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Aliases for TSPY26P Gene

Subcategory (RNA class) for TSPY26P Gene

lncRNA

Aliases for TSPY26P Gene

  • Testis Specific Protein, Y-Linked 26, Pseudogene 2 3
  • TSPY-Like 3 (Pseudogene) 2 3
  • TSPYL3 3 4
  • Testis-Specific Y-Encoded Protein 26 Pseudogene 4
  • TSPY-Like Protein 3 4
  • TSPY-Like 3 2
  • BA392M18.1 3

External Ids for TSPY26P Gene

ORGUL Members for TSPY26P Gene

Previous HGNC Symbols for TSPY26P Gene

  • TSPYL3

Previous GeneCards Identifiers for TSPY26P Gene

  • GC20M030777

Summaries for TSPY26P Gene

GeneCards Summary for TSPY26P Gene

TSPY26P (Testis Specific Protein, Y-Linked 26, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPY26P Gene

Genomics for TSPY26P Gene

Genomic Location for TSPY26P Gene

Start:
32,186,477 bp from pter
End:
32,190,527 bp from pter
Size:
4,051 bases
Orientation:
Minus strand

Genomic View for TSPY26P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSPY26P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPY26P Gene

No data available for Regulatory Elements for TSPY26P Gene

Proteins for TSPY26P Gene

  • Protein details for TSPY26P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H489-TSY26_HUMAN
    Recommended name:
    Putative testis-specific Y-encoded-like protein 3
    Protein Accession:
    Q9H489
    Secondary Accessions:
    • Q3MJ63
    • Q3MJ65

    Protein attributes for TSPY26P Gene

    Size:
    355 amino acids
    Molecular mass:
    39573 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSPY26P Gene

Proteomics data for TSPY26P Gene at MOPED

Post-translational modifications for TSPY26P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPY26P Gene

Domains for TSPY26P Gene

Protein Domains for TSPY26P Gene

Suggested Antigen Peptide Sequences for TSPY26P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H489

UniProtKB/Swiss-Prot:

TSY26_HUMAN :
  • Q9H489
Family:
  • Belongs to the nucleosome assembly protein (NAP) family.
genes like me logo Genes that share domains with TSPY26P: view

No data available for Gene Families for TSPY26P Gene

Function for TSPY26P Gene

Phenotypes for TSPY26P Gene

GenomeRNAi human phenotypes for TSPY26P:
genes like me logo Genes that share phenotypes with TSPY26P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TSPY26P Gene

Localization for TSPY26P Gene

Gene Ontology (GO) - Cellular Components for TSPY26P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TSPY26P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TSPY26P Gene

Pathways for TSPY26P Gene

SuperPathways for TSPY26P Gene

No Data Available

Interacting Proteins for TSPY26P Gene

Gene Ontology (GO) - Biological Process for TSPY26P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006334 nucleosome assembly IEA --
genes like me logo Genes that share ontologies with TSPY26P: view

No data available for Pathways by source for TSPY26P Gene

Transcripts for TSPY26P Gene

mRNA/cDNA for TSPY26P Gene

(21) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSPY26P Gene

Testis specific protein, Y-linked 26, pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TSPY26P

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TSPY26P
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPY26P Gene

No ASD Table

Relevant External Links for TSPY26P Gene

GeneLoc Exon Structure for
TSPY26P
ECgene alternative splicing isoforms for
TSPY26P

Expression for TSPY26P Gene

mRNA expression in normal human tissues for TSPY26P Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TSPY26P Gene

SOURCE GeneReport for Unigene cluster for TSPY26P Gene Hs.647447

genes like me logo Genes that share expressions with TSPY26P: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TSPY26P Gene

Orthologs for TSPY26P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for TSPY26P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Tspyl3 16
Species with no ortholog for TSPY26P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TSPY26P Gene

ENSEMBL:
Gene Tree for TSPY26P (if available)
TreeFam:
Gene Tree for TSPY26P (if available)

Paralogs for TSPY26P Gene

Selected SIMAP similar genes for TSPY26P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TSPY26P: view

No data available for Paralogs for TSPY26P Gene

Variants for TSPY26P Gene

Sequence variations from dbSNP and Humsavar for TSPY26P Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs3746604 -- 32,191,327(+) CCTCA(C/T)CTGAG upstream-variant-2KB
rs6058544 -- 32,190,363(+) GTGGG(A/C)GGAAG upstream-variant-2KB
rs6061209 -- 32,188,902(+) AAGAT(C/T)ATGGC downstream-variant-500B
rs6061210 -- 32,189,345(+) GGCAA(C/T)CCTGT nc-transcript-variant
rs6061211 -- 32,190,507(+) GTCCC(C/T)ACATT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TSPY26P Gene

Variant ID Type Subtype PubMed ID
nsv833953 CNV Loss 17160897
nsv833954 CNV Loss 17160897

Relevant External Links for TSPY26P Gene

HapMap Linkage Disequilibrium report
TSPY26P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSPY26P Gene

Disorders for TSPY26P Gene

No disorders were found for TSPY26P Gene.

No data available for UniProtKB/Swiss-Prot for TSPY26P Gene

Publications for TSPY26P Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TSPY26P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TSPY26P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TSPY26P
    • Block miRNA regulation of TSPY26P using miScript Target Protectors

    Sources for TSPY26P Gene

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