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Aliases for TTC28-AS1 Gene

Subcategory (RNA class) for TTC28-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TTC28-AS1 Gene

  • TTC28 Antisense RNA 1 2 3 5
  • TTC28 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TTC28 Antisense RNA (Non-Protein Coding) 2 3
  • DJ353E16.2 3
  • TTC28-AS 3
  • TTC28AS 3

External Ids for TTC28-AS1 Gene

Previous HGNC Symbols for TTC28-AS1 Gene

  • TTC28AS
  • TTC28-AS

Previous GeneCards Identifiers for TTC28-AS1 Gene

  • GC22P028318
  • GC22P028321
  • GC22P028327

Summaries for TTC28-AS1 Gene

GeneCards Summary for TTC28-AS1 Gene

TTC28-AS1 (TTC28 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC28-AS1 Gene

Genomics for TTC28-AS1 Gene

Regulatory Elements for TTC28-AS1 Gene

Enhancers for TTC28-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F028026 1.2 Ensembl ENCODE 22 +109.6 109566 4.9 PKNOX1 SIN3A FEZF1 ZNF121 REST PPARG NFIL3 ATF4 SSRP1 ZNF585B TTC28-AS1 CHEK2 TTC28 GC22M028020 RN7SL757P
GH22F027863 1.5 FANTOM5 Ensembl ENCODE 16.7 -51.5 -51547 9.6 ELF3 INSM2 FEZF1 BRCA1 RAD21 ZNF2 YY1 ZNF366 FOS MIXL1 PITPNB TTC28-AS1 MN1 TTC28 GC22M027880
GH22F028791 1.5 FANTOM5 Ensembl ENCODE 13.2 +875.3 875292 6.3 ATF1 PKNOX1 ZFP64 YY1 ZNF121 PAF1 ZNF263 SP5 JUNB TBX21 TTC28-AS1 ZNRF3 ENSG00000272858 HSCB CHEK2 XBP1 PIR46010
GH22F027632 1.1 VISTA ENCODE 14.5 -286.3 -286343 1.5 PKNOX1 KLF17 FEZF1 ZNF121 EGR2 ZNF645 NR2F2 ZFP69B KLF16 ZNF585B ENSG00000224027 ENSG00000227880 TTC28-AS1 ENSG00000231495
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TTC28-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TTC28-AS1 Gene

27,919,376 bp from pter
28,008,581 bp from pter
89,206 bases
Plus strand

Genomic View for TTC28-AS1 Gene

Genes around TTC28-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTC28-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC28-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC28-AS1 Gene

Proteins for TTC28-AS1 Gene

Post-translational modifications for TTC28-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC28-AS1 Gene

Domains & Families for TTC28-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC28-AS1 Gene

Function for TTC28-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC28-AS1 Gene

Localization for TTC28-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTC28-AS1 Gene

Pathways & Interactions for TTC28-AS1 Gene

SuperPathways for TTC28-AS1 Gene

No Data Available

Interacting Proteins for TTC28-AS1 Gene

Gene Ontology (GO) - Biological Process for TTC28-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TTC28-AS1 Gene

Transcripts for TTC28-AS1 Gene

mRNA/cDNA for TTC28-AS1 Gene

(8) Additional mRNA sequences :
(21) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTC28-AS1 Gene

TTC28 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTC28-AS1 Gene

No ASD Table

Relevant External Links for TTC28-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TTC28-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TTC28-AS1 Gene

SOURCE GeneReport for Unigene cluster for TTC28-AS1 Gene:

genes like me logo Genes that share expression patterns with TTC28-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TTC28-AS1 Gene

Orthologs for TTC28-AS1 Gene

Evolution for TTC28-AS1 Gene

Gene Tree for TTC28-AS1 (if available)
Gene Tree for TTC28-AS1 (if available)

No data available for Orthologs for TTC28-AS1 Gene

Paralogs for TTC28-AS1 Gene

No data available for Paralogs for TTC28-AS1 Gene

Variants for TTC28-AS1 Gene

Sequence variations from dbSNP and Humsavar for TTC28-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1028364 -- 27,936,166(+) attgc(A/G)tatca intron-variant
rs10483140 -- 27,922,204(+) GAACC(C/G)TATGG intron-variant, upstream-variant-2KB
rs10564481 -- 27,971,719(+) TATGT(-/TA)TATAT intron-variant
rs10643856 -- 27,988,281(+) CTTGC(-/T)TTTTT intron-variant
rs10652836 -- 27,971,716(+) TATAT(-/AT)GTTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTC28-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv522306 CNV loss 19592680
nsv473282 CNV novel sequence insertion 20440878
nsv1129409 OTHER inversion 24896259
esv3568348 CNV loss 25503493
esv3568347 CNV loss 25503493

Relevant External Links for TTC28-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTC28-AS1 Gene

Disorders for TTC28-AS1 Gene

Relevant External Links for TTC28-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TTC28-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC28-AS1 Gene

Publications for TTC28-AS1 Gene

  1. Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping. (PMID: 11258795) Hirosawa M. … Ohara O. (DNA Res. 2001) 2 3 64
  2. A genome-wide association study on obesity and obesity-related traits. (PMID: 21552555) Wang K. … Price R.A. (PLoS ONE 2011) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TTC28-AS1 Gene

Sources for TTC28-AS1 Gene

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