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Aliases for TTC16 Gene

Aliases for TTC16 Gene

  • Tetratricopeptide Repeat Domain 16 2 3
  • TPR Repeat Protein 16 4

External Ids for TTC16 Gene

Summaries for TTC16 Gene

GeneCards Summary for TTC16 Gene

TTC16 (Tetratricopeptide Repeat Domain 16) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC16 Gene

Genomics for TTC16 Gene

Genomic Location for TTC16 Gene

Start:
127,716,066 bp from pter
End:
127,731,600 bp from pter
Size:
15,535 bases
Orientation:
Plus strand

Genomic View for TTC16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTC16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC16 Gene

Regulatory Elements for TTC16 Gene

Proteins for TTC16 Gene

  • Protein details for TTC16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NEE8-TTC16_HUMAN
    Recommended name:
    Tetratricopeptide repeat protein 16
    Protein Accession:
    Q8NEE8
    Secondary Accessions:
    • B4DYG4
    • B5ME24
    • Q5JU66
    • Q96M72

    Protein attributes for TTC16 Gene

    Size:
    873 amino acids
    Molecular mass:
    98309 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TTC16 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TTC16 Gene

Proteomics data for TTC16 Gene at MOPED

Post-translational modifications for TTC16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TTC16 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TTC16 Gene

Domains for TTC16 Gene

Gene Families for TTC16 Gene

HGNC:
  • TTC :Tetratricopeptide (TTC) repeat domain containing

Protein Domains for TTC16 Gene

UniProtKB/Swiss-Prot:

TTC16_HUMAN
Similarity:
  • Contains 8 TPR repeats.:
    • Q8NEE8
genes like me logo Genes that share domains with TTC16: view

Function for TTC16 Gene

Gene Ontology (GO) - Molecular Function for TTC16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TTC16: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTC16 Gene

Localization for TTC16 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TTC16 Gene COMPARTMENTS Subcellular localization image for TTC16 gene
Compartment Confidence
nucleus 3
cytosol 2
cytoskeleton 1

No data available for Gene Ontology (GO) - Cellular Components for TTC16 Gene

Pathways for TTC16 Gene

SuperPathways for TTC16 Gene

No Data Available

Interacting Proteins for TTC16 Gene

Gene Ontology (GO) - Biological Process for TTC16 Gene

None

No data available for Pathways by source for TTC16 Gene

Transcripts for TTC16 Gene

Unigene Clusters for TTC16 Gene

Tetratricopeptide repeat domain 16:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTC16 Gene

No ASD Table

Relevant External Links for TTC16 Gene

GeneLoc Exon Structure for
TTC16
ECgene alternative splicing isoforms for
TTC16

Expression for TTC16 Gene

mRNA expression in normal human tissues for TTC16 Gene

mRNA differential expression in normal tissues according to GTEx for TTC16 Gene

This gene is overexpressed in Testis (31.1) and Whole Blood (5.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TTC16 Gene

SOURCE GeneReport for Unigene cluster for TTC16 Gene Hs.642748

genes like me logo Genes that share expressions with TTC16: view

Orthologs for TTC16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TTC16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TTC16 36
  • 99.12 (n)
  • 98.63 (a)
TTC16 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TTC16 36
  • 76.97 (n)
  • 67.45 (a)
TTC16 37
  • 58 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TTC16 36
  • 79.12 (n)
  • 70.59 (a)
TTC16 37
  • 50 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ttc16 36
  • 72.13 (n)
  • 60.31 (a)
Ttc16 16
Ttc16 37
  • 52 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TTC16 37
  • 58 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TTC16 37
  • 46 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100362059 36
  • 69.21 (n)
  • 57.77 (a)
chicken
(Gallus gallus)
Aves TTC16 36
  • 55.46 (n)
  • 41 (a)
TTC16 37
  • 41 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TTC16 37
  • 45 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 49 (a)
OneToOne
Species with no ortholog for TTC16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TTC16 Gene

ENSEMBL:
Gene Tree for TTC16 (if available)
TreeFam:
Gene Tree for TTC16 (if available)

Paralogs for TTC16 Gene

No data available for Paralogs for TTC16 Gene

Variants for TTC16 Gene

Sequence variations from dbSNP and Humsavar for TTC16 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs472144 -- 127,727,279(+) CTTAA(A/G)CGGCA reference, synonymous-codon
rs537881 -- 127,723,339(+) GTACT(A/G)CATGG intron-variant
rs538927 -- 127,726,215(+) AGCAG(C/T)TTGGG intron-variant
rs544300 -- 127,726,794(+) AAAAA(A/C)AAAAA intron-variant
rs553083 -- 127,729,204(+) GTATT(A/G)GGAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTC16 Gene

Variant ID Type Subtype PubMed ID
nsv893859 CNV Loss 21882294
nsv893860 CNV Gain 21882294
nsv893865 CNV Loss 21882294
nsv893866 CNV Gain 21882294
nsv893867 CNV Loss 21882294
nsv893868 CNV Loss 21882294
dgv8287n71 CNV Loss 21882294
nsv466571 CNV Loss 19166990
nsv893870 CNV Loss 21882294
nsv471323 CNV Loss 18288195

Relevant External Links for TTC16 Gene

HapMap Linkage Disequilibrium report
TTC16

Disorders for TTC16 Gene

No disorders were found for TTC16 Gene.

No data available for UniProtKB/Swiss-Prot for TTC16 Gene

Publications for TTC16 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for TTC16 Gene

Sources for TTC16 Gene

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