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Aliases for TTC3P1 Gene

Aliases for TTC3P1 Gene

  • Tetratricopeptide Repeat Domain 3 Pseudogene 1 2 3
  • Tetratricopeptide Repeat Domain 3-Like 2
  • RNF105L 3
  • TTC3L 3

External Ids for TTC3P1 Gene

Previous HGNC Symbols for TTC3P1 Gene

  • TTC3L

Previous GeneCards Identifiers for TTC3P1 Gene

  • GC0XM074961

Summaries for TTC3P1 Gene

GeneCards Summary for TTC3P1 Gene

TTC3P1 (Tetratricopeptide Repeat Domain 3 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC3P1 Gene

Genomics for TTC3P1 Gene

Genomic Location for TTC3P1 Gene

Start:
75,740,538 bp from pter
End:
75,746,911 bp from pter
Size:
6,374 bases
Orientation:
Minus strand

Genomic View for TTC3P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTC3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC3P1 Gene

No data available for Regulatory Elements for TTC3P1 Gene

Proteins for TTC3P1 Gene

Post-translational modifications for TTC3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC3P1 Gene

Domains for TTC3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC3P1 Gene

Function for TTC3P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTC3P1 Gene

Localization for TTC3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTC3P1 Gene

Pathways for TTC3P1 Gene

SuperPathways for TTC3P1 Gene

No Data Available

Interacting Proteins for TTC3P1 Gene

Gene Ontology (GO) - Biological Process for TTC3P1 Gene

None

No data available for Pathways by source for TTC3P1 Gene

Transcripts for TTC3P1 Gene

mRNA/cDNA for TTC3P1 Gene

(6) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTC3P1 Gene

Tetratricopeptide repeat domain 3 pseudogene 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTC3P1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTC3P1 Gene

No ASD Table

Relevant External Links for TTC3P1 Gene

GeneLoc Exon Structure for
TTC3P1
ECgene alternative splicing isoforms for
TTC3P1

Expression for TTC3P1 Gene

mRNA expression in normal human tissues for TTC3P1 Gene

SOURCE GeneReport for Unigene cluster for TTC3P1 Gene Hs.567832

genes like me logo Genes that share expressions with TTC3P1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TTC3P1 Gene

Orthologs for TTC3P1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TTC3P1 Gene

Organism Taxonomy Gene Similarity Type Details
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.18401 35
Species with no ortholog for TTC3P1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TTC3P1 Gene

ENSEMBL:
Gene Tree for TTC3P1 (if available)
TreeFam:
Gene Tree for TTC3P1 (if available)

Paralogs for TTC3P1 Gene

No data available for Paralogs for TTC3P1 Gene

Variants for TTC3P1 Gene

Sequence variations from dbSNP and Humsavar for TTC3P1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1053833 -- 75,743,533(-) TGAGT(A/C)ACAAG upstream-variant-2KB
rs1053838 -- 75,743,517(-) CTCTG(A/C)AGAAT upstream-variant-2KB
rs1133008 -- 75,743,891(-) CAAGA(C/T)AGTGG upstream-variant-2KB
rs1133010 -- 75,743,885(-) AGTGG(C/T)GAAGC upstream-variant-2KB
rs1133011 -- 75,743,867(-) AGTTC(A/T)ACCAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTC3P1 Gene

Variant ID Type Subtype PubMed ID
esv2752334 CNV Gain 17911159

Relevant External Links for TTC3P1 Gene

HapMap Linkage Disequilibrium report
TTC3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTC3P1 Gene

Disorders for TTC3P1 Gene

No disorders were found for TTC3P1 Gene.

No data available for UniProtKB/Swiss-Prot for TTC3P1 Gene

Publications for TTC3P1 Gene

No publications were found for TTC3P1 Gene.

Products for TTC3P1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTC3P1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TTC3P1
    • Block miRNA regulation of TTC3P1 using miScript Target Protectors

    Sources for TTC3P1 Gene

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