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Aliases for TTC28-AS1 Gene

Subcategory (RNA class) for TTC28-AS1 Gene


Quality Score for this RNA gene is


Aliases for TTC28-AS1 Gene

  • TTC28 Antisense RNA 1 2 3
  • TTC28 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TTC28 Antisense RNA (Non-Protein Coding) 2 3
  • DJ353E16.2 3
  • TTC28-AS 3
  • TTC28AS 3

External Ids for TTC28-AS1 Gene

ORGUL Members for TTC28-AS1 Gene

Previous HGNC Symbols for TTC28-AS1 Gene

  • TTC28AS
  • TTC28-AS

Previous GeneCards Identifiers for TTC28-AS1 Gene

  • GC22P028318
  • GC22P028321
  • GC22P028327

Summaries for TTC28-AS1 Gene

GeneCards Summary for TTC28-AS1 Gene

TTC28-AS1 (TTC28 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for TTC28-AS1 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTC28-AS1 Gene

Genomics for TTC28-AS1 Gene

Genomic Location for TTC28-AS1 Gene

27,919,376 bp from pter
28,008,581 bp from pter
89,206 bases
Plus strand

Genomic View for TTC28-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTC28-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC28-AS1 Gene

No data available for Regulatory Elements for TTC28-AS1 Gene

Proteins for TTC28-AS1 Gene

Post-translational modifications for TTC28-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC28-AS1 Gene

Domains for TTC28-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC28-AS1 Gene

Function for TTC28-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTC28-AS1 Gene

Localization for TTC28-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTC28-AS1 Gene

Pathways for TTC28-AS1 Gene

SuperPathways for TTC28-AS1 Gene

No Data Available

Interacting Proteins for TTC28-AS1 Gene

Gene Ontology (GO) - Biological Process for TTC28-AS1 Gene


No data available for Pathways by source for TTC28-AS1 Gene

Transcripts for TTC28-AS1 Gene

mRNA/cDNA for TTC28-AS1 Gene

(8) Additional mRNA sequences :
(24) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTC28-AS1 Gene

TTC28 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTC28-AS1 Gene

No ASD Table

Relevant External Links for TTC28-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TTC28-AS1 Gene

mRNA expression in normal human tissues for TTC28-AS1 Gene

SOURCE GeneReport for Unigene cluster for TTC28-AS1 Gene Hs.602319

genes like me logo Genes that share expressions with TTC28-AS1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for TTC28-AS1 Gene

Orthologs for TTC28-AS1 Gene

Evolution for TTC28-AS1 Gene

Gene Tree for TTC28-AS1 (if available)
Gene Tree for TTC28-AS1 (if available)

No data available for Orthologs for TTC28-AS1 Gene

Paralogs for TTC28-AS1 Gene

No data available for Paralogs for TTC28-AS1 Gene

Variants for TTC28-AS1 Gene

Sequence variations from dbSNP and Humsavar for TTC28-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs138630 -- 27,974,553(+) TATAG(C/T)TCTTA intron-variant
rs138631 -- 27,976,846(+) TTTGC(C/T)AAGtt intron-variant
rs738455 -- 27,954,624(+) CAGCC(C/T)ATTTT intron-variant
rs957601 -- 27,940,235(-) TTTGC(G/T)TTAAA intron-variant
rs1028364 -- 27,936,166(+) attgc(A/G)tatca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTC28-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv522306 CNV Loss 19592680

Relevant External Links for TTC28-AS1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTC28-AS1 Gene

Disorders for TTC28-AS1 Gene

No disorders were found for TTC28-AS1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for TTC28-AS1 Gene

Publications for TTC28-AS1 Gene

  1. Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping. (PMID: 11258795) Hirosawa M. … Ohara O. (DNA Res. 2001) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. A genome-wide association study on obesity and obesity-related traits. (PMID: 21552555) Wang K. … Price R.A. (PLoS ONE 2011) 3

Products for TTC28-AS1 Gene

Sources for TTC28-AS1 Gene

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