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Aliases for TSPYL4 Gene

Aliases for TSPYL4 Gene

  • TSPY-Like 4 2 3
  • TSPY-Like Protein 4 3 4
  • Testis-Specific Y-Encoded-Like Protein 4 3
  • DJ486I3.2 3
  • KIAA0721 4

External Ids for TSPYL4 Gene

Summaries for TSPYL4 Gene

GeneCards Summary for TSPYL4 Gene

TSPYL4 (TSPY-Like 4) is a Protein Coding gene. An important paralog of this gene is TSPY2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPYL4 Gene

Genomics for TSPYL4 Gene

Genomic Location for TSPYL4 Gene

Start:
116,249,961 bp from pter
End:
116,254,140 bp from pter
Size:
4,180 bases
Orientation:
Minus strand

Genomic View for TSPYL4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSPYL4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPYL4 Gene

Regulatory Elements for TSPYL4 Gene

Proteins for TSPYL4 Gene

  • Protein details for TSPYL4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UJ04-TSYL4_HUMAN
    Recommended name:
    Testis-specific Y-encoded-like protein 4
    Protein Accession:
    Q9UJ04
    Secondary Accessions:
    • B4DYQ2
    • O94828
    • Q96GW8

    Protein attributes for TSPYL4 Gene

    Size:
    414 amino acids
    Molecular mass:
    45126 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA34441.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for TSPYL4 Gene

Proteomics data for TSPYL4 Gene at MOPED

Post-translational modifications for TSPYL4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TSPYL4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TSPYL4 Gene

Domains for TSPYL4 Gene

Protein Domains for TSPYL4 Gene

Suggested Antigen Peptide Sequences for TSPYL4 Gene

Graphical View of Domain Structure for InterPro Entry

Q9UJ04

UniProtKB/Swiss-Prot:

TSYL4_HUMAN
Family:
  • Belongs to the nucleosome assembly protein (NAP) family.:
    • Q9UJ04
genes like me logo Genes that share domains with TSPYL4: view

No data available for Gene Families for TSPYL4 Gene

Function for TSPYL4 Gene

Gene Ontology (GO) - Molecular Function for TSPYL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with TSPYL4: view

miRNA for TSPYL4 Gene

miRTarBase miRNAs that target TSPYL4

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TSPYL4 Gene

Localization for TSPYL4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TSPYL4 Gene COMPARTMENTS Subcellular localization image for TSPYL4 gene
Compartment Confidence
cytosol 3
nucleus 2
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for TSPYL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TSPYL4: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TSPYL4 Gene

Pathways for TSPYL4 Gene

SuperPathways for TSPYL4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TSPYL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006334 nucleosome assembly IEA --
genes like me logo Genes that share ontologies with TSPYL4: view

No data available for Pathways by source for TSPYL4 Gene

Transcripts for TSPYL4 Gene

mRNA/cDNA for TSPYL4 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(134) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSPYL4 Gene

TSPY-like 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSPYL4 Gene

No ASD Table

Relevant External Links for TSPYL4 Gene

GeneLoc Exon Structure for
TSPYL4
ECgene alternative splicing isoforms for
TSPYL4

Expression for TSPYL4 Gene

mRNA expression in normal human tissues for TSPYL4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TSPYL4 Gene

SOURCE GeneReport for Unigene cluster for TSPYL4 Gene Hs.284141

genes like me logo Genes that share expressions with TSPYL4: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TSPYL4 Gene

Orthologs for TSPYL4 Gene

This gene was present in the common ancestor of animals.

Orthologs for TSPYL4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSPYL4 35
  • 99.44 (n)
  • 99.03 (a)
TSPYL4 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TSPYL4 35
  • 85.92 (n)
  • 82.28 (a)
TSPYL4 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TSPYL4 35
  • 77.06 (n)
  • 76.97 (a)
TSPYL4 36
  • 72 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tspyl4 35
  • 81.48 (n)
  • 79.51 (a)
Tspyl4 16
Tspyl4 36
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tspyl4 35
  • 79.56 (n)
  • 77.34 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 35 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii TSPY2 36
  • 19 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Set 36
  • 29 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea spr-2 36
  • 24 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9132 36
  • 23 (a)
OneToMany
Species with no ortholog for TSPYL4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TSPYL4 Gene

ENSEMBL:
Gene Tree for TSPYL4 (if available)
TreeFam:
Gene Tree for TSPYL4 (if available)

Paralogs for TSPYL4 Gene

Paralogs for TSPYL4 Gene

Selected SIMAP similar genes for TSPYL4 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TSPYL4: view

Variants for TSPYL4 Gene

Sequence variations from dbSNP and Humsavar for TSPYL4 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs6755 -- 116,250,092(-) AGTAC(C/T)AGTAG utr-variant-3-prime
rs11789 -- 116,250,954(+) ATGCT(A/G)CACAT utr-variant-3-prime
rs910391 -- 116,254,181(+) CGCGG(G/T)TGACT upstream-variant-2KB
rs989142 -- 116,255,428(+) CAGGA(C/T)TTTTT upstream-variant-2KB
rs1204831 -- 116,249,661(-) TATTA(A/T)TAACT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TSPYL4 Gene

Variant ID Type Subtype PubMed ID
nsv523972 CNV Gain 19592680

Relevant External Links for TSPYL4 Gene

HapMap Linkage Disequilibrium report
TSPYL4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSPYL4 Gene

Disorders for TSPYL4 Gene

No disorders were found for TSPYL4 Gene.

No data available for UniProtKB/Swiss-Prot for TSPYL4 Gene

Publications for TSPYL4 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T. … Ohara O. (DNA Res. 1998) 3 4
  5. Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs. (PMID: 12421765) Nakayama M. … Ohara O. (Genome Res. 2002) 3

Products for TSPYL4 Gene

Sources for TSPYL4 Gene

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