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Aliases for TTC4P1 Gene

Aliases for TTC4P1 Gene

  • Tetratricopeptide Repeat Domain 4 Pseudogene 1 2 3 5
  • Tetratricopeptide Repeat Domain 4, Pseudogene 2 3
  • TTC4P 3

External Ids for TTC4P1 Gene

Previous HGNC Symbols for TTC4P1 Gene

  • TTC4P

Previous GeneCards Identifiers for TTC4P1 Gene

  • GC07M046040
  • GC07M045924

Summaries for TTC4P1 Gene

GeneCards Summary for TTC4P1 Gene

TTC4P1 (Tetratricopeptide Repeat Domain 4 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC4P1 Gene

Genomics for TTC4P1 Gene

Regulatory Elements for TTC4P1 Gene

Enhancers for TTC4P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G046032 1 FANTOM5 ENCODE 28.6 -33.1 -33084 3.5 NFIB MTA2 JUNB DPF2 TBX21 RARA NR2F2 FOXA1 GATA3 CTBP1 TTC4P1 RNU7-76P ENSG00000237471 ENSG00000229628 GC07M045993 PIR44423
GH07G045976 1.4 Ensembl ENCODE dbSUPER 19.2 +21.6 21647 4.5 PKNOX1 FOXA2 SIN3A BMI1 BRCA1 RFX5 EGR1 RCOR1 RELB FOS TTC4P1 RNU7-76P ENSG00000229628
GH07G046015 0.9 Ensembl ENCODE 27.8 -14.8 -14783 1.1 TFAP4 TEAD4 RBBP5 RAD21 RARA NR2F2 SMARCA4 POLR2A KDM1A TTC4P1 RNU7-76P ENSG00000237471 LOC105375264
GH07G045918 1.4 Ensembl ENCODE dbSUPER 15.2 +79.1 79064 6.8 SIN3A BMI1 RAD21 RFX5 GATA2 ZNF143 RCOR1 FOS DEK EGR2 ENSG00000237471 TTC4P1 IGFBP1 RNU7-76P ENSG00000229628 IGFBP3 GC07P046243
GH07G045972 1.2 ENCODE dbSUPER 16.6 +26.9 26933 2.4 FOXA2 MLX ARID4B ZNF48 SP5 PPARG KAT8 SSRP1 MIER3 SMARCA4 TTC4P1 ENSG00000237471 GC07M045976
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TTC4P1 on UCSC Golden Path with GeneCards custom track

Promoters for TTC4P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000211992 77 199

Genomic Location for TTC4P1 Gene

Chromosome:
7
Start:
45,999,621 bp from pter
End:
46,000,778 bp from pter
Size:
1,158 bases
Orientation:
Minus strand

Genomic View for TTC4P1 Gene

Genes around TTC4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTC4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC4P1 Gene

Proteins for TTC4P1 Gene

Post-translational modifications for TTC4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC4P1 Gene

Domains & Families for TTC4P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC4P1 Gene

Function for TTC4P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC4P1 Gene

Localization for TTC4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTC4P1 Gene

Pathways & Interactions for TTC4P1 Gene

SuperPathways for TTC4P1 Gene

No Data Available

Interacting Proteins for TTC4P1 Gene

Gene Ontology (GO) - Biological Process for TTC4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTC4P1 Gene

Drugs & Compounds for TTC4P1 Gene

No Compound Related Data Available

Transcripts for TTC4P1 Gene

mRNA/cDNA for TTC4P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTC4P1 Gene

No ASD Table

Relevant External Links for TTC4P1 Gene

GeneLoc Exon Structure for
TTC4P1
ECgene alternative splicing isoforms for
TTC4P1

Expression for TTC4P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTC4P1 Gene

mRNA differential expression in normal tissues according to GTEx for TTC4P1 Gene

This gene is overexpressed in Muscle - Skeletal (x12.6) and Spleen (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of TTC4P1 Gene:

TTC4P1
genes like me logo Genes that share expression patterns with TTC4P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTC4P1 Gene

Orthologs for TTC4P1 Gene

Evolution for TTC4P1 Gene

ENSEMBL:
Gene Tree for TTC4P1 (if available)
TreeFam:
Gene Tree for TTC4P1 (if available)

No data available for Orthologs for TTC4P1 Gene

Paralogs for TTC4P1 Gene

No data available for Paralogs for TTC4P1 Gene

Variants for TTC4P1 Gene

Relevant External Links for TTC4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TTC4P1 Gene

Disorders for TTC4P1 Gene

Relevant External Links for TTC4P1

Genetic Association Database (GAD)
TTC4P1

No disorders were found for TTC4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC4P1 Gene

Publications for TTC4P1 Gene

  1. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin E.J. … Vasan R.S. (BMC Med. Genet. 2007) 3 46 64
  2. Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis. (PMID: 22310353) Man M. … Garcia J.G. (Pharmacogenomics J. 2013) 46 64
  3. GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease. (PMID: 21658281) Aouizerat B.E. … Tseng Z.H. (BMC Cardiovasc Disord 2011) 46 64
  4. A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3. (PMID: 21216879) Kaplan R.C. … Wallaschofski H. (Hum. Mol. Genet. 2011) 46 64
  5. Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction. (PMID: 21076409) Sotoodehnia N. … Arking D.E. (Nat. Genet. 2010) 46 64

Products for TTC4P1 Gene

Sources for TTC4P1 Gene

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