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Aliases for TSPY26P Gene

Subcategory (RNA class) for TSPY26P Gene

lncRNA

Aliases for TSPY26P Gene

  • Testis Specific Protein, Y-Linked 26, Pseudogene 2 3 5
  • TSPY-Like 3 (Pseudogene) 2 3
  • TSPYL3 3 4
  • Testis-Specific Y-Encoded Protein 26 Pseudogene 4
  • TSPY-Like Protein 3 4
  • TSPY-Like 3 2
  • BA392M18.1 3

External Ids for TSPY26P Gene

ORGUL Members for TSPY26P Gene

Previous HGNC Symbols for TSPY26P Gene

  • TSPYL3

Previous GeneCards Identifiers for TSPY26P Gene

  • GC20M030777

Summaries for TSPY26P Gene

GeneCards Summary for TSPY26P Gene

TSPY26P (Testis Specific Protein, Y-Linked 26, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPY26P Gene

Genomics for TSPY26P Gene

Regulatory Elements for TSPY26P Gene

Enhancers for TSPY26P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G032461 1.7 Ensembl ENCODE dbSUPER 41.2 -283.8 -283804 24.7 CREB3L1 MLX ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF548 MCM3 TSPY26P C20orf203 MCTS2P NOL4L ENSG00000236772 ENSG00000233293 POFUT1 KIF3B EFCAB8 GC20M032477
GH20G031601 2.3 VISTA FANTOM5 ENCODE dbSUPER 17.3 +583.1 583076 11.5 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MYLK2 COX4I2 TSPY26P HM13 RNU6-384P HM13-AS1 MCTS2P PDRG1 ID1 LOC149935
GH20G031840 1.5 Ensembl ENCODE dbSUPER 23.1 +346.5 346493 6.6 HDGF PKNOX1 YBX1 ZNF48 TCF12 GLIS2 ZNF207 ZNF143 FOS DEK MYLK2 TSPY26P BAK1P1 TTLL9 DUSP15 XKR7 PLAGL2 HM13 COX4I2 GC20M031845
GH20G031590 2 FANTOM5 Ensembl ENCODE dbSUPER 17.3 +595.7 595679 8.5 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A YBX1 DMAP1 TSPY26P HM13 PLAGL2 MCTS2P PDRG1 COX4I2 ID1 LOC105372588 RNU6-384P
GH20G032038 1.1 Ensembl dbSUPER 30.1 +152.4 152427 0.2 NFIB ZNF473 ZSCAN4 ZEB1 CBX5 FOS ZNF548 EGR2 MCM3 YY2 TSPY26P C20orf203 BAK1P1 PLAGL2 ENSG00000226239 GC20P032051
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TSPY26P on UCSC Golden Path with GeneCards custom track

Promoters for TSPY26P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000136101 327 801 CTCF HDGF AGO1 ZNF394 ZNF398 EP300 ZFP69B POLR2A ZBTB33 PCBP1

Genomic Location for TSPY26P Gene

Chromosome:
20
Start:
32,186,477 bp from pter
End:
32,190,527 bp from pter
Size:
4,051 bases
Orientation:
Minus strand

Genomic View for TSPY26P Gene

Genes around TSPY26P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPY26P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPY26P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPY26P Gene

Proteins for TSPY26P Gene

  • Protein details for TSPY26P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H489-TSY26_HUMAN
    Recommended name:
    Putative testis-specific Y-encoded-like protein 3
    Protein Accession:
    Q9H489
    Secondary Accessions:
    • Q3MJ63
    • Q3MJ65

    Protein attributes for TSPY26P Gene

    Size:
    355 amino acids
    Molecular mass:
    39573 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSPY26P Gene

Post-translational modifications for TSPY26P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPY26P Gene

Domains & Families for TSPY26P Gene

Protein Domains for TSPY26P Gene

Suggested Antigen Peptide Sequences for TSPY26P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H489

UniProtKB/Swiss-Prot:

TSY26_HUMAN :
  • Belongs to the nucleosome assembly protein (NAP) family.
Family:
  • Belongs to the nucleosome assembly protein (NAP) family.
genes like me logo Genes that share domains with TSPY26P: view

No data available for Gene Families for TSPY26P Gene

Function for TSPY26P Gene

Phenotypes for TSPY26P Gene

genes like me logo Genes that share phenotypes with TSPY26P: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPY26P Gene

Localization for TSPY26P Gene

Gene Ontology (GO) - Cellular Components for TSPY26P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TSPY26P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TSPY26P Gene

Pathways & Interactions for TSPY26P Gene

SuperPathways for TSPY26P Gene

No Data Available

Interacting Proteins for TSPY26P Gene

Selected Interacting proteins: Q9H489-TSY26_HUMAN for TSPY26P Gene via IID

Gene Ontology (GO) - Biological Process for TSPY26P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006334 nucleosome assembly IEA --
genes like me logo Genes that share ontologies with TSPY26P: view

No data available for Pathways by source and SIGNOR curated interactions for TSPY26P Gene

Drugs & Compounds for TSPY26P Gene

No Compound Related Data Available

Transcripts for TSPY26P Gene

mRNA/cDNA for TSPY26P Gene

(3) Additional mRNA sequences :
(21) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSPY26P Gene

Testis specific protein, Y-linked 26, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPY26P Gene

No ASD Table

Relevant External Links for TSPY26P Gene

GeneLoc Exon Structure for
TSPY26P
ECgene alternative splicing isoforms for
TSPY26P

Expression for TSPY26P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSPY26P Gene

Protein differential expression in normal tissues from HIPED for TSPY26P Gene

This gene is overexpressed in Peripheral blood mononuclear cells (41.1), Frontal cortex (16.5), and Colon (11.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TSPY26P Gene



Protein tissue co-expression partners for TSPY26P Gene

NURSA nuclear receptor signaling pathways regulating expression of TSPY26P Gene:

TSPY26P

SOURCE GeneReport for Unigene cluster for TSPY26P Gene:

Hs.647447
genes like me logo Genes that share expression patterns with TSPY26P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPY26P Gene

Orthologs for TSPY26P Gene

Evolution for TSPY26P Gene

ENSEMBL:
Gene Tree for TSPY26P (if available)
TreeFam:
Gene Tree for TSPY26P (if available)

No data available for Orthologs for TSPY26P Gene

Paralogs for TSPY26P Gene

(15) SIMAP similar genes for TSPY26P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TSPY26P: view

No data available for Paralogs for TSPY26P Gene

Variants for TSPY26P Gene

Sequence variations from dbSNP and Humsavar for TSPY26P Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1001531272 -- 32,190,520(+) TTGGC(G/T)CTGGC upstream-variant-2KB
rs1001727789 -- 32,190,827(+) GAGCG(A/G)CAGAT upstream-variant-2KB
rs1001863352 -- 32,192,288(+) AAGAT(C/G)ATTAA downstream-variant-500B, upstream-variant-2KB
rs1001970390 -- 32,189,380(+) AAAAC(C/T)AGCTG nc-transcript-variant
rs1002569789 -- 32,190,890(+) CAGGT(G/T)CTTGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TSPY26P Gene

Variant ID Type Subtype PubMed ID
nsv833953 CNV loss 17160897
nsv833954 CNV loss 17160897

Relevant External Links for TSPY26P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPY26P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPY26P Gene

Disorders for TSPY26P Gene

Relevant External Links for TSPY26P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSPY26P

No disorders were found for TSPY26P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPY26P Gene

Publications for TSPY26P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TSPY26P Gene

Sources for TSPY26P Gene

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