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Aliases for TSPYL6 Gene

Aliases for TSPYL6 Gene

  • TSPY-Like 6 2 3
  • TSPY-Like Protein 6 4

External Ids for TSPYL6 Gene

Summaries for TSPYL6 Gene

GeneCards Summary for TSPYL6 Gene

TSPYL6 (TSPY-Like 6) is a Protein Coding gene. An important paralog of this gene is TSPY2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPYL6 Gene

Genomics for TSPYL6 Gene

Genomic Location for TSPYL6 Gene

Start:
54,253,178 bp from pter
End:
54,256,272 bp from pter
Size:
3,095 bases
Orientation:
Minus strand

Genomic View for TSPYL6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSPYL6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPYL6 Gene

Regulatory Elements for TSPYL6 Gene

Proteins for TSPYL6 Gene

  • Protein details for TSPYL6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N831-TSYL6_HUMAN
    Recommended name:
    Testis-specific Y-encoded-like protein 6
    Protein Accession:
    Q8N831
    Secondary Accessions:
    • Q6NUJ3

    Protein attributes for TSPYL6 Gene

    Size:
    410 amino acids
    Molecular mass:
    45874 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSPYL6 Gene

Proteomics data for TSPYL6 Gene at MOPED

Post-translational modifications for TSPYL6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TSPYL6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TSPYL6 Gene

Domains for TSPYL6 Gene

Protein Domains for TSPYL6 Gene

UniProtKB/Swiss-Prot:

TSYL6_HUMAN
Family:
  • Belongs to the nucleosome assembly protein (NAP) family.:
    • Q8N831
genes like me logo Genes that share domains with TSPYL6: view

No data available for Gene Families for TSPYL6 Gene

Function for TSPYL6 Gene

Phenotypes for TSPYL6 Gene

genes like me logo Genes that share phenotypes with TSPYL6: view

miRNA for TSPYL6 Gene

miRTarBase miRNAs that target TSPYL6

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for TSPYL6 Gene

Localization for TSPYL6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TSPYL6 Gene COMPARTMENTS Subcellular localization image for TSPYL6 gene
Compartment Confidence
cytosol 3
nucleus 2
cytoskeleton 1
extracellular 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TSPYL6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TSPYL6: view

Pathways for TSPYL6 Gene

SuperPathways for TSPYL6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TSPYL6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006334 nucleosome assembly IEA --
genes like me logo Genes that share ontologies with TSPYL6: view

No data available for Pathways by source for TSPYL6 Gene

Transcripts for TSPYL6 Gene

mRNA/cDNA for TSPYL6 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSPYL6 Gene

TSPY-like 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSPYL6 Gene

No ASD Table

Relevant External Links for TSPYL6 Gene

GeneLoc Exon Structure for
TSPYL6
ECgene alternative splicing isoforms for
TSPYL6

Expression for TSPYL6 Gene

mRNA expression in normal human tissues for TSPYL6 Gene

mRNA differential expression in normal tissues according to GTEx for TSPYL6 Gene

This gene is overexpressed in Testis (45.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TSPYL6 Gene

SOURCE GeneReport for Unigene cluster for TSPYL6 Gene Hs.620508

genes like me logo Genes that share expressions with TSPYL6: view

Orthologs for TSPYL6 Gene

This gene was present in the common ancestor of animals.

Orthologs for TSPYL6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSPYL6 36
  • 99.51 (n)
  • 99.01 (a)
TSPYL6 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TSPYL6 37
  • 52 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 37
  • 28 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Tspyl3 37
  • 47 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 32 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii TSPY2 37
  • 20 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Set 37
  • 29 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea spr-2 37
  • 24 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9132 37
  • 25 (a)
OneToMany
Species with no ortholog for TSPYL6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TSPYL6 Gene

ENSEMBL:
Gene Tree for TSPYL6 (if available)
TreeFam:
Gene Tree for TSPYL6 (if available)

Paralogs for TSPYL6 Gene

Paralogs for TSPYL6 Gene

Selected SIMAP similar genes for TSPYL6 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for TSPYL6 Gene

genes like me logo Genes that share paralogs with TSPYL6: view

Variants for TSPYL6 Gene

Sequence variations from dbSNP and Humsavar for TSPYL6 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
VAR_035395 -
VAR_035396 -
VAR_035397 -
VAR_035398 -

Structural Variations from Database of Genomic Variants (DGV) for TSPYL6 Gene

Variant ID Type Subtype PubMed ID
esv2720078 CNV Deletion 23290073
nsv457897 CNV Gain 19166990

Relevant External Links for TSPYL6 Gene

HapMap Linkage Disequilibrium report
TSPYL6
Human Gene Mutation Database (HGMD)
TSPYL6

Disorders for TSPYL6 Gene

Relevant External Links for TSPYL6

Genetic Association Database (GAD)
TSPYL6
genes like me logo Genes that share disorders with TSPYL6: view

No data available for UniProtKB/Swiss-Prot for TSPYL6 Gene

Publications for TSPYL6 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for TSPYL6 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate TSPYL6
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for TSPYL6
  • Block miRNA regulation of TSPYL6 using miScript Target Protectors

Sources for TSPYL6 Gene

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