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TTC32 Gene

protein-coding   GIFtS: 45
GCID: GC02M020096

Tetratricopeptide Repeat Domain 32

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Tetratricopeptide Repeat Domain 321 2
TPR Repeat Protein 322 3
Tetratricopeptide Repeat Protein 322

External Ids:    HGNC: 329541   Entrez Gene: 1305022   Ensembl: ENSG000001838917   UniProtKB: Q5I0X73   

Export aliases for TTC32 gene to outside databases

Previous GC identifers: GC02M019959 GC02M019853


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TTC32 Gene:
TTC32 (tetratricopeptide repeat domain 32) is a protein-coding gene. GO annotations related to this gene include identical protein binding.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000002.11  NC_018913.2  NT_022184.16  
Regulatory elements:
   Regulatory transcription factor binding sites in the TTC32 gene promoter:
         MEF-2A   C/EBPbeta   HTF   c-Myb   aMEF-2   CUTL1   C/EBPalpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTTC32 promoter sequence
   Search Chromatin IP Primers for TTC32

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TTC32


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p24.1   Ensembl cytogenetic band:  2p24.1   HGNC cytogenetic band: 2p24.1

TTC32 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TTC32 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M020096:  view genomic region     (about GC identifiers)

Start:
20,096,404 bp from pter      End:
20,101,747 bp from pter
Size:
5,344 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: TTC32_HUMAN, Q5I0X7 (See protein sequence)
Recommended Name: Tetratricopeptide repeat protein 32  
Size: 151 amino acids; 17296 Da

Explore the universe of human proteins at neXtProt for TTC32: NX_Q5I0X7

Explore proteomics data for TTC32 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See TTC32 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001008238.1  
    ENSEMBL proteins: 
     ENSP00000385708   ENSP00000333018   ENSP00000412874  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    TTC: Tetratricopeptide (TTC) repeat domain containing

    4 InterPro protein domains:
     IPR011990 TPR-like_helical
     IPR011717 TPR-4
     IPR013026 TPR-contain_dom
     IPR019734 TPR_repeat

    Graphical View of Domain Structure for InterPro Entry Q5I0X7

    ProtoNet protein and cluster: Q5I0X7

    UniProtKB/Swiss-Prot: TTC32_HUMAN, Q5I0X7
    Similarity: Contains 3 TPR repeats


    Find genes that share domains with TTC32           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
    GO:0042802identical protein binding IEA--
         
    Find genes that share ontologies with TTC32           About GenesLikeMe


    Animal Models:
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    hsa-miR-551b*
    SwitchGear 3'UTR luciferase reporter plasmidTTC32 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus2
    extracellular1
    mitochondrion1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TTC32
    Interactions:

        Search GeneGlobe Interaction Network for TTC32

    STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

    Selected Interacting proteins for TTC32 (Q5I0X73 ENSP000003330184) via UniProtKB, MINT, STRING, and/or I2D (see all 8)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MYOGP151733I2D: score=1 
    UBCENSP000003448184STRING: ENSP00000344818
    RUVBL1ENSP000003182974STRING: ENSP00000318297
    RUVBL2ENSP000002214134STRING: ENSP00000221413
    CLTCENSP000002691224STRING: ENSP00000269122
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for TTC32



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for TTC32 gene: 
    NM_001008237.1  

    Unigene Cluster for TTC32:

    Tetratricopeptide repeat domain 32
    Hs.591547  [show with all ESTs]
    Unigene Representative Sequence: BC050088
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000402414 ENST00000333610(uc002rdg.3) ENST00000495698 ENST00000431392

    miRNA
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    1 qRT-PCR Assays for microRNA that regulate TTC32:
    hsa-miR-551b*
    SwitchGear 3'UTR luciferase reporter plasmidTTC32 3' UTR sequence
    Inhib. RNA
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    Additional mRNA sequence: 

    BC050088.1 BC057850.1 BC070381.1 

    5 DOTS entries:

    DT.92420878  DT.99986560  DT.448381  DT.92420877  DT.121645424 

    Selected AceView cDNA sequences (see all 76):

    C00008 CA450143 AW293658 BE465877 AI492364 AI016706 AI479584 BG116043 
    AI253103 AW204623 R85609 AI693068 BE501080 AW271392 AA576733 BU617722 
    BC050088 BX951044 AI492498 AI373045 BC070381 BE465893 AW519289 BG149801 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for TTC32    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c
    SP1:              -     -     -     -                                 
    SP2:                          -     -                                 
    SP3:                                -                                 
    SP4:              -     -     -                                       
    SP5:                                                                  


    ECgene alternative splicing isoforms for TTC32

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    TTC32 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ATCCTTACAT
    TTC32 Expression
    About this image

    TTC32 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    TTC32 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.591547
        Custom PCR Arrays for TTC32
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for TTC32 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ttc321 , 5 tetratricopeptide repeat domain 321, 5 82.85(n)1
    80.43(a)1
      12 (3.98 cM)5
    755161  NM_029321.21  NP_083597.11 
     90299975 
    chicken
    (Gallus gallus)
    Aves TTC321 tetratricopeptide repeat domain 32 63.98(n)
    66.13(a)
      769943  XM_004935785.1  XP_004935842.1 
    lizard
    (Anolis carolinensis)
    Reptilia TTC326
    tetratricopeptide repeat domain 32
    63(a)
    1 ↔ 1
    1(154731307-154737823)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.338152 Xenopus laevis transcribed sequence with weak similarity more 76.31(n)    AW636824.1 
    zebrafish
    (Danio rerio)
    Actinopterygii ttc321 tetratricopeptide repeat domain 32 63.25(n)
    60.63(a)
      100004012  NM_001025520.1  NP_001020691.1 


    ENSEMBL Gene Tree for TTC32 (if available)
    TreeFam Gene Tree for TTC32 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for TTC32 (see all 167)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1394536651,2
    C--20096096(+) GAACT-/GAGA  
            
    GAAAC
    1 -- int10--------
    rs1392033801,2
    C--20096509(+) CCACAC/TATTCC 1 -- int10--------
    rs1901520441,2
    --20096589(+) AACCCA/GTTCAA 1 -- ut310--------
    rs2021816601,2
    --20096761(+) TTTTTA/GCAACA 2 A V mis10--------
    rs1471169331,2
    C--20096767(+) CAACAT/CTTCTT 2 /N /S mis11Minor allele frequency- C:0.00NA 3968
    rs762629171,2
    C--20096779(+) TTTGTT/CTTTCT 2 /K /R mis11Minor allele frequency- C:0.00EU 1159
    rs132571,2
    C,F--20096799(+) AGAATA/GGTCTG 2 T syn13Minor allele frequency- G:0.00MN WA NA 4474
    rs1482956961,2
    F--20096818(+) TCAAAG/ATAGCA 2 /T /I mis11Minor allele frequency- A:0.00NA 4296
    rs617405651,2
    C,F--20096846(+) TAAGTC/GTAAGA 2 H D mis13Minor allele frequency- G:0.04NS WA NA 4468
    rs1150567721,2
    C,F--20096899(+) CAGAAC/TCCAAA 1 -- int11Minor allele frequency- T:0.05WA 118

    HapMap Linkage Disequilibrium report for TTC32 (20096404 - 20101747 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 6 variations for TTC32:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv29979CNV Loss17803354
    nsv521619CNV Loss19592680
    nsv522640CNV Loss19592680
    dgv4067n71CNV Gain21882294
    nsv873715CNV Gain21882294
    nsv873714CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing TTC32
    DNA2.0 Custom Variant and Variant Library Synthesis for TTC32

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for TTC32 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with TTC32)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PubMed id 23824909)1 Chen Y....Ge F. (amp 2013)
    3. Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease. (PubMed id 22751097)1 Lu X....Gu D. (Nat. Genet. 2012)
    4. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 130502 HGNC: 32954 AceView: LOC130502 Ensembl:ENSG00000183891 euGenes: HUgn130502
    ECgene: TTC32 H-InvDB: TTC32

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for TTC32 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for TTC32 gene:
    Search GeneIP for patents involving TTC32

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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