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Aliases for TTC31 Gene

Aliases for TTC31 Gene

  • Tetratricopeptide Repeat Domain 31 2 3
  • TPR Repeat Protein 31 4

External Ids for TTC31 Gene

Previous GeneCards Identifiers for TTC31 Gene

  • GC02P074564
  • GC02P074710
  • GC02P074446

Summaries for TTC31 Gene

GeneCards Summary for TTC31 Gene

TTC31 (Tetratricopeptide Repeat Domain 31) is a Protein Coding gene. An important paralog of this gene is STIP1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC31 Gene

Genomics for TTC31 Gene

Regulatory Elements for TTC31 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TTC31 Gene

Start:
74,483,073 bp from pter
End:
74,494,886 bp from pter
Size:
11,814 bases
Orientation:
Plus strand

Genomic View for TTC31 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTC31 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC31 Gene

Proteins for TTC31 Gene

  • Protein details for TTC31 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q49AM3-TTC31_HUMAN
    Recommended name:
    Tetratricopeptide repeat protein 31
    Protein Accession:
    Q49AM3
    Secondary Accessions:
    • Q4KN40
    • Q53FD4
    • Q9H9F7

    Protein attributes for TTC31 Gene

    Size:
    519 amino acids
    Molecular mass:
    57105 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TTC31 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TTC31 Gene

Proteomics data for TTC31 Gene at MOPED

Post-translational modifications for TTC31 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TTC31 Gene

No data available for DME Specific Peptides for TTC31 Gene

Domains for TTC31 Gene

Gene Families for TTC31 Gene

HGNC:
  • TTC :Tetratricopeptide (TTC) repeat domain containing

Protein Domains for TTC31 Gene

Suggested Antigen Peptide Sequences for TTC31 Gene

Graphical View of Domain Structure for InterPro Entry

Q49AM3

UniProtKB/Swiss-Prot:

TTC31_HUMAN :
  • Q49AM3
Similarity:
  • Contains 3 TPR repeats.
genes like me logo Genes that share domains with TTC31: view

Function for TTC31 Gene

Gene Ontology (GO) - Molecular Function for TTC31 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TTC31: view

Phenotypes for TTC31 Gene

GenomeRNAi human phenotypes for TTC31:
genes like me logo Genes that share phenotypes with TTC31: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTC31 Gene

Localization for TTC31 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TTC31 Gene COMPARTMENTS Subcellular localization image for TTC31 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TTC31 Gene

Pathways for TTC31 Gene

SuperPathways for TTC31 Gene

No Data Available

Interacting Proteins for TTC31 Gene

Gene Ontology (GO) - Biological Process for TTC31 Gene

None

No data available for Pathways by source for TTC31 Gene

Transcripts for TTC31 Gene

Unigene Clusters for TTC31 Gene

Tetratricopeptide repeat domain 31:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TTC31

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTC31 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b · 13c · 13d ^
SP1: - - - -
SP2: - - -
SP3: - - -
SP4: - - -
SP5: -
SP6: - - - -
SP7: - - -
SP8: - -
SP9: - - -
SP10: -
SP11: - - - -
SP12: - - -
SP13: - - - - - - - - - - - - - - - -
SP14:
SP15:
SP16:

ExUns: 14a · 14b · 14c · 14d · 14e
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:

Relevant External Links for TTC31 Gene

GeneLoc Exon Structure for
TTC31
ECgene alternative splicing isoforms for
TTC31

Expression for TTC31 Gene

mRNA expression in normal human tissues for TTC31 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TTC31 Gene

SOURCE GeneReport for Unigene cluster for TTC31 Gene Hs.557709

genes like me logo Genes that share expressions with TTC31: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TTC31 Gene

Orthologs for TTC31 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TTC31 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TTC31 35
  • 99.49 (n)
  • 98.84 (a)
TTC31 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TTC31 35
  • 82 (n)
  • 77.71 (a)
TTC31 36
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TTC31 36
  • 56 (a)
OneToOne
chicken
(Gallus gallus)
Aves TTC31 36
  • 21 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TTC31 36
  • 39 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii TTC31 36
  • 19 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes STI1 36
  • 10 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 14 (a)
OneToOne
Species with no ortholog for TTC31:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TTC31 Gene

ENSEMBL:
Gene Tree for TTC31 (if available)
TreeFam:
Gene Tree for TTC31 (if available)

Paralogs for TTC31 Gene

Paralogs for TTC31 Gene

Selected SIMAP similar genes for TTC31 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with TTC31: view

Variants for TTC31 Gene

Sequence variations from dbSNP and Humsavar for TTC31 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1045583 -- 74,494,390(+) GGGTC(A/C)CCTTG utr-variant-3-prime, nc-transcript-variant
rs1128487 -- 74,494,413(+) aacat(C/T)taagc utr-variant-3-prime, nc-transcript-variant
rs2276691 -- 74,490,396(+) CCTCT(A/G)CCTCT missense, reference, nc-transcript-variant, utr-variant-5-prime
rs2301984 -- 74,493,928(-) GCAGC(C/T)TGGGC utr-variant-3-prime, nc-transcript-variant
rs3755445 -- 74,495,043(+) ctgca(A/G)tgacc downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TTC31 Gene

Variant ID Type Subtype PubMed ID
dgv1199e1 CNV Complex 17122850
nsv458185 CNV Loss 19166990
nsv515851 CNV Loss 19592680
dgv4166n71 CNV Loss 21882294

Relevant External Links for TTC31 Gene

HapMap Linkage Disequilibrium report
TTC31

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTC31 Gene

Disorders for TTC31 Gene

No disorders were found for TTC31 Gene.

No data available for UniProtKB/Swiss-Prot for TTC31 Gene

Publications for TTC31 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 3
  5. [Novel bidirectional promoter from human genome]. (PMID: 21790010) Orekhova A.S. … Rubtsov P.M. (Mol. Biol. (Mosk.) 2011) 3

Products for TTC31 Gene

Sources for TTC31 Gene

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