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Aliases for TSPY26P Gene

Subcategory (RNA class) for TSPY26P Gene

lncRNA

Aliases for TSPY26P Gene

  • Testis Specific Protein, Y-Linked 26, Pseudogene 2 3 5
  • TSPY-Like 3 (Pseudogene) 2 3
  • TSPYL3 3 4
  • Testis-Specific Y-Encoded Protein 26 Pseudogene 4
  • TSPY-Like Protein 3 4
  • TSPY-Like 3 2
  • BA392M18.1 3

External Ids for TSPY26P Gene

ORGUL Members for TSPY26P Gene

Previous HGNC Symbols for TSPY26P Gene

  • TSPYL3

Previous GeneCards Identifiers for TSPY26P Gene

  • GC20M030777

Summaries for TSPY26P Gene

GeneCards Summary for TSPY26P Gene

TSPY26P (Testis Specific Protein, Y-Linked 26, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for TSPY26P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPY26P Gene

Genomics for TSPY26P Gene

GeneHancer (GH) Regulatory Elements for TSPY26P Gene

Promoters and enhancers for TSPY26P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I032197 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20.3 -13.8 -13775 12.7 HDGF SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PLAGL2 POFUT1 TSPY26P HCK NOL4L TM9SF4 GC20P032195
GH20I031840 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 23.1 +346.5 346492 6.6 HDGF PKNOX1 SIN3A YBX1 ZNF48 TCF12 GLIS2 ZNF207 ZNF143 ATF7 FOXS1 GC20M031845 ASXL1 MYLK2 POFUT1 TSPY26P TTLL9 TM9SF4 BAK1P1 PLAGL2
GH20I032354 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 17.4 -167.2 -167166 7.3 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ASXL1 TSPY26P ENSG00000236772 TM9SF4 MCTS2P C20orf203 NOL4L ENSG00000277692
GH20I031709 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13 +473.3 473339 14.7 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 BCL2L1 ASXL1 PLAGL2 TM9SF4 MYLK2 COX4I2 TSPY26P LOC105372589 ID1 MCTS2P
GH20I032038 Enhancer 1 Ensembl dbSUPER 30.1 +152.4 152426 0.2 ZNF473 NFIB ZSCAN4 MZF1 ZEB1 ZNF548 FOS ATF7 IKZF2 RUNX3 ASXL1 TSPY26P RSL24D1P6 C20orf203 PLAGL2 POFUT1 PDRG1 LINC00028 BAK1P1 TM9SF4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSPY26P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSPY26P Gene

Genomic Locations for TSPY26P Gene
chr20:32,186,477-32,190,527
(GRCh38/hg38)
Size:
4,051 bases
Orientation:
Minus strand
chr20:30,774,280-30,778,330
(GRCh37/hg19)

Genomic View for TSPY26P Gene

Genes around TSPY26P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPY26P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPY26P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPY26P Gene

Proteins for TSPY26P Gene

  • Protein details for TSPY26P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H489-TSY26_HUMAN
    Recommended name:
    Putative testis-specific Y-encoded-like protein 3
    Protein Accession:
    Q9H489
    Secondary Accessions:
    • Q3MJ63
    • Q3MJ65

    Protein attributes for TSPY26P Gene

    Size:
    355 amino acids
    Molecular mass:
    39573 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSPY26P Gene

Post-translational modifications for TSPY26P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPY26P Gene

Domains & Families for TSPY26P Gene

Protein Domains for TSPY26P Gene

Suggested Antigen Peptide Sequences for TSPY26P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H489

UniProtKB/Swiss-Prot:

TSY26_HUMAN :
  • Belongs to the nucleosome assembly protein (NAP) family.
Family:
  • Belongs to the nucleosome assembly protein (NAP) family.
genes like me logo Genes that share domains with TSPY26P: view

No data available for Gene Families for TSPY26P Gene

Function for TSPY26P Gene

Phenotypes From GWAS Catalog for TSPY26P Gene

Phenotypes for TSPY26P Gene

genes like me logo Genes that share phenotypes with TSPY26P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPY26P Gene

Localization for TSPY26P Gene

Gene Ontology (GO) - Cellular Components for TSPY26P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TSPY26P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for TSPY26P Gene

Pathways & Interactions for TSPY26P Gene

SuperPathways for TSPY26P Gene

No Data Available

Interacting Proteins for TSPY26P Gene

Selected Interacting proteins: Q9H489-TSY26_HUMAN for TSPY26P Gene via IID

Gene Ontology (GO) - Biological Process for TSPY26P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006334 nucleosome assembly IEA --
genes like me logo Genes that share ontologies with TSPY26P: view

No data available for Pathways by source and SIGNOR curated interactions for TSPY26P Gene

Drugs & Compounds for TSPY26P Gene

No Compound Related Data Available

Transcripts for TSPY26P Gene

mRNA/cDNA for TSPY26P Gene

(3) Additional mRNA sequences :
(21) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSPY26P Gene

Testis specific protein, Y-linked 26, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSPY26P Gene

No ASD Table

Relevant External Links for TSPY26P Gene

GeneLoc Exon Structure for
TSPY26P
ECgene alternative splicing isoforms for
TSPY26P

Expression for TSPY26P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSPY26P Gene

Protein differential expression in normal tissues from HIPED for TSPY26P Gene

This gene is overexpressed in Peripheral blood mononuclear cells (41.1), Frontal cortex (16.5), and Colon (11.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TSPY26P Gene



Protein tissue co-expression partners for TSPY26P Gene

NURSA nuclear receptor signaling pathways regulating expression of TSPY26P Gene:

TSPY26P

SOURCE GeneReport for Unigene cluster for TSPY26P Gene:

Hs.647447
genes like me logo Genes that share expression patterns with TSPY26P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPY26P Gene

Orthologs for TSPY26P Gene

Evolution for TSPY26P Gene

ENSEMBL:
Gene Tree for TSPY26P (if available)
TreeFam:
Gene Tree for TSPY26P (if available)

No data available for Orthologs for TSPY26P Gene

Paralogs for TSPY26P Gene

(15) SIMAP similar genes for TSPY26P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TSPY26P: view

No data available for Paralogs for TSPY26P Gene

Variants for TSPY26P Gene

Sequence variations from dbSNP and Humsavar for TSPY26P Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001531272 -- 32,190,520(-) G/T upstream_transcript_variant
rs1001727789 -- 32,190,827(-) G/A upstream_transcript_variant
rs1001863352 -- 32,192,288(-) G/C upstream_transcript_variant
rs1001970390 -- 32,189,380(-) C/T non_coding_transcript_variant
rs1002569789 -- 32,190,890(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TSPY26P Gene

Variant ID Type Subtype PubMed ID
nsv833953 CNV loss 17160897
nsv833954 CNV loss 17160897

Additional Variant Information for TSPY26P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPY26P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPY26P Gene

Disorders for TSPY26P Gene

Additional Disease Information for TSPY26P

No disorders were found for TSPY26P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPY26P Gene

Publications for TSPY26P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TSPY26P Gene

Sources for TSPY26P Gene

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