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Aliases for TSPAN32 Gene

Aliases for TSPAN32 Gene

  • Tetraspanin 32 2 3
  • PHEMX 3 4 6
  • TSSC6 3 4 6
  • Protein Phemx 3 4
  • Tspan-32 3 4
  • Tumor-Suppressing Subchromosomal Transferable Fragment CDNA 6 3
  • Tumor-Suppressing Subtransferable Candidate 6 3
  • Pan-Hematopoietic Expression Protein 3
  • Pan-Hematopoietic Expression 2
  • Tumor-Suppressing STF CDNA 6 3
  • Tetraspanin-32 3
  • ART1 3
  • PHMX 3

External Ids for TSPAN32 Gene

Previous Symbols for TSPAN32 Gene

  • TSSC6
  • PHEMX

Summaries for TSPAN32 Gene

Entrez Gene Summary for TSPAN32 Gene

  • This gene, which is a member of the tetraspanin superfamily, is one of several tumor-suppressing subtransferable fragments located in the imprinted gene domain of chromosome 11p15.5, an important tumor-suppressor gene region. Alterations in this region have been associated with Beckwith-Wiedemann syndrome, Wilms tumor, rhabdomyosarcoma, adrenocortical carcinoma, and lung, ovarian and breast cancers. This gene is located among several imprinted genes; however, this gene, as well as the tumor-suppressing subchromosomal transferable fragment 4, escapes imprinting. This gene may play a role in malignancies and diseases that involve this region, and it is also involved in hematopoietic cell function. Alternatively spliced transcript variants have been described, but their biological validity has not been determined. [provided by RefSeq, Jul 2008]

GeneCards Summary for TSPAN32 Gene

TSPAN32 (Tetraspanin 32) is a Protein Coding gene. Diseases associated with TSPAN32 include malaria and wilms tumor. Among its related pathways are Nicotinate and nicotinamide metabolism and Defensins.

Gene Wiki entry for TSPAN32 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN32 Gene

Genomics for TSPAN32 Gene

Genomic Location for TSPAN32 Gene

Start:
2,301,997 bp from pter
End:
2,318,200 bp from pter
Size:
16,204 bases
Orientation:
Plus strand

Genomic View for TSPAN32 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSPAN32 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPAN32 Gene

Regulatory Elements for TSPAN32 Gene

Proteins for TSPAN32 Gene

  • Protein details for TSPAN32 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96QS1-TSN32_HUMAN
    Recommended name:
    Tetraspanin-32
    Protein Accession:
    Q96QS1
    Secondary Accessions:
    • Q96KX4
    • Q9HC50
    • Q9HC51
    • Q9Y5U1

    Protein attributes for TSPAN32 Gene

    Size:
    320 amino acids
    Molecular mass:
    34631 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TSPAN32 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TSPAN32 Gene

Proteomics data for TSPAN32 Gene at MOPED

Post-translational modifications for TSPAN32 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPAN32 Gene

Domains for TSPAN32 Gene

Gene Families for TSPAN32 Gene

HGNC:

Protein Domains for TSPAN32 Gene

UniProtKB/Swiss-Prot:

TSN32_HUMAN
Family:
  • Belongs to the tetraspanin (TM4SF) family.:
    • Q96QS1
genes like me logo Genes that share domains with TSPAN32: view

Function for TSPAN32 Gene

Gene Ontology (GO) - Molecular Function for TSPAN32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with TSPAN32: view

Phenotypes for TSPAN32 Gene

genes like me logo Genes that share phenotypes with TSPAN32: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TSPAN32 Gene

Localization for TSPAN32 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TSPAN32 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TSPAN32 Gene COMPARTMENTS Subcellular localization image for TSPAN32 gene
Compartment Confidence
extracellular 3
plasma membrane 2
golgi apparatus 1
nucleus 1

Gene Ontology (GO) - Cellular Components for TSPAN32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0009986 cell surface IEA --
GO:0016021 integral component of membrane --
GO:0070442 integrin alphaIIb-beta3 complex IEA --
genes like me logo Genes that share ontologies with TSPAN32: view

Pathways for TSPAN32 Gene

genes like me logo Genes that share pathways with TSPAN32: view

Pathways by source for TSPAN32 Gene

1 GeneGo (Thomson Reuters Life Sciences Research) pathway for TSPAN32 Gene
2 Reactome pathways for TSPAN32 Gene

Interacting Proteins for TSPAN32 Gene

Gene Ontology (GO) - Biological Process for TSPAN32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007010 cytoskeleton organization IEA --
GO:0007229 integrin-mediated signaling pathway IEA --
GO:0007267 cell-cell signaling TAS 10950922
GO:0007596 blood coagulation --
GO:0007599 hemostasis --
genes like me logo Genes that share ontologies with TSPAN32: view

Compounds for TSPAN32 Gene

(7) Novoseek inferred chemical compound relationships for TSPAN32 Gene

Compound -log(P) Hits PubMed IDs
ganglioside 44.3 4
tyrosine 31 5
lipid 27.3 9
phosphatidylinositol 23.4 2
cysteine 23.2 5
genes like me logo Genes that share compounds with TSPAN32: view

Transcripts for TSPAN32 Gene

Unigene Clusters for TSPAN32 Gene

Tetraspanin 32:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN32 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b · 14c
SP1: - - - - - - - -
SP2: - - - - - - - - -
SP3: - - - - - -
SP4: - - - - -
SP5: - - - - - -
SP6: - - - - - -
SP7: - - - - - -
SP8: - - - - - - - -
SP9: - - - -
SP10: - - - -
SP11: - - - - - -
SP12: - -

Relevant External Links for TSPAN32 Gene

GeneLoc Exon Structure for
TSPAN32
ECgene alternative splicing isoforms for
TSPAN32

Expression for TSPAN32 Gene

mRNA expression in normal human tissues for TSPAN32 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TSPAN32 Gene

This gene is overexpressed in Whole Blood (20.8), Heart - Left Ventricle (5.0), and Spleen (4.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TSPAN32 Gene

SOURCE GeneReport for Unigene cluster for TSPAN32 Gene Hs.271954

mRNA Expression by UniProt/SwissProt for TSPAN32 Gene

Q96QS1-TSN32_HUMAN
Tissue specificity: Expressed ubiquitously at low levels. High levels of expression are confined to hematopoietic tissues including peripheral blood leukocytes, thymus and spleen.
genes like me logo Genes that share expressions with TSPAN32: view

Orthologs for TSPAN32 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TSPAN32 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSPAN32 36
  • 93.65 (n)
  • 90.29 (a)
cow
(Bos Taurus)
Mammalia TSPAN32 37
  • 63 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TSPAN32 36
  • 77.58 (n)
  • 67.25 (a)
TSPAN32 37
  • 67 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tspan32 36
  • 76.02 (n)
  • 64.03 (a)
Tspan32 16
Tspan32 37
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TSPAN32 37
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Phemx 36
  • 76.32 (n)
  • 64.68 (a)
chicken
(Gallus gallus)
Aves TSPAN32 36
  • 60.54 (n)
  • 46.58 (a)
TSPAN32 37
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TSPAN32 37
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tspan32 36
  • 46.58 (n)
  • 32.22 (a)
Species with no ortholog for TSPAN32:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TSPAN32 Gene

ENSEMBL:
Gene Tree for TSPAN32 (if available)
TreeFam:
Gene Tree for TSPAN32 (if available)

Paralogs for TSPAN32 Gene

Selected SIMAP similar genes for TSPAN32 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with TSPAN32: view

No data available for Paralogs for TSPAN32 Gene

Variants for TSPAN32 Gene

Sequence variations from dbSNP and Humsavar for TSPAN32 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs756925 -- 2,307,718(+) AGTGC(C/T)GGGGG intron-variant
rs756926 -- 2,307,848(+) GAAAG(G/T)GAGGT intron-variant
rs756927 -- 2,307,889(+) GGCCA(C/T)AGCAT intron-variant
rs800139 -- 2,311,894(+) CCGTG(A/G)AGAGC intron-variant
rs800140 -- 2,312,445(+) AGGAC(A/G)AGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSPAN32 Gene

Variant ID Type Subtype PubMed ID
nsv467645 CNV Gain 19166990
nsv896776 CNV Loss 21882294
nsv896801 CNV Loss 21882294
dgv999n71 CNV Loss 21882294
nsv896804 CNV Loss 21882294
nsv896805 CNV Gain+Loss 21882294
nsv896806 CNV Loss 21882294
nsv469928 CNV Loss 18288195
esv2744003 CNV Deletion 23290073
esv2744004 CNV Deletion 23290073
esv2744005 CNV Deletion 23290073
esv1338872 CNV Deletion 17803354

Relevant External Links for TSPAN32 Gene

HapMap Linkage Disequilibrium report
TSPAN32

Disorders for TSPAN32 Gene

(1) University of Copenhagen DISEASES for TSPAN32 Gene

(24) Novoseek inferred disease relationships for TSPAN32 Gene

Disease -log(P) Hits PubMed IDs
metastasis 52.3 41
hepatitis c 39.2 10
cancer 37.4 16
pathological processes 32.1 4
tumors 30.6 23
genes like me logo Genes that share disorders with TSPAN32: view

No data available for UniProtKB/Swiss-Prot for TSPAN32 Gene

Publications for TSPAN32 Gene

  1. Two novel genes in the center of the 11p15 imprinted domain escape genomic imprinting. (PMID: 10072438) Lee M.P. … Feinberg A.P. (Hum. Mol. Genet. 1999) 2 3 4 23
  2. Phemx, a novel mouse gene expressed in hematopoietic cells maps to the imprinted cluster on distal chromosome 7. (PMID: 10950922) Nicholson R.H. … Ko M.S.H. (Genomics 2000) 2 3 4 23
  3. Molecular characterisation of mouse and human TSSC6: evidence that TSSC6 is a genuine member of the tetraspanin superfamily and is expressed specifically in haematopoietic organs. (PMID: 11718897) Robb L. … Wright M.D. (Biochim. Biophys. Acta 2001) 3 4 23
  4. An unappreciated role for RNA surveillance. (PMID: 14759258) Hillman R.T. … Brenner S.E. (Genome Biol. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for TSPAN32 Gene

Sources for TSPAN32 Gene

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