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Aliases for TSPY26P Gene

Subcategory (RNA class) for TSPY26P Gene

lncRNA

Aliases for TSPY26P Gene

  • Testis Specific Protein, Y-Linked 26, Pseudogene 2 3 5
  • TSPY-Like 3 (Pseudogene) 2 3
  • TSPYL3 3 4
  • Testis-Specific Y-Encoded Protein 26 Pseudogene 4
  • TSPY-Like Protein 3 4
  • TSPY-Like 3 2
  • BA392M18.1 3

External Ids for TSPY26P Gene

ORGUL Members for TSPY26P Gene

Previous HGNC Symbols for TSPY26P Gene

  • TSPYL3

Previous GeneCards Identifiers for TSPY26P Gene

  • GC20M030777

Summaries for TSPY26P Gene

GeneCards Summary for TSPY26P Gene

TSPY26P (Testis Specific Protein, Y-Linked 26, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPY26P Gene

Genomics for TSPY26P Gene

Regulatory Elements for TSPY26P Gene

Enhancers for TSPY26P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F032197 1.1 FANTOM5 ENCODE 20.3 -13.8 -13776 12.7 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 ZNF143 TSPY26P HCK EFCAB8 PLAGL2 POFUT1 NOL4L TM9SF4 GC20P032195
GH20F032354 1.2 ENCODE 17.4 -167.2 -167166 7.3 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC POFUT1 TSPY26P REM1 ENSG00000236772 DEFB124 MCTS2P C20orf203 ID1 NOL4L ASXL1
GH20F031894 1.5 FANTOM5 Ensembl ENCODE 17.3 +295.2 295194 1.5 HDGF ATF1 ZFP64 ZNF493 ZNF133 RFX5 ZNF302 ZNF354C ZNF143 CREM MCTS2P TSPY26P POFUT1 PLAGL2 REM1 C20orf203 DUSP15 MYLK2 RNU1-94P
GH20F031601 1.8 VISTA FANTOM5 ENCODE 17.3 +583.1 583076 11.5 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D MCTS2P MYLK2 COX4I2 TSPY26P HM13 RNU6-384P HM13-AS1 KIF3B DEFB124 ID1
GH20F031590 1.2 FANTOM5 Ensembl ENCODE 17.3 +595.7 595679 8.5 PKNOX1 MLX ZFP64 ARID4B SIN3A YBX1 DMAP1 YY1 ZNF143 FOS TSPY26P HM13 PLAGL2 MCTS2P COX4I2 ID1 LOC105372588 RNU6-384P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TSPY26P on UCSC Golden Path with GeneCards custom track

Promoters for TSPY26P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000119254 327 1201 HDGF CTCF ZFP69B POLR2A ZBTB33 ZBTB26

Genomic Location for TSPY26P Gene

Chromosome:
20
Start:
32,186,477 bp from pter
End:
32,190,527 bp from pter
Size:
4,051 bases
Orientation:
Minus strand

Genomic View for TSPY26P Gene

Genes around TSPY26P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPY26P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPY26P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPY26P Gene

Proteins for TSPY26P Gene

  • Protein details for TSPY26P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H489-TSY26_HUMAN
    Recommended name:
    Putative testis-specific Y-encoded-like protein 3
    Protein Accession:
    Q9H489
    Secondary Accessions:
    • Q3MJ63
    • Q3MJ65

    Protein attributes for TSPY26P Gene

    Size:
    355 amino acids
    Molecular mass:
    39573 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSPY26P Gene

Post-translational modifications for TSPY26P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPY26P Gene

Domains & Families for TSPY26P Gene

Protein Domains for TSPY26P Gene

Suggested Antigen Peptide Sequences for TSPY26P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H489

UniProtKB/Swiss-Prot:

TSY26_HUMAN :
  • Belongs to the nucleosome assembly protein (NAP) family.
Family:
  • Belongs to the nucleosome assembly protein (NAP) family.
genes like me logo Genes that share domains with TSPY26P: view

No data available for Gene Families for TSPY26P Gene

Function for TSPY26P Gene

Phenotypes for TSPY26P Gene

genes like me logo Genes that share phenotypes with TSPY26P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPY26P Gene

Localization for TSPY26P Gene

Gene Ontology (GO) - Cellular Components for TSPY26P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TSPY26P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TSPY26P Gene

Pathways & Interactions for TSPY26P Gene

SuperPathways for TSPY26P Gene

No Data Available

Interacting Proteins for TSPY26P Gene

Selected Interacting proteins: Q9H489-TSY26_HUMAN for TSPY26P Gene via IID

Gene Ontology (GO) - Biological Process for TSPY26P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006334 nucleosome assembly IEA --
genes like me logo Genes that share ontologies with TSPY26P: view

No data available for Pathways by source and SIGNOR curated interactions for TSPY26P Gene

Transcripts for TSPY26P Gene

mRNA/cDNA for TSPY26P Gene

(3) Additional mRNA sequences :
(21) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSPY26P Gene

Testis specific protein, Y-linked 26, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSPY26P Gene

No ASD Table

Relevant External Links for TSPY26P Gene

GeneLoc Exon Structure for
TSPY26P
ECgene alternative splicing isoforms for
TSPY26P

Expression for TSPY26P Gene

mRNA expression in normal human tissues for TSPY26P Gene

Protein differential expression in normal tissues from HIPED for TSPY26P Gene

This gene is overexpressed in Peripheral blood mononuclear cells (41.1), Frontal cortex (16.5), and Colon (11.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TSPY26P Gene



Protein tissue co-expression partners for TSPY26P Gene

NURSA nuclear receptor signaling pathways regulating expression of TSPY26P Gene:

TSPY26P

SOURCE GeneReport for Unigene cluster for TSPY26P Gene:

Hs.647447
genes like me logo Genes that share expression patterns with TSPY26P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TSPY26P Gene

Orthologs for TSPY26P Gene

Evolution for TSPY26P Gene

ENSEMBL:
Gene Tree for TSPY26P (if available)
TreeFam:
Gene Tree for TSPY26P (if available)

No data available for Orthologs for TSPY26P Gene

Paralogs for TSPY26P Gene

(15) SIMAP similar genes for TSPY26P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TSPY26P: view

No data available for Paralogs for TSPY26P Gene

Variants for TSPY26P Gene

Sequence variations from dbSNP and Humsavar for TSPY26P Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs112097139 -- 32,191,815(+) GGACA(A/G)CCAGC upstream-variant-2KB
rs112429277 -- 32,192,044(+) GTCTG(C/G)AATCC downstream-variant-500B, upstream-variant-2KB
rs114767045 -- 32,189,127(+) CACCA(C/T)GGGCC downstream-variant-500B
rs116073983 -- 32,189,708(+) GATGA(C/T)GAAGC nc-transcript-variant
rs116558796 -- 32,188,840(+) TGACT(G/T)GTGGG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TSPY26P Gene

Variant ID Type Subtype PubMed ID
nsv833953 CNV loss 17160897
nsv833954 CNV loss 17160897

Relevant External Links for TSPY26P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPY26P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPY26P Gene

Disorders for TSPY26P Gene

Relevant External Links for TSPY26P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSPY26P

No disorders were found for TSPY26P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPY26P Gene

Publications for TSPY26P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TSPY26P Gene

Sources for TSPY26P Gene

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