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TSPY26P Gene(Pseudogene)

Testis Specific Protein, Y-Linked 26, Pseudogene

GCID:
GC20M032186
GIFtS:
28
Genes Participants
UDN Logo

Aliases for TSPY26P Gene

Subcategory (RNA class) for TSPY26P Gene

lncRNA

Aliases for TSPY26P Gene

  • Testis Specific Protein, Y-Linked 26, Pseudogene 2 3 5
  • TSPY-Like 3 (Pseudogene) 2 3
  • TSPYL3 3 4
  • Testis-Specific Y-Encoded Protein 26 Pseudogene 4
  • TSPY-Like Protein 3 4
  • TSPY-Like 3 2
  • BA392M18.1 3

External Ids for TSPY26P Gene

ORGUL Members for TSPY26P Gene

Previous HGNC Symbols for TSPY26P Gene

  • TSPYL3

Previous GeneCards Identifiers for TSPY26P Gene

  • GC20M030777

Summaries for TSPY26P Gene

GeneCards Summary for TSPY26P Gene

TSPY26P (Testis Specific Protein, Y-Linked 26, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPY26P Gene

Genomics for TSPY26P Gene

Products:

  1. Regulatory Element

Regulatory Elements for TSPY26P Gene

Enhancers for TSPY26P Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TSPY26P on UCSC Golden Path with GeneCards custom track

Promoters for TSPY26P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TSPY26P on UCSC Golden Path with GeneCards custom track

Genomic Location for TSPY26P Gene

Chromosome:
20
Start:
32,186,477 bp from pter
End:
32,190,527 bp from pter
Size:
4,051 bases
Orientation:
Minus strand

Genomic View for TSPY26P Gene

Genes around TSPY26P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPY26P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPY26P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TSPY26P Gene

Proteins for TSPY26P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for TSPY26P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H489-TSY26_HUMAN
    Recommended name:
    Putative testis-specific Y-encoded-like protein 3
    Protein Accession:
    Q9H489
    Secondary Accessions:
    • Q3MJ63
    • Q3MJ65

    Protein attributes for TSPY26P Gene

    Size:
    355 amino acids
    Molecular mass:
    39573 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSPY26P Gene

Proteomics data for TSPY26P Gene at MOPED

Protein Expression for TSPY26P Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for TSPY26P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPY26P Gene

Domains & Families for TSPY26P Gene

Protein Domains for TSPY26P Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for TSPY26P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H489

UniProtKB/Swiss-Prot:

TSY26_HUMAN :
  • Belongs to the nucleosome assembly protein (NAP) family.
Family:
  • Belongs to the nucleosome assembly protein (NAP) family.
genes like me logo Genes that share domains with TSPY26P: view

No data available for Gene Families for TSPY26P Gene

Function for TSPY26P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for TSPY26P Gene

GenomeRNAi human phenotypes for TSPY26P:
genes like me logo Genes that share phenotypes with TSPY26P: view

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPY26P Gene

Localization for TSPY26P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSPY26P Gene

Pathways & Interactions for TSPY26P Gene

SuperPathways for TSPY26P Gene

PathCards logoMore details on SuperPathways for TSPY26P
No Data Available

Interacting Proteins for TSPY26P Gene

Gene Ontology (GO) - Biological Process for TSPY26P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSPY26P Gene

Drugs & Compounds for TSPY26P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TSPY26P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for TSPY26P Gene

(3) Additional mRNA sequences :
(21) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSPY26P Gene

Testis specific protein, Y-linked 26, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPY26P Gene

No ASD Table

Relevant External Links for TSPY26P Gene

GeneLoc Exon Structure for
TSPY26P
ECgene alternative splicing isoforms for
TSPY26P

Expression for TSPY26P Gene

Products:

  1. Primer

mRNA expression in normal human tissues for TSPY26P Gene

mRNA expression in normal human tissues for TSPY26P Gene
mRNA expression by BioGPS for TSPY26P GenemRNA expression by GTEx for TSPY26P Gene

Protein differential expression in normal tissues from HIPED for TSPY26P Gene

This gene is overexpressed in Peripheral blood mononuclear cells (41.1), Frontal cortex (16.5), and Colon (11.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TSPY26P Gene



SOURCE GeneReport for Unigene cluster for TSPY26P Gene Hs.647447

genes like me logo Genes that share expression patterns with TSPY26P: view

Protein tissue co-expression partners for TSPY26P Gene

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TSPY26P Gene

Orthologs for TSPY26P Gene

Evolution for TSPY26P Gene

ENSEMBL:
Gene Tree for TSPY26P (if available)
TreeFam:
Gene Tree for TSPY26P (if available)

No data available for Orthologs for TSPY26P Gene

Paralogs for TSPY26P Gene

(15) SIMAP similar genes for TSPY26P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TSPY26P: view

No data available for Paralogs for TSPY26P Gene

Variants for TSPY26P Gene

Sequence variations from dbSNP and Humsavar for TSPY26P Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs3813922 - 32,189,533(-) CAACC(A/C)CTACT nc-transcript-variant
rs3746604 -- 32,191,327(+) CCTCA(C/T)CTGAG upstream-variant-2KB
rs6061209 -- 32,188,902(+) AAGAT(C/T)ATGGC downstream-variant-500B
rs6061210 -- 32,189,345(+) GGCAA(C/T)CCTGT nc-transcript-variant
rs6061211 -- 32,190,507(+) GTCCC(C/T)ACATT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TSPY26P Gene

Variant ID Type Subtype PubMed ID
nsv833953 CNV Loss 17160897
nsv833954 CNV Loss 17160897

Relevant External Links for TSPY26P Gene

HapMap Linkage Disequilibrium report
TSPY26P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPY26P Gene

Disorders for TSPY26P Gene

Relevant External Links for TSPY26P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSPY26P

No disorders were found for TSPY26P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPY26P Gene

Publications for TSPY26P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3

Products for TSPY26P Gene

Sources for TSPY26P Gene

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