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Aliases for TTC28-AS1 Gene

Subcategory (RNA class) for TTC28-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TTC28-AS1 Gene

  • TTC28 Antisense RNA 1 2 3
  • TTC28 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TTC28 Antisense RNA (Non-Protein Coding) 2 3
  • DJ353E16.2 3
  • TTC28-AS 3
  • TTC28AS 3

External Ids for TTC28-AS1 Gene

ORGUL Members for TTC28-AS1 Gene

Previous HGNC Symbols for TTC28-AS1 Gene

  • TTC28AS
  • TTC28-AS

Previous GeneCards Identifiers for TTC28-AS1 Gene

  • GC22P028318
  • GC22P028321
  • GC22P028327

Summaries for TTC28-AS1 Gene

GeneCards Summary for TTC28-AS1 Gene

TTC28-AS1 (TTC28 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for TTC28-AS1 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TTC28-AS1 Gene

Genomics for TTC28-AS1 Gene

Genomic Location for TTC28-AS1 Gene

Start:
27,919,376 bp from pter
End:
28,008,581 bp from pter
Size:
89,206 bases
Orientation:
Plus strand

Genomic View for TTC28-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTC28-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC28-AS1 Gene

No data available for Regulatory Elements for TTC28-AS1 Gene

Proteins for TTC28-AS1 Gene

Post-translational modifications for TTC28-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC28-AS1 Gene

Domains for TTC28-AS1 Gene

Gene Families for TTC28-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTC28-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC28-AS1 Gene

Function for TTC28-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTC28-AS1 Gene

Localization for TTC28-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TTC28-AS1 Gene

Pathways for TTC28-AS1 Gene

SuperPathways for TTC28-AS1 Gene

No Data Available

Interacting Proteins for TTC28-AS1 Gene

Gene Ontology (GO) - Biological Process for TTC28-AS1 Gene

None

No data available for Pathways by source for TTC28-AS1 Gene

Transcripts for TTC28-AS1 Gene

mRNA/cDNA for TTC28-AS1 Gene

(8) Additional mRNA sequences :
(24) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTC28-AS1 Gene

TTC28 antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TTC28-AS1
    • Block miRNA regulation of TTC28-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for TTC28-AS1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for TTC28-AS1 Gene

    No ASD Table

    Relevant External Links for TTC28-AS1 Gene

    GeneLoc Exon Structure for
    TTC28-AS1
    ECgene alternative splicing isoforms for
    TTC28-AS1

    Expression for TTC28-AS1 Gene

    mRNA expression in normal human tissues for TTC28-AS1 Gene

    SOURCE GeneReport for Unigene cluster for TTC28-AS1 Gene Hs.602319

    genes like me logo Genes that share expressions with TTC28-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TTC28-AS1 Gene

    Orthologs for TTC28-AS1 Gene

    Evolution for TTC28-AS1 Gene

    ENSEMBL:
    Gene Tree for TTC28-AS1 (if available)
    TreeFam:
    Gene Tree for TTC28-AS1 (if available)

    No data available for Orthologs for TTC28-AS1 Gene

    Paralogs for TTC28-AS1 Gene

    No data available for Paralogs for TTC28-AS1 Gene

    Variants for TTC28-AS1 Gene

    Sequence variations from dbSNP and Humsavar for TTC28-AS1 Gene

    SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
    rs138630 -- 27,974,553(+) TATAG(C/T)TCTTA intron-variant
    rs138631 -- 27,976,846(+) TTTGC(C/T)AAGtt intron-variant
    rs738455 -- 27,954,624(+) CAGCC(C/T)ATTTT intron-variant
    rs957601 -- 27,940,235(-) TTTGC(G/T)TTAAA intron-variant
    rs1028364 -- 27,936,166(+) attgc(A/G)tatca intron-variant

    Structural Variations from Database of Genomic Variants (DGV) for TTC28-AS1 Gene

    Variant ID Type Subtype PubMed ID
    nsv522306 CNV Loss 19592680

    Relevant External Links for TTC28-AS1 Gene

    HapMap Linkage Disequilibrium report
    TTC28-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTC28-AS1 Gene

    Disorders for TTC28-AS1 Gene

    No disorders were found for TTC28-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for TTC28-AS1 Gene

    Publications for TTC28-AS1 Gene

    1. Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping. (PMID: 11258795) Hirosawa M. … Ohara O. (DNA Res. 2001) 2 3
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    3. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
    5. A genome-wide association study on obesity and obesity-related traits. (PMID: 21552555) Wang K. … Price R.A. (PLoS ONE 2011) 3

    Products for TTC28-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate TTC28-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for TTC28-AS1
      • Block miRNA regulation of TTC28-AS1 using miScript Target Protectors

      Sources for TTC28-AS1 Gene

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