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Aliases for TSPOAP1-AS1 Gene

Subcategory (RNA class) for TSPOAP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TSPOAP1-AS1 Gene

  • TSPOAP1 Antisense RNA 1 2 3 5
  • BZRAP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • BZRAP1-AS1 3

External Ids for TSPOAP1-AS1 Gene

Previous HGNC Symbols for TSPOAP1-AS1 Gene

  • BZRAP1-AS1

Summaries for TSPOAP1-AS1 Gene

GeneCards Summary for TSPOAP1-AS1 Gene

TSPOAP1-AS1 (TSPOAP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPOAP1-AS1 Gene

Genomics for TSPOAP1-AS1 Gene

Regulatory Elements for TSPOAP1-AS1 Gene

Enhancers for TSPOAP1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G058326 0.9 Ensembl dbSUPER 0.7 +0.7 651 0.6 CTCF AGO1 REST ZBTB7A POLR2A GLIS1 ZNF600 ZBTB26 MYC HES1 SUPT4H1 RNF43 TSPOAP1 TSPOAP1-AS1
GH17G058328 0.8 ENCODE dbSUPER 0.7 +1.6 1625 0.2 PTBP1 POLR2A TBL1XR1 AGO1 REST SUPT5H TSPOAP1 TSPOAP1-AS1
GH17G058317 1.3 Ensembl ENCODE dbSUPER 0.4 -7.5 -7507 1.3 ELF3 HDGF PKNOX1 ARID4B SIN3A ZNF48 ZBTB7B RAD21 ZNF143 CREM SUPT4H1 RNF43 TSPOAP1-AS1 GC17M058304
GH17G058324 0.7 ENCODE 0.7 -0.5 -516 0.2 CTCF MXI1 AGO1 GLIS2 POLR2A ZBTB48 PATZ1 ZBTB20 EZH2 SMAD5 SUPT4H1 RNF43 TSPOAP1-AS1 GC17M058304
GH17G058325 0.7 ENCODE 0.7 0.0 -36 0.2 MXI1 RFX1 SMAD5 AGO1 ZBED1 CHD1 BMI1 RAD21 ZKSCAN1 ZNF579 SUPT4H1 RNF43 TSPOAP1-AS1 GC17M058304
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TSPOAP1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TSPOAP1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000096243 -850 801 CTCF MXI1 KLF1 AGO1 FOXK2 ZBTB48 POLR2A PATZ1 BCLAF1 ZBTB20

Genomic Location for TSPOAP1-AS1 Gene

Chromosome:
17
Start:
58,325,450 bp from pter
End:
58,415,766 bp from pter
Size:
90,317 bases
Orientation:
Plus strand

Genomic View for TSPOAP1-AS1 Gene

Genes around TSPOAP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPOAP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPOAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPOAP1-AS1 Gene

Proteins for TSPOAP1-AS1 Gene

Post-translational modifications for TSPOAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPOAP1-AS1 Gene

Domains & Families for TSPOAP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSPOAP1-AS1 Gene

Function for TSPOAP1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPOAP1-AS1 Gene

Localization for TSPOAP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSPOAP1-AS1 Gene

Pathways & Interactions for TSPOAP1-AS1 Gene

SuperPathways for TSPOAP1-AS1 Gene

No Data Available

Interacting Proteins for TSPOAP1-AS1 Gene

Gene Ontology (GO) - Biological Process for TSPOAP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSPOAP1-AS1 Gene

Drugs & Compounds for TSPOAP1-AS1 Gene

No Compound Related Data Available

Transcripts for TSPOAP1-AS1 Gene

mRNA/cDNA for TSPOAP1-AS1 Gene

(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TSPOAP1-AS1 Gene

No ASD Table

Relevant External Links for TSPOAP1-AS1 Gene

GeneLoc Exon Structure for
TSPOAP1-AS1
ECgene alternative splicing isoforms for
TSPOAP1-AS1

Expression for TSPOAP1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPOAP1-AS1 Gene

Orthologs for TSPOAP1-AS1 Gene

Evolution for TSPOAP1-AS1 Gene

ENSEMBL:
Gene Tree for TSPOAP1-AS1 (if available)
TreeFam:
Gene Tree for TSPOAP1-AS1 (if available)

No data available for Orthologs for TSPOAP1-AS1 Gene

Paralogs for TSPOAP1-AS1 Gene

No data available for Paralogs for TSPOAP1-AS1 Gene

Variants for TSPOAP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TSPOAP1-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000021468 -- 58,324,445(+) GTCCC(A/C)GCTCT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000174411 -- 58,341,965(+) AAAAT(A/G)AAAGA intron-variant
rs1000187834 -- 58,348,264(+) TAAGC(A/G)TTTTT intron-variant
rs1000195216 -- 58,350,298(+) CACGA(A/G)GTCAG intron-variant
rs1000416541 -- 58,350,809(+) CCAGC(A/G)TGAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSPOAP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2716078 CNV deletion 23290073
nsv457860 CNV loss 19166990
nsv470593 CNV loss 18288195
nsv509663 CNV insertion 20534489
nsv517229 CNV gain+loss 19592680
nsv575799 CNV loss 21841781
nsv575800 CNV gain 21841781
nsv819948 CNV loss 19587683
nsv952349 CNV deletion 24416366

Relevant External Links for TSPOAP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPOAP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPOAP1-AS1 Gene

Disorders for TSPOAP1-AS1 Gene

Relevant External Links for TSPOAP1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSPOAP1-AS1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSPOAP1-AS1

No disorders were found for TSPOAP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPOAP1-AS1 Gene

Publications for TSPOAP1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TSPOAP1-AS1 Gene

Sources for TSPOAP1-AS1 Gene

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