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Aliases for TTC3-AS1 Gene

Subcategory (RNA class) for TTC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTC3-AS1 Gene

  • TTC3 Antisense RNA 1 2 3 5
  • TTC3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TTC3-AS1 Gene

Previous GeneCards Identifiers for TTC3-AS1 Gene

  • GC21M038560

Summaries for TTC3-AS1 Gene

GeneCards Summary for TTC3-AS1 Gene

TTC3-AS1 (TTC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC3-AS1 Gene

Genomics for TTC3-AS1 Gene

Regulatory Elements for TTC3-AS1 Gene

Enhancers for TTC3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G037071 1.2 ENCODE 20.1 +121.5 121485 4.2 CREB3L1 AGO1 DMAP1 YY1 ZNF416 ZNF548 ZNF263 SP3 NFYC ZNF610 TTC3 PIGP SETD4 ENSG00000242553 MORC3 TTC3-AS1 LOC100133286 LOC105372795
GH21G037256 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -63.6 -63593 4.1 HDGF PKNOX1 FOXA2 ZFP64 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 TTC3 PIGP TTC3-AS1 DYRK1A ENSG00000272948 ENSG00000242553
GH21G036697 1.6 FANTOM5 ENCODE dbSUPER 10.1 +493.5 493506 6.9 HDGF SIN3A GLI4 ZNF2 GLIS2 ZNF263 SP3 SP5 YY2 REST SETD4 ENSG00000242553 SIM2 TTC3 RIMKLBP1 MORC3 TTC3-AS1 ENSG00000224269
GH21G037250 1.1 Ensembl ENCODE 11.9 -56.6 -56648 1.5 ZSCAN4 INSM2 GLI4 ZNF195 RAD21 CHAMP1 ZNF121 ZNF23 EGR1 RCOR1 ENSG00000242553 TTC3 TTC3-AS1 ENSG00000270116 ENSG00000272948
GH21G038138 1 ENCODE 11.7 -945.4 -945429 2.8 PKNOX1 FOXA2 SIN3A GLI4 FEZF1 YBX1 BRCA1 ZBTB7B YY1 ZNF207 ENSG00000242553 TTC3-AS1 KCNJ15 DSCR8
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TTC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TTC3-AS1 Gene

Chromosome:
21
Start:
37,187,612 bp from pter
End:
37,194,628 bp from pter
Size:
7,017 bases
Orientation:
Minus strand

Genomic View for TTC3-AS1 Gene

Genes around TTC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC3-AS1 Gene

Proteins for TTC3-AS1 Gene

Post-translational modifications for TTC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC3-AS1 Gene

Domains & Families for TTC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC3-AS1 Gene

Function for TTC3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC3-AS1 Gene

Localization for TTC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTC3-AS1 Gene

Pathways & Interactions for TTC3-AS1 Gene

SuperPathways for TTC3-AS1 Gene

No Data Available

Interacting Proteins for TTC3-AS1 Gene

Gene Ontology (GO) - Biological Process for TTC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTC3-AS1 Gene

Transcripts for TTC3-AS1 Gene

mRNA/cDNA for TTC3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTC3-AS1 Gene

No ASD Table

Relevant External Links for TTC3-AS1 Gene

GeneLoc Exon Structure for
TTC3-AS1
ECgene alternative splicing isoforms for
TTC3-AS1

Expression for TTC3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTC3-AS1 Gene

genes like me logo Genes that share expression patterns with TTC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTC3-AS1 Gene

Orthologs for TTC3-AS1 Gene

Evolution for TTC3-AS1 Gene

ENSEMBL:
Gene Tree for TTC3-AS1 (if available)
TreeFam:
Gene Tree for TTC3-AS1 (if available)

No data available for Orthologs for TTC3-AS1 Gene

Paralogs for TTC3-AS1 Gene

No data available for Paralogs for TTC3-AS1 Gene

Variants for TTC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for TTC3-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000442252 -- 37,196,379(+) TTATA(A/G)GCATG intron-variant, upstream-variant-2KB
rs1000563619 -- 37,196,412(+) TTGTA(A/T)TTTTA intron-variant, upstream-variant-2KB
rs1000780568 -- 37,195,050(+) ACTAG(C/G)GGAAG intron-variant, upstream-variant-2KB
rs1000811730 -- 37,195,480(+) TCCTA(C/T)TCTTG intron-variant, upstream-variant-2KB
rs1001268408 -- 37,196,300(+) GGCAC(A/G)GTCTC intron-variant, upstream-variant-2KB

Relevant External Links for TTC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TTC3-AS1 Gene

Disorders for TTC3-AS1 Gene

Relevant External Links for TTC3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTC3-AS1

No disorders were found for TTC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC3-AS1 Gene

Publications for TTC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TTC3-AS1 Gene

Sources for TTC3-AS1 Gene

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