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Aliases for TTC13 Gene

Aliases for TTC13 Gene

  • Tetratricopeptide Repeat Domain 13 2 3
  • TPR Repeat Protein 13 4

External Ids for TTC13 Gene

Summaries for TTC13 Gene

GeneCards Summary for TTC13 Gene

TTC13 (Tetratricopeptide Repeat Domain 13) is a Protein Coding gene. An important paralog of this gene is TTC6.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC13 Gene

Genomics for TTC13 Gene

Genomic Location for TTC13 Gene

Start:
230,906,241 bp from pter
End:
230,978,875 bp from pter
Size:
72,635 bases
Orientation:
Minus strand

Genomic View for TTC13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TTC13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC13 Gene

Regulatory Elements for TTC13 Gene

Proteins for TTC13 Gene

  • Protein details for TTC13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NBP0-TTC13_HUMAN
    Recommended name:
    Tetratricopeptide repeat protein 13
    Protein Accession:
    Q8NBP0
    Secondary Accessions:
    • B1AQI1
    • B1AQI2
    • Q8IVP8
    • Q8NBI0
    • Q8ND20

    Protein attributes for TTC13 Gene

    Size:
    860 amino acids
    Molecular mass:
    96813 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TTC13 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TTC13 Gene

Proteomics data for TTC13 Gene at MOPED

Post-translational modifications for TTC13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TTC13 Gene

Domains for TTC13 Gene

Gene Families for TTC13 Gene

HGNC:
  • TTC :Tetratricopeptide (TTC) repeat domain containing

Protein Domains for TTC13 Gene

UniProtKB/Swiss-Prot:

TTC13_HUMAN
Similarity:
  • Contains 7 TPR repeats.:
    • Q8NBP0
genes like me logo Genes that share domains with TTC13: view

Function for TTC13 Gene

Gene Ontology (GO) - Molecular Function for TTC13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TTC13: view

Phenotypes for TTC13 Gene

GenomeRNAi human phenotypes for TTC13:
genes like me logo Genes that share phenotypes with TTC13: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TTC13 Gene

Localization for TTC13 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TTC13 Gene COMPARTMENTS Subcellular localization image for TTC13 gene
Compartment Confidence
endoplasmic reticulum 2
extracellular 2
cytosol 1
mitochondrion 1
peroxisome 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for TTC13 Gene

Pathways for TTC13 Gene

SuperPathways for TTC13 Gene

No Data Available

Interacting Proteins for TTC13 Gene

Gene Ontology (GO) - Biological Process for TTC13 Gene

None

No data available for Pathways by source for TTC13 Gene

Transcripts for TTC13 Gene

Unigene Clusters for TTC13 Gene

Tetratricopeptide repeat domain 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TTC13 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21a · 21b ^ 22 ^ 23 ^
SP1: - -
SP2: - - - -
SP3:
SP4:

ExUns: 24
SP1:
SP2:
SP3:
SP4:

Relevant External Links for TTC13 Gene

GeneLoc Exon Structure for
TTC13
ECgene alternative splicing isoforms for
TTC13

Expression for TTC13 Gene

mRNA expression in normal human tissues for TTC13 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TTC13 Gene

SOURCE GeneReport for Unigene cluster for TTC13 Gene Hs.424788

genes like me logo Genes that share expressions with TTC13: view

Orthologs for TTC13 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TTC13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TTC13 36
  • 99.88 (n)
  • 99.88 (a)
TTC13 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TTC13 36
  • 93.04 (n)
  • 99.27 (a)
TTC13 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TTC13 36
  • 93.29 (n)
  • 98.25 (a)
TTC13 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ttc13 36
  • 85.67 (n)
  • 96.98 (a)
Ttc13 16
Ttc13 37
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TTC13 37
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TTC13 37
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ttc13 36
  • 86.07 (n)
  • 96.85 (a)
chicken
(Gallus gallus)
Aves TTC13 36
  • 81.36 (n)
  • 91.01 (a)
TTC13 37
  • 86 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TTC13 37
  • 79 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.15150 36
tropical clawed frog
(Silurana tropicalis)
Amphibia ttc13 36
  • 75.29 (n)
  • 84.92 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.17426 36
ttc13 36
  • 72.4 (n)
  • 79.83 (a)
ttc13 37
  • 77 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons SRFR1 36
  • 44.15 (n)
  • 30.71 (a)
rice
(Oryza sativa)
Liliopsida Os07g0113700 36
  • 43.96 (n)
  • 30.86 (a)
Species with no ortholog for TTC13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TTC13 Gene

ENSEMBL:
Gene Tree for TTC13 (if available)
TreeFam:
Gene Tree for TTC13 (if available)

Paralogs for TTC13 Gene

Paralogs for TTC13 Gene

Selected SIMAP similar genes for TTC13 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with TTC13: view

Variants for TTC13 Gene

Sequence variations from dbSNP and Humsavar for TTC13 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs950029 -- 230,928,865(-) tggca(C/T)gctac intron-variant
rs1343674 -- 230,928,800(-) agcat(A/G)ctatc intron-variant
rs1890351 -- 230,933,906(+) TGTTA(A/C)AATTG intron-variant
rs1890352 -- 230,934,068(+) AAATA(C/T)GAGCC intron-variant
rs1890355 -- 230,946,344(+) ATCTA(C/T)TGTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TTC13 Gene

Variant ID Type Subtype PubMed ID
esv270056 CNV Insertion 20981092
esv272542 CNV Insertion 20981092

Relevant External Links for TTC13 Gene

HapMap Linkage Disequilibrium report
TTC13

Disorders for TTC13 Gene

Relevant External Links for TTC13

Genetic Association Database (GAD)
TTC13
genes like me logo Genes that share disorders with TTC13: view

No data available for UniProtKB/Swiss-Prot for TTC13 Gene

Publications for TTC13 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Proteomic identification of common SCF ubiquitin ligase FBXO6-interacting glycoproteins in three kinds of cells. (PMID: 22268729) Liu B. … Wang L.S. (J. Proteome Res. 2012) 3
  5. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 49

Products for TTC13 Gene

Sources for TTC13 Gene

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