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Aliases for TTC3-AS1 Gene

Subcategory (RNA class) for TTC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTC3-AS1 Gene

  • TTC3 Antisense RNA 1 2 3 5
  • TTC3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TTC3-AS1 Gene

Previous GeneCards Identifiers for TTC3-AS1 Gene

  • GC21M038560

Summaries for TTC3-AS1 Gene

GeneCards Summary for TTC3-AS1 Gene

TTC3-AS1 (TTC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TTC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC3-AS1 Gene

Genomics for TTC3-AS1 Gene

GeneHancer (GH) Regulatory Elements for TTC3-AS1 Gene

Promoters and enhancers for TTC3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I036697 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.2 +493.5 493505 6.9 HDGF SIN3A GLI4 ZNF2 GLIS2 SP3 SP5 YY2 ZNF662 REST SIM2 ENSG00000224269 SETD4 ENSG00000242553 RIMKLBP1 TTC3-AS1 TTC3 DSCR9 MORC3
GH21I037071 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.5 +121.5 121484 4.2 DMAP1 YY1 ZNF213 ZNF416 ZNF143 ZNF548 SP3 NFYC ZNF610 GLIS1 TTC3 PIGP SETD4 ENSG00000242553 DYRK1A MORC3 TTC3-AS1 ENSG00000224790 LOC105372795 GC21M037042
GH21I036286 Enhancer 1.3 Ensembl ENCODE dbSUPER 21.8 +906.1 906149 4.1 PKNOX1 ZSCAN4 FEZF1 ZNF2 IRF4 ZNF335 ZNF121 ZNF302 ZNF143 ATF7 ENSG00000242553 SETD4 TTC3-AS1 ENSG00000224790 MORC3 RIMKLBP1 ENSG00000228107 DOPEY2 SRSF9P1 GC21P036251
GH21I037879 Enhancer 0.9 ENCODE dbSUPER 20.8 -684.5 -684515 0.2 ZSCAN26 NFIB ZNF140 ZNF195 LCORL ZNF776 ZNF350 FOSL2 FOS ZNF114 ENSG00000242553 TTC3-AS1 ENSG00000224790 KCNJ6 GC21M037910 GC21M037911 GC21M037815
GH21I037256 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10 -63.6 -63593 4.1 HDGF PKNOX1 FOXA2 ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 TTC3 PIGP TTC3-AS1 DYRK1A DSCR3 ENSG00000272948 ENSG00000242553 GC21P037206
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TTC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TTC3-AS1 Gene

Genomic Locations for TTC3-AS1 Gene
chr21:37,187,612-37,194,628
(GRCh38/hg38)
Size:
7,017 bases
Orientation:
Minus strand
chr21:38,559,967-38,566,227
(GRCh37/hg19)

Genomic View for TTC3-AS1 Gene

Genes around TTC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC3-AS1 Gene

Proteins for TTC3-AS1 Gene

Post-translational modifications for TTC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC3-AS1 Gene

Domains & Families for TTC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC3-AS1 Gene

Function for TTC3-AS1 Gene

Phenotypes From GWAS Catalog for TTC3-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC3-AS1 Gene

Localization for TTC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTC3-AS1 Gene

Pathways & Interactions for TTC3-AS1 Gene

SuperPathways for TTC3-AS1 Gene

No Data Available

Interacting Proteins for TTC3-AS1 Gene

Gene Ontology (GO) - Biological Process for TTC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTC3-AS1 Gene

Drugs & Compounds for TTC3-AS1 Gene

No Compound Related Data Available

Transcripts for TTC3-AS1 Gene

mRNA/cDNA for TTC3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTC3-AS1 Gene

No ASD Table

Relevant External Links for TTC3-AS1 Gene

GeneLoc Exon Structure for
TTC3-AS1
ECgene alternative splicing isoforms for
TTC3-AS1

Expression for TTC3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTC3-AS1 Gene

genes like me logo Genes that share expression patterns with TTC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTC3-AS1 Gene

Orthologs for TTC3-AS1 Gene

Evolution for TTC3-AS1 Gene

ENSEMBL:
Gene Tree for TTC3-AS1 (if available)
TreeFam:
Gene Tree for TTC3-AS1 (if available)

No data available for Orthologs for TTC3-AS1 Gene

Paralogs for TTC3-AS1 Gene

No data available for Paralogs for TTC3-AS1 Gene

Variants for TTC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for TTC3-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000442252 -- 37,196,379(-) G/A upstream_transcript_variant
rs1000563619 -- 37,196,412(-) T/A upstream_transcript_variant
rs1000780568 -- 37,195,050(-) G/C upstream_transcript_variant
rs1000811730 -- 37,195,480(-) C/T upstream_transcript_variant
rs1001268408 -- 37,196,300(-) A/G upstream_transcript_variant

Additional Variant Information for TTC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TTC3-AS1 Gene

Disorders for TTC3-AS1 Gene

Additional Disease Information for TTC3-AS1

No disorders were found for TTC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC3-AS1 Gene

Publications for TTC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TTC3-AS1 Gene

Sources for TTC3-AS1 Gene

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