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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TSPAN5 Gene

protein-coding   GIFtS: 50
GCID: GC04M099391

tetraspanin 5

(Previous name: transmembrane 4 superfamily member 9 )
(Previous symbol: TM4SF9)
 Explore 1 disease affiliated with
TSPAN5 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for TSPAN5    

Aliases
for TSPAN5 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Tetraspanin 51 2     NET42 5
Transmembrane 4 Superfamily Member 91 2 3     TSPAN-52
TM4SF91 2 3     Tetraspan 52
NET-41 2     Tetraspan TM4SF2
Tspan-51 3     Tetraspanin-51
Tetraspan NET-42 3     Transmembrane 4 Superfamily, Member 82

External Ids:    HGNC: 177531   Entrez Gene: 100982   Ensembl: ENSG000001687857   OMIM: 6131365   UniProtKB: P620793   

Export aliases for TSPAN5 gene to outside databases

Previous GC identifers: GC04M099751 GC04M099612 GC04M095128


Summaries
for TSPAN5 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for TSPAN5:
The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family.
Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains.
The proteins mediate signal transduction events that play a role in the regulation of cell development, activation,
growth and motility. (provided by RefSeq, Jul 2008)




Genomic Views
for TSPAN5 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_016354.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TSPAN5 gene promoter:
         NF-1   NF-1/L   Pbx1a   ATF-2   STAT5A   Nkx2-5   Gfi-1   FOXL1   GATA-6   Sox9   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: TSPAN5 promoter sequence
   Search SABiosciences Chromatin IP Primers for TSPAN5

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TSPAN5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q23   Ensembl cytogenetic band:  4q23   HGNC cytogenetic band: 4q22.3

TSPAN5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TSPAN5 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M099391:  view genomic region     (about GC identifiers)

Start:
 99,391,518 bp from pter      End:
 99,579,812 bp from pter
Size:
 188,295 bases      Orientation:
 minus strand

Proteins
for TSPAN5 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: TSN5_HUMAN, P62079 (See protein sequence)
Recommended Name: Tetraspanin-5  
Size: 268 amino acids; 30337 Da
Subcellular location: Membrane; Multi-pass membrane protein (Probable)
Secondary accessions: B2RDY2 O60628 O60746 Q6FHE5 Q9JLY1

Explore the universe of human proteins at neXtProt for TSPAN5: NX_P62079

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P62079

    • TSPAN5 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_005714.2  
    ENSEMBL proteins: 
     ENSP00000421808   ENSP00000307701   ENSP00000423916   ENSP00000422351   ENSP00000423504  
     ENSP00000426248   ENSP00000422548  

    Human Recombinant Protein Products: 
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    Novus Biologicals TSPAN5 Protein
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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for TSPAN5

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--


    TSPAN5 for ontologies           About GeneDecksing



    TSPAN5 Antibody Products: 
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    Uscn ELISAs and CLIAs for TSPAN5

    Protein Domains /
    Families
    for TSPAN5 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    TSPAN5 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR018499 Tetraspanin/Peripherin
     IPR018503 Tetraspanin_CS
     IPR000301 Tetraspanin
     IPR008952 Tetraspanin_EC2

    Graphical View of Domain Structure for InterPro Entry P62079

    ProtoNet protein and cluster: P62079

    1 Blocks protein family: IPB000301 Transmembrane four family signature

    UniProtKB/Swiss-Prot: TSN5_HUMAN, P62079
    Similarity: Belongs to the tetraspanin (TM4SF) family


    Function
    for TSPAN5 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    miRNA
    Products:            		 OriGene 3'-UTR Clone: TSPAN5
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TSPAN5
    8/36 QIAGEN miScript miRNA Assays for microRNAs that regulate TSPAN5 (see all 36):
    hsa-miR-513a-5p hsa-miR-15a hsa-miR-139-5p hsa-miR-3921 hsa-miR-218 hsa-miR-10b* hsa-miR-223 hsa-miR-424
    SwitchGear 3'UTR luciferase reporter plasmid: TSPAN5 3' UTR sequence
    Inhib. RNA
    Products:            		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TSPAN5 (see all 7)
    OriGene shRNA RFP: TSPAN5
    OriGene siRNA: TSPAN5
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TSPAN5

    Gene Editing
    Products:    		DNA2.0 Custom Protein Engineering Service for TSPAN5

    Clone
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    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TSPAN5 (see all 3)
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    Cell Line
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    Search LifeMap BioReagents cell lines for TSPAN5

    In Situ Assay
    Products:       
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    Pathways & Interactions
    for TSPAN5 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TSPAN5

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for TSPAN5 (ENSP000003077014) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Drugs & Compounds
    for TSPAN5 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TSPAN5
    Search CenterWatch for drugs/clinical trials and news about TSPAN5 / TSN5 

    Transcripts
    for TSPAN5 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for TSPAN5 gene: 
    NM_005723.3  

    Unigene Cluster for TSPAN5:

    Tetraspanin 5
    Hs.118118  [show with all ESTs]
    Unigene Representative Sequence: AK126702
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000508798 ENST00000305798(uc011cdz.2 uc003hub.3) ENST00000505184
    ENST00000511753 ENST00000515440 ENST00000509168 ENST00000515287 ENST00000511651
    ENST00000511800 ENST00000507167

    miRNA
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    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TSPAN5
    8/36 QIAGEN miScript miRNA Assays for microRNAs that regulate TSPAN5 (see all 36):
    hsa-miR-513a-5p hsa-miR-15a hsa-miR-139-5p hsa-miR-3921 hsa-miR-218 hsa-miR-10b* hsa-miR-223 hsa-miR-424
    SwitchGear 3'UTR luciferase reporter plasmid: TSPAN5 3' UTR sequence
    Inhib. RNA
    Products:             		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TSPAN5 (see all 7)
    OriGene shRNA RFP: TSPAN5
    OriGene siRNA: TSPAN5
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TSPAN5
    Clone
    Products:             		 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TSPAN5 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TSPAN5 (see all 2)
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    GenScript: all cDNA clones in your preferred vector: TSPAN5 (NM_005723)
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TSPAN5
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TSPAN5

    Additional cDNA sequence: 

    AF065389.1 AK055659.1 AK126702.1 AK295385.1 AK315723.1 BC009704.1 CR541809.1 CR541829.1 

    9 DOTS entries:

    DT.455194  DT.101964212  DT.97774343  DT.100813151  DT.97794070  DT.86853310  DT.86857926  DT.92433806 
    DT.95165914 

    24/255 AceView cDNA sequences (see all 255):

    N62391 H58194 AI474685 BU733932 AA769968 AI926095 BI819057 BF732739 
    AW086460 CA423785 AI494517 AI370751 BU618888 W72167 BF059737 BX101060 
    AI130031 AA253494 BF224008 AA580142 AI302454 BI488831 AF065389 CA418233 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN5    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
    SP1:                    -                                                   
    SP2:                    -           -     -                                 
    SP3:                    -     -                                             
    SP4:                                                                        


    ECgene alternative splicing isoforms for TSPAN5

    Expression
    for TSPAN5 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TSPAN5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAGAAGACAC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    TSPAN5 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    AdiposeVisceral White AdiposeAdipose
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See TSPAN5 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TSPAN5

    SOURCE GeneReport for Unigene cluster: Hs.118118
        SABiosciences Custom PCR Arrays for TSPAN5
    Primer
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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TSPAN5

    Orthologs
    for TSPAN5 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of animals.

    Orthologs for TSPAN5 gene from 6/17 species (see all 17)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    chicken
    (Gallus gallus)    		 Aves TSPAN51 tetraspanin 5 88.93(n)
    98.76(a)    		   422702  XM_420654.3  XP_420654.3 
    lizard
    (Anolis carolinensis)    		 Reptilia TSPAN56
    		 --
    		 98(a)
    		 1 ↔ 1
    		 GL343307.1(1294215-1309360)
    African clawed frog
    (Xenopus laevis)    		 Amphibia Xl.218922 Xenopus laevis, Similar to transmembrane 4 superfamily more 79.73(n)    BC041304.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii tspan51 tetraspanin 5 79.15(n)
    91.39(a)    		   450026  NM_001006047.1  NP_001006047.1 
    fruit fly
    (Drosophila melanogaster)    		 Insecta Tsp26A1 Tetraspanin 26A 56.12(n)
    48.05(a)    		   33838  NM_001103623.3  NP_001097093.1 
    worm
    (Caenorhabditis elegans)    		 Secernentea tsp-121 Protein TSP-12 50.84(n)
    47.1(a)    		   177890  NM_069452.3  NP_501853.1 


    ENSEMBL Gene Tree for TSPAN5 (if available)
    TreeFam Gene Tree for TSPAN5 (if available) 

    Paralogs
    for TSPAN5 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TSPAN5 gene
    TSPAN172  TSPAN152  TSPAN332  TSPAN142  
    18/22 SIMAP similar genes for TSPAN5 using alignment to 7 protein entries:     TSN5_HUMAN (see all proteins) (see all similar genes):
    TM4SF9    TM4SF17    TSPAN17    TSPAN14    TSPAN33    CD9
    BTCC-1    TSPAN18    TSPAN15    TSPAN4    CD151    CD82
    CD81    CD63    CD53    TSPAN10    TM4SF2    TSPAN6

    TSPAN5 for paralogs           About GeneDecksing



    Genomic Variants
    for TSPAN5 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TSPAN5
    DNA2.0 Custom Variant and Variant Library Synthesis for TSPAN5

    Disorders / Diseases
    for TSPAN5 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    TSPAN5 for disorders           About GeneDecksing

    OMIM gene information: 613136    OMIM disorders: --

    1 disease for TSPAN5:    About MalaCards
    intracranial aneurysm

    1 disease from the University of Copenhagen DISEASES database for TSPAN5:
    Intracranial aneurysm
    Human Genome Epidemiology (HuGE) Navigator: TSPAN5 (1 document)

    Export disorders for TSPAN5 gene to outside databases

    Publications
    for TSPAN5 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TSPAN5 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with TSPAN5)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Sequences and expression of six new members of the tetraspanin/TM4SF family. (PubMed id 9714763)1, 2 Todd S.C.... Levy S. (1998)
    4. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    5. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
    6. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    7. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    9. Complexes of tetraspanins with integrins: more than meets the eye. (PubMed id 11739647)1 Berditchevski F. (2001)
    10. Sequence and expression of seven new tetraspans. (PubMed id 10719184)1 Serru V.... Rubinstein E. (2000)

    External Searches for TSPAN5 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing TSPAN5 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10098 HGNC: 17753 AceView: TM4SF9 Ensembl:ENSG00000168785 euGenes: HUgn10098
    ECgene: TSPAN5 H-InvDB: TSPAN5

    Other Databases showing TSPAN5 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing TSPAN5 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TSPAN5 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for TSPAN5 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
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     TSPAN5 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for TSPAN5
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