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Aliases for TSSC2 Gene

Aliases for TSSC2 Gene

  • Tumor Suppressing Subtransferable Candidate 2 Pseudogene 2 3 5
  • Asparagine-Linked Glycosylation 1 Homolog (Yeast, Beta-1,4-Mannosyltransferase) (ALG1) Pseudogene 2
  • Tumor Suppressing Subtransferable Candidate 2 2
  • Tumor-Supressing STF CDNA 2 2

External Ids for TSSC2 Gene

Previous GeneCards Identifiers for TSSC2 Gene

  • GC00U990391
  • GC11U900682
  • GC11P003382
  • GC11P003422
  • GC11P003406

Summaries for TSSC2 Gene

GeneCards Summary for TSSC2 Gene

TSSC2 (Tumor Suppressing Subtransferable Candidate 2 Pseudogene) is a Pseudogene.

Additional gene information for TSSC2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSSC2 Gene

Genomics for TSSC2 Gene

GeneHancer (GH) Regulatory Elements for TSSC2 Gene

Promoters and enhancers for TSSC2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I003377 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 584.2 -1.1 -1134 4.6 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 TSSC2 ZNF195 NUP98 RRM1 TSSC4
GH11I003852 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.2 +476.6 476559 9.9 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 STIM1 LOC105376527 MIR4687 ENSG00000206976 OSBPL5 TSSC2 RHOG RRM1 PPIAP40 ENSG00000229368
GH11I003339 Enhancer 0.8 ENCODE 12.2 -40.8 -40769 1.6 HDAC1 ATF1 ARNT NFRKB FOS ATF7 CREM NCOA1 ZEB2 ZNF592 ZNF195 TSSC2 ENSG00000224513 MRGPRG-AS1 MRGPRG RNU1-91P NAP1L4 SNORA54 ART1 ART5
GH11I003404 Enhancer 0.9 ENCODE 10.6 +23.9 23858 1.2 HDAC1 HDGF PKNOX1 ATF1 TAF9B NFRKB ZBTB40 EGR1 ATF7 SMARCA5 GC11M003401 NUP98 TSSC2 FAM86GP
GH11I002428 Enhancer 0.9 ENCODE 10.6 -952.6 -952565 0.2 HDAC1 YBX3 HDGF ZNF133 NFXL1 YBX1 ZNF2 RAD21 ARID2 ZNF143 TNNT3 H19 OSBPL5 TSSC4 TSSC2 GC11P002420 TRPM5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSSC2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSSC2 Gene

Genomic Locations for TSSC2 Gene
chr11:3,380,961-3,409,148
(GRCh38/hg38)
Size:
28,188 bases
Orientation:
Plus strand
chr11:3,402,191-3,430,208
(GRCh37/hg19)

Genomic View for TSSC2 Gene

Genes around TSSC2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSSC2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSSC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSSC2 Gene

Proteins for TSSC2 Gene

Post-translational modifications for TSSC2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSSC2 Gene

Domains & Families for TSSC2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSSC2 Gene

Function for TSSC2 Gene

Molecular function for TSSC2 Gene

GENATLAS Biochemistry:
tumor suppressing subchromosomal transferable DNA fragment (STF2),inducing tumor cell growth arrest in malignant cell line (i.e) rhabdomyosarcoma,homolog of C elegans beta-mannosyltransferase

Phenotypes From GWAS Catalog for TSSC2 Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSSC2 Gene

Localization for TSSC2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSSC2 Gene

Pathways & Interactions for TSSC2 Gene

SuperPathways for TSSC2 Gene

No Data Available

Interacting Proteins for TSSC2 Gene

Gene Ontology (GO) - Biological Process for TSSC2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSSC2 Gene

Drugs & Compounds for TSSC2 Gene

No Compound Related Data Available

Transcripts for TSSC2 Gene

mRNA/cDNA for TSSC2 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSSC2 Gene

No ASD Table

Relevant External Links for TSSC2 Gene

GeneLoc Exon Structure for
TSSC2
ECgene alternative splicing isoforms for
TSSC2

Expression for TSSC2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSSC2 Gene

NURSA nuclear receptor signaling pathways regulating expression of TSSC2 Gene:

TSSC2
genes like me logo Genes that share expression patterns with TSSC2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSSC2 Gene

Orthologs for TSSC2 Gene

Evolution for TSSC2 Gene

ENSEMBL:
Gene Tree for TSSC2 (if available)
TreeFam:
Gene Tree for TSSC2 (if available)

No data available for Orthologs for TSSC2 Gene

Paralogs for TSSC2 Gene

No data available for Paralogs for TSSC2 Gene

Variants for TSSC2 Gene

Sequence variations from dbSNP and Humsavar for TSSC2 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000339146 -- 3,392,013(+) C/T intron_variant
rs1000427130 -- 3,381,931(+) C/T intron_variant
rs1000517426 -- 3,396,882(+) G/A intron_variant
rs1000583982 -- 3,396,122(+) A/G intron_variant
rs1000674245 -- 3,392,972(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TSSC2 Gene

Variant ID Type Subtype PubMed ID
dgv1017n100 CNV gain 25217958
dgv1018n100 CNV loss 25217958
esv2656834 CNV deletion 23128226
esv2659945 CNV deletion 23128226
esv2759796 CNV gain+loss 17122850
esv2760220 CNV gain+loss 21179565
esv2760300 CNV gain 21179565
esv28322 CNV gain+loss 19812545
esv3579246 CNV loss 25503493
esv3625141 CNV loss 21293372
esv3625142 CNV loss 21293372
esv3625143 CNV gain 21293372
esv3891908 CNV loss 25118596
nsv1048955 CNV gain+loss 25217958
nsv1078320 CNV duplication 25765185
nsv1128654 CNV duplication 24896259
nsv428245 CNV gain 18775914
nsv7650 CNV insertion 18451855
nsv971971 CNV duplication 23825009

Additional Variant Information for TSSC2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSSC2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSSC2 Gene

Disorders for TSSC2 Gene

Additional Disease Information for TSSC2

No disorders were found for TSSC2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSSC2 Gene

Publications for TSSC2 Gene

  1. A 2.5-Mb transcript map of a tumor-suppressing subchromosomal transferable fragment from 11p15.5, and isolation and sequence analysis of three novel genes. (PMID: 9403053) Hu RJ … Feinberg AP (Genomics 1997) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for TSSC2 Gene

Sources for TSSC2 Gene

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