TSPY26P Gene

Aliases
for TSPY26P gene

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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Summaries
for TSPY26P gene

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Genomic Views
for TSPY26P gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:

NC_000020.10  NC_018931.2  NT_011362.11  

Browse SwitchGear Promoter luciferase reporter plasmids

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TSPY26P

TSPY26P Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)


GeneLoc information about chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20M030777:  view genomic region     (about GC identifiers)

Proteins
for TSPY26P gene

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, antibodies-online, and/or GeneTex,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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Explore the universe of human proteins at neXtProt for TSPY26P: NX_Q9H489

TSPY26P Human Recombinant Protein Products:

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	antibodies-online proteins for TSPY26P (2 products)
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TSPY26P Antibody Products:

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	antibodies-online antibodies for TSPY26P (2 products)

TSPY26P Assay Products:

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	Search eBioscience for ELISAs for TSPY26P
	antibodies-online kits for TSPY26P

Domains /
Families
for TSPY26P gene

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GenesLikeMe)
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ProtoNet protein and cluster: Q9H489

Find genes that share domains with TSPY26P           About GenesLikeMe

Function
for TSPY26P gene

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
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Localization
for TSPY26P gene

(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
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Gene Ontology (GO): 1 cellular component term:    About this table

Pathways & Interactions
for TSPY26P gene

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GenesLikeMe, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
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Gene Ontology (GO): 1 biological process term:    About this table

Drugs & Compounds
for TSPY26P gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, Sets of similar genes according to GenesLikeMe)
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Transcripts
for TSPY26P gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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Unigene Cluster for TSPY26P:

miRNA Products:		Block miRNA regulation of human, mouse, rat TSPY26P using miScript Target Protectors
		Search for qRT-PCR Assays for microRNAs that regulate TSPY26P
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Inhib. RNA Products:		OriGene RNAi products in human, mouse, rat for TSPY26P
		Predesigned siRNA for gene silencing in human, mouse, rat TSPY26P

Clone Products:		OriGene clones in human, mouse for TSPY26P OriGene ORF clones in mouse, rat for TSPY26P OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript Custom all cDNA clones Services for TSPY26P
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for TSPY26P
		Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TSPY26P

Primer Products:		OriGene qSTAR qPCR primer pairs in human, mouse for TSPY26P
		Pre-validated RT2 qPCR Primer Assay in human, mouse / rat TSPY26P
		QuantiTect SYBR Green Assays in human, mouse, rat TSPY26P
		QuantiFast Probe-based Assays in human, mouse, rat TSPY26P

Additional mRNA sequence: 

1 DOTS entry:

21 AceView cDNA sequences:

Expression
for TSPY26P gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GenesLikeMe, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TSPY26P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: --

About this image

Neurons
GABAergic Amacrine Cells Inner Nuclear Layer
Eye (Sensory Organs)
GABAergic Amacrine Cells Inner Nuclear Layer

Primer Products:		OriGene qSTAR qPCR primer pairs in human, mouse for TSPY26P
		Pre-validated RT2 qPCR Primer Assay in human, mouse / rat TSPY26P
		QuantiTect SYBR Green Assays in human, mouse, rat TSPY26P
		QuantiFast Probe-based Assays in human, mouse, rat TSPY26P

In Situ Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TSPY26P

Orthologs
for TSPY26P gene

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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Paralogs
for TSPY26P gene

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68,Sets of similar genes according to GenesLikeMe)
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Paralogs for TSPY26P gene

15 SIMAP similar genes for TSPY26P using alignment to 1 protein entry:     TSY26_HUMAN:

LOC728395    SET    TSPYL4    TSPYL    TSPYL1    TSPYL6

TSPY8    TSPY3    TSPY1    TSPY6P    TSPY2    TSPY10

TSPY4    TSPYL2    TSPYL5

Find genes that share paralogs with TSPY26P           About GenesLikeMe

Genomic Variants
for TSPY26P gene

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TSPY26P (see all 45)    About this table

Genomic Data					Transcription Related Data				Allele Frequencies
SNP ID	Valid	Clinical significance	Chr 20 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
-1st2nd3rd	-1st2nd3rd	-1st2nd3rd	-1st2nd3rd	--	--	--	-1st2nd3rd	--	--	-1st2nd3rd	-1st2nd3rd	-1st2nd3rd
rs1419164291,2		--	27565072(+)	GAGCAC/TGACCA	1	--	ds5001		0	--	--	--	--
rs1165587961,2	C	--	27565154(+)	TGACTG/TGTGGG	1	--	ds5001		0	--	--	--	--
rs60612091,2	C,F	--	27565216(+)	AAGATT/CATGGC	1	--	ds5001		6		NA WA CSA	128
rs1918071991,2		--	27565385(+)	GAGTGA/CACAGA	1	--	ds5001		0	--	--	--	--
rs1147670451,2	F	--	27565441(+)	CACCAT/CGGGCC	1	--	ds5001		1		WA	118
rs1400534561,2	C	--	27565464(+)	CGCCAA/CCCGTA	1	--	nc-transcript-variant		0	--	--	--	--
rs1830592301,2		--	27565491(+)	TTATGA/TAGGCC	1	--	nc-transcript-variant		0	--	--	--	--
rs60612101,2	C	--	27565659(+)	GGCAAC/TCCTGT	1	--	nc-transcript-variant		0	--	--	--	--
rs38139221,2,,4	C,F,H	--	27565847(-)	CAACCC/ACTACT	1	--	nc-transcript-variant		23		EA NS NA CSA WA	4036
rs1160739831,2	C,F	--	27566022(+)	GATGAT/CGAAGC	1	--	nc-transcript-variant		1		WA	118

HapMap Linkage Disequilibrium report for TSPY26P (30774280 - 30778330 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for TSPY26P:    About this table    

Variant ID	Type	Subtype	PubMed ID
nsv833954	CNV	Loss	17160897
nsv833953	CNV	Loss	17160897

Site Specific Mutation Identification with PCR Assays

Search QIAGEN SeqTarget long-range PCR primers for resequencing TSPY26P

DNA2.0 Custom Variant and Variant Library Synthesis for TSPY26P

Disorders / Diseases
for TSPY26P gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB, Sets of similar genes according to GenesLikeMe)
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Publications
for TSPY26P gene

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for TSPY26P gene integrated from 10 sources: (articles sorted by number of sources associating them with TSPY26P)

Utopia: connect your pdf to the dynamic world of online information

1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S.... Malek J. (Genome Res. 2004)
2. The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)^{1, 2} Deloukas P....Rogers J. (Nature 2001)
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

External Searches for TSPY26P gene

Genome Databases showing TSPY26P gene

Other Databases showing TSPY26P gene

Specialized Databases showing TSPY26P gene

Products
for TSPY26P gene

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, GeneTex, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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