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Aliases for TTC24 Gene

Aliases for TTC24 Gene

  • Tetratricopeptide Repeat Domain 24 2 3 5
  • TPR Repeat Protein 24 4

External Ids for TTC24 Gene

Previous GeneCards Identifiers for TTC24 Gene

  • GC01P153365
  • GC01P154817
  • GC01P127907

Summaries for TTC24 Gene

GeneCards Summary for TTC24 Gene

TTC24 (Tetratricopeptide Repeat Domain 24) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC24 Gene

Genomics for TTC24 Gene

Regulatory Elements for TTC24 Gene

Enhancers for TTC24 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F156581 0.5 ENCODE 14.8 +2.9 2885 2.9 CTCF ESRRA TAF1 CEBPG RAD21 RFX5 GLIS2 EGR1 ZNF366 POLR2A TTC24 NAXE GPATCH4 SMG5 HAPLN2
GH01F156569 0.9 FANTOM5 ENCODE 6.6 -8.2 -8184 3.3 ATF1 CREB3L1 ZFP64 ARID4B SIN3A FEZF1 GLI4 ZNF2 ETS1 ZNF143 NAXE PEAR1 MEF2D MSTO2P BCAN CCT3 TSACC GPATCH4 TTC24 IQGAP3
GH01F156585 0.2 ENCODE 0.8 +4.5 4507 0.2 CTCF ESRRA MAX RAD21 RFX5 ZNF366 ZNF143 SMC3 DEK ZNF654 GPATCH4 TTC24 NAXE
GH01F156584 0.6 Ensembl 0.4 +5.3 5334 0.8 CTCF GLIS2 GLIS1 SMC3 ZEB2 RAD21 ZBTB7A ZNF2 ETS1 NAXE TTC24
GH01F156590 0.6 ENCODE 0.4 +12.0 11984 2.2 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 ZNF121 ZNF548 PAF1 ZNF263 SP3 KIAA0907 NAXE LOC246784 GPATCH4 RRNAD1 TTC24
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TTC24 on UCSC Golden Path with GeneCards custom track

Genomic Location for TTC24 Gene

Chromosome:
1
Start:
156,579,727 bp from pter
End:
156,587,797 bp from pter
Size:
8,071 bases
Orientation:
Plus strand

Genomic View for TTC24 Gene

Genes around TTC24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTC24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC24 Gene

Proteins for TTC24 Gene

  • Protein details for TTC24 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A2A3L6-TTC24_HUMAN
    Recommended name:
    Tetratricopeptide repeat protein 24
    Protein Accession:
    A2A3L6
    Secondary Accessions:
    • Q5T3H7

    Protein attributes for TTC24 Gene

    Size:
    582 amino acids
    Molecular mass:
    63396 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TTC24 Gene

Post-translational modifications for TTC24 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TTC24 Gene

No data available for DME Specific Peptides for TTC24 Gene

Domains & Families for TTC24 Gene

Gene Families for TTC24 Gene

Protein Domains for TTC24 Gene

Suggested Antigen Peptide Sequences for TTC24 Gene

Graphical View of Domain Structure for InterPro Entry

A2A3L6

UniProtKB/Swiss-Prot:

TTC24_HUMAN :
  • Contains 8 TPR repeats.
Similarity:
  • Contains 8 TPR repeats.
genes like me logo Genes that share domains with TTC24: view

Function for TTC24 Gene

Phenotypes for TTC24 Gene

GenomeRNAi human phenotypes for TTC24:
genes like me logo Genes that share phenotypes with TTC24: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC24 Gene

Localization for TTC24 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TTC24 Gene COMPARTMENTS Subcellular localization image for TTC24 gene
Compartment Confidence
nucleus 4
cytosol 3
mitochondrion 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TTC24 Gene

Pathways & Interactions for TTC24 Gene

SuperPathways for TTC24 Gene

No Data Available

Interacting Proteins for TTC24 Gene

Gene Ontology (GO) - Biological Process for TTC24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTC24 Gene

Transcripts for TTC24 Gene

mRNA/cDNA for TTC24 Gene

(5) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(10) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TTC24 Gene

Tetratricopeptide repeat domain 24:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTC24 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7
SP1: -
SP2: -
SP3: - -

Relevant External Links for TTC24 Gene

GeneLoc Exon Structure for
TTC24
ECgene alternative splicing isoforms for
TTC24

Expression for TTC24 Gene

mRNA expression in normal human tissues for TTC24 Gene

mRNA differential expression in normal tissues according to GTEx for TTC24 Gene

This gene is overexpressed in Spleen (x13.5), Small Intestine - Terminal Ileum (x7.0), and Whole Blood (x5.0).

Protein differential expression in normal tissues from HIPED for TTC24 Gene

This gene is overexpressed in Placenta (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TTC24 Gene



Protein tissue co-expression partners for TTC24 Gene

NURSA nuclear receptor signaling pathways regulating expression of TTC24 Gene:

TTC24

SOURCE GeneReport for Unigene cluster for TTC24 Gene:

Hs.447851
genes like me logo Genes that share expression patterns with TTC24: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TTC24 Gene

Orthologs for TTC24 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TTC24 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TTC24 34 35
  • 98.35 (n)
cow
(Bos Taurus)
Mammalia TTC24 34 35
  • 83.24 (n)
dog
(Canis familiaris)
Mammalia TTC24 34 35
  • 83.14 (n)
rat
(Rattus norvegicus)
Mammalia Ttc24 34
  • 75.43 (n)
mouse
(Mus musculus)
Mammalia Ttc24 34 16 35
  • 73.9 (n)
oppossum
(Monodelphis domestica)
Mammalia TTC24 35
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TTC24 35
  • 39 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ttc24 34
  • 54.71 (n)
Species where no ortholog for TTC24 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TTC24 Gene

ENSEMBL:
Gene Tree for TTC24 (if available)
TreeFam:
Gene Tree for TTC24 (if available)

Paralogs for TTC24 Gene

No data available for Paralogs for TTC24 Gene

Variants for TTC24 Gene

Sequence variations from dbSNP and Humsavar for TTC24 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10686745 -- 156,578,258(+) GAGAG(-/AGAGAGAGAGAGAG/AGAGAGTGAGAG)TGTGT upstream-variant-2KB
rs10686747 -- 156,578,299(+) AGAGA(-/GAGAGA)AAGGG upstream-variant-2KB
rs10796960 -- 156,585,408(+) AGTTC(A/G)CAAGT intron-variant
rs10796961 -- 156,586,529(+) GAGTC(A/G)GGCAT reference, synonymous-codon
rs10908508 -- 156,579,091(+) AAGAC(C/G)GGGTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TTC24 Gene

Variant ID Type Subtype PubMed ID
esv3307944 CNV mobile element insertion 20981092
esv3444518 CNV insertion 20981092
nsv523181 CNV loss 19592680

Variation tolerance for TTC24 Gene

Gene Damage Index Score: 12.99; 94.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TTC24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TTC24 Gene

Disorders for TTC24 Gene

Relevant External Links for TTC24

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TTC24

No disorders were found for TTC24 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC24 Gene

Publications for TTC24 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for TTC24 Gene

Sources for TTC24 Gene

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