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Aliases for TTC3-AS1 Gene

Subcategory (RNA class) for TTC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TTC3-AS1 Gene

  • TTC3 Antisense RNA 1 2 3 5
  • TTC3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TTC3-AS1 Gene

Previous GeneCards Identifiers for TTC3-AS1 Gene

  • GC21M038560

Summaries for TTC3-AS1 Gene

GeneCards Summary for TTC3-AS1 Gene

TTC3-AS1 (TTC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC3-AS1 Gene

Genomics for TTC3-AS1 Gene

Regulatory Elements for TTC3-AS1 Gene

Enhancers for TTC3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F037562 1.9 FANTOM5 Ensembl ENCODE 13.2 -370.6 -370639 5.6 HDGF PKNOX1 ARNT CREB3L1 SIN3A ARID4B ZNF2 YY1 CBX5 ZNF143 ENSG00000242553 KCNJ6-AS1 TTC3-AS1 ENSG00000224790 DYRK1A TTC3 LOC105372798 GC21M037650
GH21F037256 1.7 FANTOM5 Ensembl ENCODE 10.2 -63.6 -63593 4.1 HDGF PKNOX1 ATF1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 GLI4 DMAP1 TTC3 PIGP ENSG00000224790 TTC3-AS1 DYRK1A ENSG00000272948 ENSG00000242553
GH21F037434 1.2 Ensembl ENCODE 13.2 -241.0 -240973 3.2 HDGF ATF1 PKNOX1 FEZF1 ZNF2 YY1 GLIS2 FOS ZNF263 SP3 ENSG00000242553 TTC3-AS1 TTC3 GC21M037455 GC21P037381
GH21F036286 1.2 Ensembl ENCODE 13.1 +906.1 906149 4.1 PKNOX1 FEZF1 ZNF2 ZNF121 ZNF302 JUNB ZNF488 TBX21 SMARCA4 ZNF610 ENSG00000242553 RIMKLBP1 SETD4 MORC3 TTC3-AS1 ENSG00000224790 ENSG00000228107 DOPEY2 SRSF9P1 GC21P036251
GH21F036697 1.3 FANTOM5 ENCODE 10.1 +493.5 493506 6.9 SIN3A GLI4 ZNF2 GLIS2 ZNF263 SP3 YY2 SP5 REST TSHZ1 SIM2 MRPL20P1 RN7SL678P LOC105369295 ENSG00000230794 ENSG00000242553 SETD4 PPP1R2P2 MORC3 ENSG00000224790
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TTC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TTC3-AS1 Gene

37,187,612 bp from pter
37,194,628 bp from pter
7,017 bases
Minus strand

Genomic View for TTC3-AS1 Gene

Genes around TTC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC3-AS1 Gene

Proteins for TTC3-AS1 Gene

Post-translational modifications for TTC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC3-AS1 Gene

Domains & Families for TTC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC3-AS1 Gene

Function for TTC3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC3-AS1 Gene

Localization for TTC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTC3-AS1 Gene

Pathways & Interactions for TTC3-AS1 Gene

SuperPathways for TTC3-AS1 Gene

No Data Available

Interacting Proteins for TTC3-AS1 Gene

Gene Ontology (GO) - Biological Process for TTC3-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TTC3-AS1 Gene

Transcripts for TTC3-AS1 Gene

mRNA/cDNA for TTC3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTC3-AS1 Gene

No ASD Table

Relevant External Links for TTC3-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TTC3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TTC3-AS1 Gene

genes like me logo Genes that share expression patterns with TTC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TTC3-AS1 Gene

Orthologs for TTC3-AS1 Gene

Evolution for TTC3-AS1 Gene

Gene Tree for TTC3-AS1 (if available)
Gene Tree for TTC3-AS1 (if available)

No data available for Orthologs for TTC3-AS1 Gene

Paralogs for TTC3-AS1 Gene

No data available for Paralogs for TTC3-AS1 Gene

Variants for TTC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for TTC3-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1053966 -- 37,195,708(+) CAGGC(C/G)ACGAT upstream-variant-2KB, reference, missense
rs10595332 -- 37,189,560(+) TGTTT(-/GTTT)TTGAG intron-variant
rs111578886 -- 37,190,755(+) CTCTG(A/T)TTTTT intron-variant
rs111996998 -- 37,188,165(+) ATTCT(C/G)CTGCA intron-variant, nc-transcript-variant
rs112641471 -- 37,192,002(+) GGTCT(C/T)ATTTT intron-variant

Relevant External Links for TTC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TTC3-AS1 Gene

Disorders for TTC3-AS1 Gene

Relevant External Links for TTC3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TTC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC3-AS1 Gene

Publications for TTC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TTC3-AS1 Gene

Sources for TTC3-AS1 Gene

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