) - Molecular Function for TTC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003682 chromatin binding IEA --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with TTC5: view

miRNA for TTC5 Gene

miRTarBase miRNAs that target TTC5

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TTC5 Gene

Localization for TTC5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TTC5 Gene

Nucleus. Cytoplasm. Note=Phosphorylation at Ser-203 results in nuclear localization, while unphosphorylated protein localizes to the cytoplasm. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TTC5 Gene COMPARTMENTS Subcellular localization image for TTC5 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for TTC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with TTC5: view

Pathways for TTC5 Gene

SuperPathways for TTC5 Gene

Superpath Contained pathways
1 p53 pathway
genes like me logo Genes that share pathways with TTC5: view

Pathways by source for TTC5 Gene

1 BioSystems pathway for TTC5 Gene

Gene Ontology (GO) - Biological Process for TTC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006281 DNA repair IEA --
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA --
genes like me logo Genes that share ontologies with TTC5: view

Transcripts for TTC5 Gene

Unigene Clusters for TTC5 Gene

Tetratricopeptide repeat domain 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTC5 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1:
SP2: -
SP3: - - -

Relevant External Links for TTC5 Gene

GeneLoc Exon Structure for
TTC5
ECgene alternative splicing isoforms for
TTC5

Expression for TTC5 Gene

mRNA expression in normal human tissues for TTC5 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TTC5 Gene

SOURCE GeneReport for Unigene cluster for TTC5 Gene Hs.98553

genes like me logo Genes that share expressions with TTC5: view

Orthologs for TTC5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TTC5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TTC5 36
  • 99.77 (n)
  • 99.55 (a)
TTC5 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TTC5 36
  • 91.36 (n)
  • 92.73 (a)
TTC5 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TTC5 36
  • 85.19 (n)
  • 89.75 (a)
TTC5 37
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ttc5 36
  • 86.59 (n)
  • 90.45 (a)
Ttc5 16
Ttc5 37
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TTC5 37
  • 80 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ttc5 36
  • 86.36 (n)
  • 90.23 (a)
lizard
(Anolis carolinensis)
Reptilia TTC5 37
  • 72 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.11459 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.18743 36
ttc5 36
  • 66.28 (n)
  • 67.84 (a)
zebrafish
(Danio rerio)
Actinopterygii ttc5 36
  • 60.71 (n)
  • 59.16 (a)
ttc5 37
  • 55 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y37E3.1 37
  • 25 (a)
OneToOne
rice
(Oryza sativa)
Liliopsida Os01g0506200 36
  • 44.73 (n)
  • 36.5 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 40 (a)
OneToOne
Species with no ortholog for TTC5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TTC5 Gene

ENSEMBL:
Gene Tree for TTC5 (if available)
TreeFam:
Gene Tree for TTC5 (if available)

Paralogs for TTC5 Gene

Selected SIMAP similar genes for TTC5 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for TTC5 Gene

genes like me logo Genes that share paralogs with TTC5: view

No data available for Paralogs for TTC5 Gene

Variants for TTC5 Gene

Sequence variations from dbSNP and Humsavar for TTC5 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs945459 -- 20,299,547(+) CCTTT(C/T)TAAGT intron-variant
rs998040 -- 20,294,215(-) TTCTC(C/T)TTATA intron-variant
rs1000608 -- 20,294,847(+) CACTC(A/C)ATAAA intron-variant
rs1953550 -- 20,292,714(+) GAATA(A/G)CTTTT intron-variant
rs1953551 -- 20,295,287(+) TAAAA(C/T)GGGGG intron-variant

Relevant External Links for TTC5 Gene

HapMap Linkage Disequilibrium report
TTC5

No data available for Structural Variations from Database of Genomic Variants (DGV) for TTC5 Gene

Disorders for TTC5 Gene

No disorders were found for TTC5 Gene.

No data available for UniProtKB/Swiss-Prot for TTC5 Gene

Publications for TTC5 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. A TPR motif cofactor contributes to p300 activity in the p53 response. (PMID: 11511361) Demonacos C. … La Thangue N.B. (Mol. Cell 2001) 2 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for TTC5 Gene

  • Addgene plasmids for TTC5

Sources for TTC5 Gene

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