Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TSPAN9-IT1 Gene

Subcategory (RNA class) for TSPAN9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TSPAN9-IT1 Gene

  • TSPAN9 Intronic Transcript 1 2 3 5
  • TSPAN9 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TSPAN9-IT1 Gene

Previous GeneCards Identifiers for TSPAN9-IT1 Gene

  • GC00U933783
  • GC12P003259

Summaries for TSPAN9-IT1 Gene

GeneCards Summary for TSPAN9-IT1 Gene

TSPAN9-IT1 (TSPAN9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN9-IT1 Gene

Genomics for TSPAN9-IT1 Gene

Regulatory Elements for TSPAN9-IT1 Gene

Enhancers for TSPAN9-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G003148 1.2 Ensembl ENCODE dbSUPER 0.7 +0.8 819 5.1 CTCF NFIB TEAD4 FEZF1 RAD21 ZIC2 ZFHX2 GATA2 HNF4G ZNF600 TSPAN9 TSPAN9-IT1 ENSG00000275850
GH12G003167 1.4 Ensembl ENCODE dbSUPER 0.4 +20.0 19990 4.3 INSM2 SIN3A KLF17 ZNF2 EGR1 ZNF366 ZSCAN5C FOS EGR2 SP3 TSPAN9 ENSG00000275850 TSPAN9-IT1
GH12G003144 0.7 dbSUPER 0.7 -4.6 -4618 1.9 ZNF263 PKNOX1 MAX ZIC2 RAD21 ZNF585B GLIS1 SCRT2 HNF4A EGR2 TSPAN9 TSPAN9-IT1 ENSG00000278469
GH12G003132 1.2 Ensembl ENCODE dbSUPER 0.4 -16.7 -16656 1.3 CTCF KLF1 RAD21 ZNF48 ZIC2 TEAD3 POLR2A HNF4G GATAD2A MAZ TSPAN9 ENSG00000278469 TSPAN9-IT1
GH12G003158 1.1 Ensembl ENCODE dbSUPER 0.4 +9.3 9349 1.8 OSR2 GLIS1 SCRT2 FOXP2 CEBPG ZIC2 ZNF423 TSPAN9 TSPAN9-IT1 ENSG00000275850
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TSPAN9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TSPAN9-IT1 Gene

3,149,797 bp from pter
3,151,476 bp from pter
1,680 bases
Plus strand

Genomic View for TSPAN9-IT1 Gene

Genes around TSPAN9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPAN9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPAN9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TSPAN9-IT1 Gene

Proteins for TSPAN9-IT1 Gene

Post-translational modifications for TSPAN9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPAN9-IT1 Gene

Domains & Families for TSPAN9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSPAN9-IT1 Gene

Function for TSPAN9-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPAN9-IT1 Gene

Localization for TSPAN9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSPAN9-IT1 Gene

Pathways & Interactions for TSPAN9-IT1 Gene

SuperPathways for TSPAN9-IT1 Gene

No Data Available

Interacting Proteins for TSPAN9-IT1 Gene

Gene Ontology (GO) - Biological Process for TSPAN9-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TSPAN9-IT1 Gene

Drugs & Compounds for TSPAN9-IT1 Gene

No Compound Related Data Available

Transcripts for TSPAN9-IT1 Gene

mRNA/cDNA for TSPAN9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN9-IT1 Gene

No ASD Table

Relevant External Links for TSPAN9-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TSPAN9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSPAN9-IT1 Gene

genes like me logo Genes that share expression patterns with TSPAN9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPAN9-IT1 Gene

Orthologs for TSPAN9-IT1 Gene

Evolution for TSPAN9-IT1 Gene

Gene Tree for TSPAN9-IT1 (if available)
Gene Tree for TSPAN9-IT1 (if available)

No data available for Orthologs for TSPAN9-IT1 Gene

Paralogs for TSPAN9-IT1 Gene

No data available for Paralogs for TSPAN9-IT1 Gene

Variants for TSPAN9-IT1 Gene

Relevant External Links for TSPAN9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TSPAN9-IT1 Gene

Disorders for TSPAN9-IT1 Gene

No disorders were found for TSPAN9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TSPAN9-IT1 Gene

Publications for TSPAN9-IT1 Gene

No publications were found for TSPAN9-IT1 Gene.

Products for TSPAN9-IT1 Gene

Sources for TSPAN9-IT1 Gene

Loading form....