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Aliases for TTC28-AS1 Gene

Subcategory (RNA class) for TTC28-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TTC28-AS1 Gene

  • TTC28 Antisense RNA 1 2 3 5
  • TTC28 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TTC28 Antisense RNA (Non-Protein Coding) 2 3
  • DJ353E16.2 3
  • TTC28-AS 3
  • TTC28AS 3

External Ids for TTC28-AS1 Gene

Previous HGNC Symbols for TTC28-AS1 Gene

  • TTC28AS
  • TTC28-AS

Previous GeneCards Identifiers for TTC28-AS1 Gene

  • GC22P028318
  • GC22P028321
  • GC22P028327

Summaries for TTC28-AS1 Gene

GeneCards Summary for TTC28-AS1 Gene

TTC28-AS1 (TTC28 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TTC28-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC28-AS1 Gene

Genomics for TTC28-AS1 Gene

GeneHancer (GH) Regulatory Elements for TTC28-AS1 Gene

Promoters and enhancers for TTC28-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I027917 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 562 +0.0 41 3.4 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 POLR2B SP3 SP5 NFYC TTC28-AS1 PITPNB ENSG00000277460 MIR3199-1 MIR3199-2 TTC28
GH22I027863 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 16.7 -51.5 -51546 9.6 ELF3 FOXA2 INSM2 MZF1 FEZF1 ZNF2 BRCA1 RAD21 YY1 ZNF366 PITPNB TTC28-AS1 MN1 TTC28 GC22M027880
GH22I028678 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.9 +760.7 760675 2.5 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF213 FOS KLF13 TTC28 CHEK2 TTC28-AS1 CCDC117 C22orf31 PIR35028
GH22I028026 Enhancer 1 Ensembl ENCODE 22 +109.6 109566 4.9 MEIS2 MXI1 PKNOX1 JUN KLF17 FEZF1 ZIC2 ZNF121 ZFHX2 POLR2A TTC28-AS1 CHEK2 TTC28 GC22M028020 RN7SL757P
GH22I028830 Enhancer 0.7 dbSUPER 30 +912.1 912095 1.1 PKNOX1 ZNF777 SUZ12 ZNF175 YBX1 ZNF670 ZIC2 RAD21 ZNF48 ZSCAN21 TTC28-AS1 ENSG00000226471 XBP1 EWSR1 CCDC117 CHEK2 GC22M028836 ENSG00000272858 ZNRF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TTC28-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TTC28-AS1 Gene

Genomic Locations for TTC28-AS1 Gene
chr22:27,919,376-28,008,581
(GRCh38/hg38)
Size:
89,206 bases
Orientation:
Plus strand
chr22:28,315,364-28,404,569
(GRCh37/hg19)

Genomic View for TTC28-AS1 Gene

Genes around TTC28-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTC28-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC28-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC28-AS1 Gene

Proteins for TTC28-AS1 Gene

Post-translational modifications for TTC28-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC28-AS1 Gene

Domains & Families for TTC28-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC28-AS1 Gene

Function for TTC28-AS1 Gene

Phenotypes From GWAS Catalog for TTC28-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC28-AS1 Gene

Localization for TTC28-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTC28-AS1 Gene

Pathways & Interactions for TTC28-AS1 Gene

SuperPathways for TTC28-AS1 Gene

No Data Available

Interacting Proteins for TTC28-AS1 Gene

Gene Ontology (GO) - Biological Process for TTC28-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTC28-AS1 Gene

Drugs & Compounds for TTC28-AS1 Gene

No Compound Related Data Available

Transcripts for TTC28-AS1 Gene

mRNA/cDNA for TTC28-AS1 Gene

(8) Additional mRNA sequences :
(21) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTC28-AS1 Gene

TTC28 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTC28-AS1 Gene

No ASD Table

Relevant External Links for TTC28-AS1 Gene

GeneLoc Exon Structure for
TTC28-AS1
ECgene alternative splicing isoforms for
TTC28-AS1

Expression for TTC28-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TTC28-AS1 Gene

SOURCE GeneReport for Unigene cluster for TTC28-AS1 Gene:

Hs.602319
genes like me logo Genes that share expression patterns with TTC28-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTC28-AS1 Gene

Orthologs for TTC28-AS1 Gene

Evolution for TTC28-AS1 Gene

ENSEMBL:
Gene Tree for TTC28-AS1 (if available)
TreeFam:
Gene Tree for TTC28-AS1 (if available)

No data available for Orthologs for TTC28-AS1 Gene

Paralogs for TTC28-AS1 Gene

No data available for Paralogs for TTC28-AS1 Gene

Variants for TTC28-AS1 Gene

Sequence variations from dbSNP and Humsavar for TTC28-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000014058 -- 27,925,118(+) G/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000066313 -- 27,925,492(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000170076 -- 27,999,947(+) C/T genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000198092 -- 27,957,205(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000226010 -- 27,978,397(+) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TTC28-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3568347 CNV loss 25503493
esv3568348 CNV loss 25503493
nsv1129409 OTHER inversion 24896259
nsv473282 CNV novel sequence insertion 20440878
nsv522306 CNV loss 19592680

Additional Variant Information for TTC28-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC28-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTC28-AS1 Gene

Disorders for TTC28-AS1 Gene

Additional Disease Information for TTC28-AS1

No disorders were found for TTC28-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC28-AS1 Gene

Publications for TTC28-AS1 Gene

  1. Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping. (PMID: 11258795) Hirosawa M … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 2 3 58
  2. A genome-wide association study on obesity and obesity-related traits. (PMID: 21552555) Wang K … Price RA (PloS one 2011) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TTC28-AS1 Gene

Sources for TTC28-AS1 Gene

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