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Aliases for TSPEAR-AS1 Gene

Subcategory (RNA class) for TSPEAR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TSPEAR-AS1 Gene

  • TSPEAR Antisense RNA 1 2 3 5
  • TSPEAR Antisense RNA 1 (Non-Protein Coding) 2 3
  • C21orf31 3

External Ids for TSPEAR-AS1 Gene

Previous GeneCards Identifiers for TSPEAR-AS1 Gene

  • GC21P045927
  • GC21P045936
  • GC21P045942
  • GC21P045955
  • GC21P045965

Summaries for TSPEAR-AS1 Gene

GeneCards Summary for TSPEAR-AS1 Gene

TSPEAR-AS1 (TSPEAR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPEAR-AS1 Gene

Genomics for TSPEAR-AS1 Gene

Regulatory Elements for TSPEAR-AS1 Gene

Enhancers for TSPEAR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F044482 0.8 ENCODE 12 -23.2 -23162 0.3 ELF3 TBP ATF1 ARID4B DMAP1 THRB ZSCAN9 DNMT3B RARA YY1 TSPEAR-AS1 TSPEAR-AS2 LINC01424 UBE2G2 GC21M045142 PIR49959 PIR43206
GH21F044479 0.2 Ensembl 11.3 -26.3 -26344 0.2 CTCF ATF1 ETV1 ZNF2 RAD21 ZFHX2 ZNF143 SMC3 ZNF600 KLF8 LRRC3 LRRC3-AS1 TSPEAR-AS1 TSPEAR-AS2 KRTAP10-1 KRTAP10-2 PIR36745 PIR46087
GH21F044789 0.5 ENCODE 10.8 +284.3 284277 1.5 CTCF JUNB NFE2 REST RAD21 THRB SUMO3 TSPEAR-AS1 TSPEAR-AS2 KRTAP12-1 IMMTP1 KRTAP10-2 KRTAP10-1 UBE2G2 GC21M045249
GH21F044791 1.3 Ensembl ENCODE 10.8 +286.9 286918 2.9 CBX3 KLF17 ZNF48 RAD21 YY1 ZNF143 ZNF548 ZNF654 REST PPARG UBE2G2 ENSG00000215447 SUMO3 ENSG00000184441 TSPEAR-AS1 TSPEAR-AS2 KRTAP10-1 KRTAP10-2 PTTG1IP IMMTP1
GH21F044374 1 Ensembl ENCODE 10.7 -130.8 -130844 1.2 MAX ETV6 MYC SPI1 TRPM2 TSPEAR-AS1 C21orf2 PIR42451 TRPM2-AS
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TSPEAR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TSPEAR-AS1 Gene

44,506,044 bp from pter
44,516,575 bp from pter
10,532 bases
Plus strand

Genomic View for TSPEAR-AS1 Gene

Genes around TSPEAR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPEAR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPEAR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPEAR-AS1 Gene

Proteins for TSPEAR-AS1 Gene

Post-translational modifications for TSPEAR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPEAR-AS1 Gene

Domains & Families for TSPEAR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSPEAR-AS1 Gene

Function for TSPEAR-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPEAR-AS1 Gene

Localization for TSPEAR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSPEAR-AS1 Gene

Pathways & Interactions for TSPEAR-AS1 Gene

SuperPathways for TSPEAR-AS1 Gene

No Data Available

Interacting Proteins for TSPEAR-AS1 Gene

Gene Ontology (GO) - Biological Process for TSPEAR-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TSPEAR-AS1 Gene

Transcripts for TSPEAR-AS1 Gene


(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TSPEAR-AS1 Gene

No ASD Table

Relevant External Links for TSPEAR-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TSPEAR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TSPEAR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TSPEAR-AS1 Gene

This gene is overexpressed in Spleen (x5.8) and Liver (x4.3).
genes like me logo Genes that share expression patterns with TSPEAR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TSPEAR-AS1 Gene

Orthologs for TSPEAR-AS1 Gene

Evolution for TSPEAR-AS1 Gene

Gene Tree for TSPEAR-AS1 (if available)
Gene Tree for TSPEAR-AS1 (if available)

No data available for Orthologs for TSPEAR-AS1 Gene

Paralogs for TSPEAR-AS1 Gene

No data available for Paralogs for TSPEAR-AS1 Gene

Variants for TSPEAR-AS1 Gene

Sequence variations from dbSNP and Humsavar for TSPEAR-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs781882860 Likely benign 44,504,767(+) GCCTC(A/G)GCAGC intron-variant, upstream-variant-2KB
rs782790512 Uncertain significance 44,504,850(+) ATCTT(C/T)TCCCA upstream-variant-2KB, reference, missense
rs112006551 Benign 44,504,800(+) TTCAC(A/C)GAGAA upstream-variant-2KB, reference, synonymous-codon
rs115847549 Benign 44,509,309(+) ACATC(A/G)TAGCT nc-transcript-variant, reference, synonymous-codon
rs138358770 Benign 44,504,857(+) CCCAC(C/T)GAGAA upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for TSPEAR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2723638 CNV deletion 23290073
esv2723670 CNV deletion 23290073
esv33817 CNV loss 17666407
nsv1055163 CNV gain 25217958
nsv1058359 CNV gain 25217958
nsv587802 CNV loss 21841781
nsv587803 CNV loss 21841781
nsv834109 CNV loss 17160897
nsv953646 CNV deletion 24416366

Relevant External Links for TSPEAR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPEAR-AS1 Gene

Disorders for TSPEAR-AS1 Gene

Relevant External Links for TSPEAR-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TSPEAR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPEAR-AS1 Gene

Publications for TSPEAR-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 64

Products for TSPEAR-AS1 Gene

Sources for TSPEAR-AS1 Gene

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