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Aliases for TSPAN18 Gene

Aliases for TSPAN18 Gene

  • Tetraspanin 18 2 3
  • Tspan-18 3 4
  • TSPAN 3

External Ids for TSPAN18 Gene

Previous GeneCards Identifiers for TSPAN18 Gene

  • GC11P044838
  • GC11P044496

Summaries for TSPAN18 Gene

GeneCards Summary for TSPAN18 Gene

TSPAN18 (Tetraspanin 18) is a Protein Coding gene. Diseases associated with TSPAN18 include barrett esophagus/esophageal adenocarcinoma. An important paralog of this gene is TSPAN9.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN18 Gene

Genomics for TSPAN18 Gene

Regulatory Elements for TSPAN18 Gene

Genomic Location for TSPAN18 Gene

Chromosome:
11
Start:
44,726,465 bp from pter
End:
44,932,427 bp from pter
Size:
205,963 bases
Orientation:
Plus strand

Genomic View for TSPAN18 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSPAN18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPAN18 Gene

Proteins for TSPAN18 Gene

  • Protein details for TSPAN18 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96SJ8-TSN18_HUMAN
    Recommended name:
    Tetraspanin-18
    Protein Accession:
    Q96SJ8
    Secondary Accessions:
    • Q6UY44
    • Q8NBI9

    Protein attributes for TSPAN18 Gene

    Size:
    248 amino acids
    Molecular mass:
    27710 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC11690.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for TSPAN18 Gene

Proteomics data for TSPAN18 Gene at MOPED

Post-translational modifications for TSPAN18 Gene

  • Glycosylation at Asn 111 and Asn 129

No data available for DME Specific Peptides for TSPAN18 Gene

Domains & Families for TSPAN18 Gene

Gene Families for TSPAN18 Gene

Suggested Antigen Peptide Sequences for TSPAN18 Gene

Graphical View of Domain Structure for InterPro Entry

Q96SJ8

UniProtKB/Swiss-Prot:

TSN18_HUMAN :
  • Belongs to the tetraspanin (TM4SF) family.
Family:
  • Belongs to the tetraspanin (TM4SF) family.
genes like me logo Genes that share domains with TSPAN18: view

Function for TSPAN18 Gene

Phenotypes for TSPAN18 Gene

GenomeRNAi human phenotypes for TSPAN18:
genes like me logo Genes that share phenotypes with TSPAN18: view

Animal Model Products

CRISPR Products

miRNA for TSPAN18 Gene

miRTarBase miRNAs that target TSPAN18

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TSPAN18

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for TSPAN18 Gene

Localization for TSPAN18 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TSPAN18 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TSPAN18 Gene COMPARTMENTS Subcellular localization image for TSPAN18 gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for TSPAN18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IBA --
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with TSPAN18: view

Pathways & Interactions for TSPAN18 Gene

SuperPathways for TSPAN18 Gene

No Data Available

Interacting Proteins for TSPAN18 Gene

Gene Ontology (GO) - Biological Process for TSPAN18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007166 cell surface receptor signaling pathway IBA --
genes like me logo Genes that share ontologies with TSPAN18: view

No data available for Pathways by source and SIGNOR curated interactions for TSPAN18 Gene

Drugs & Compounds for TSPAN18 Gene

No Compound Related Data Available

Transcripts for TSPAN18 Gene

Unigene Clusters for TSPAN18 Gene

Tetraspanin 18:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TSPAN18

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN18 Gene

No ASD Table

Relevant External Links for TSPAN18 Gene

GeneLoc Exon Structure for
TSPAN18
ECgene alternative splicing isoforms for
TSPAN18

Expression for TSPAN18 Gene

mRNA expression in normal human tissues for TSPAN18 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TSPAN18 Gene

This gene is overexpressed in Heart - Atrial Appendage (x5.7) and Heart - Left Ventricle (x4.2).

Protein differential expression in normal tissues from HIPED for TSPAN18 Gene

This gene is overexpressed in Fetal Brain (20.0), Cerebral cortex (6.9), and Peripheral blood mononuclear cells (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TSPAN18 Gene



SOURCE GeneReport for Unigene cluster for TSPAN18 Gene Hs.385634

genes like me logo Genes that share expression patterns with TSPAN18: view

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TSPAN18 Gene

Orthologs for TSPAN18 Gene

This gene was present in the common ancestor of animals.

Orthologs for TSPAN18 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TSPAN18 35
  • 92.98 (n)
  • 96.76 (a)
TSPAN18 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TSPAN18 35
  • 91.26 (n)
  • 95.56 (a)
TSPAN18 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tspan18 35
  • 87.1 (n)
  • 90.73 (a)
Tspan18 16
Tspan18 36
  • 91 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TSPAN18 35
  • 99.6 (n)
  • 100 (a)
TSPAN18 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tspan18 35
  • 87.1 (n)
  • 90.32 (a)
oppossum
(Monodelphis domestica)
Mammalia TSPAN18 36
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TSPAN18 36
  • 87 (a)
OneToOne
chicken
(Gallus gallus)
Aves TSPAN18 35
  • 76.25 (n)
  • 81.38 (a)
TSPAN18 36
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TSPAN18 36
  • 83 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.15520 35
tspan18 35
  • 71.52 (n)
  • 72.87 (a)
African clawed frog
(Xenopus laevis)
Amphibia LOC398586 35
zebrafish
(Danio rerio)
Actinopterygii tspan18b 35
  • 73.44 (n)
  • 72.76 (a)
tspan18a 36
  • 67 (a)
OneToMany
tspan18b 36
  • 69 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Tsp66E 36
  • 27 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea tsp-11 36
  • 20 (a)
ManyToMany
tsp-13 36
  • 15 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 37 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
CSA.10478 36
  • 29 (a)
ManyToMany
CSA.10827 36
  • 36 (a)
ManyToMany
CSA.4407 36
  • 31 (a)
ManyToMany
CSA.5127 36
  • 41 (a)
ManyToMany
CSA.8143 36
  • 35 (a)
ManyToMany
Species with no ortholog for TSPAN18:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TSPAN18 Gene

ENSEMBL:
Gene Tree for TSPAN18 (if available)
TreeFam:
Gene Tree for TSPAN18 (if available)

Paralogs for TSPAN18 Gene

Paralogs for TSPAN18 Gene

genes like me logo Genes that share paralogs with TSPAN18: view

Variants for TSPAN18 Gene

Sequence variations from dbSNP and Humsavar for TSPAN18 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs2911 -- 44,930,280(-) AGGTA(A/T)GCAAG utr-variant-3-prime
rs704662 -- 44,775,936(-) TTTCT(A/G)CTTAA intron-variant
rs704663 -- 44,755,012(+) GTGCT(A/G)TCTGC intron-variant
rs704664 -- 44,765,651(+) AGCAC(C/T)GAGTA intron-variant
rs704665 -- 44,796,570(-) CTGGG(C/T)GCTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSPAN18 Gene

Variant ID Type Subtype PubMed ID
nsv832140 CNV Loss 17160897
esv28960 CNV Gain 19812545
nsv304 CNV Loss 18451855
nsv510252 CNV Loss 20534489
esv2744420 CNV Deletion 23290073

Variation tolerance for TSPAN18 Gene

Residual Variation Intolerance Score: 55.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TSPAN18 Gene

HapMap Linkage Disequilibrium report
TSPAN18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSPAN18 Gene

Disorders for TSPAN18 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TSPAN18 Gene - From: DISEASES

Disorder Aliases PubMed IDs
barrett esophagus/esophageal adenocarcinoma
  • barrett's esophagus
- elite association

Relevant External Links for TSPAN18

Genetic Association Database (GAD)
TSPAN18
Human Genome Epidemiology (HuGE) Navigator
TSPAN18
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSPAN18
genes like me logo Genes that share disorders with TSPAN18: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TSPAN18 Gene

Publications for TSPAN18 Gene

  1. Specific tetraspanin functions. (PMID: 11756464) Hemler M.E. (J. Cell Biol. 2001) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. Replication study confirms link between TSPAN18 mutation and schizophrenia in Han Chinese. (PMID: 23505562) Yuan J. … Shugart Y.Y. (PLoS ONE 2013) 67
  4. The global gene-expression profiles of U-937 human macrophages treated with Tat peptide and Tat-FITC conjugate. (PMID: 22632162) Lin C.W. … Jan M.S. (J Drug Target 2012) 67
  5. Genome-wide association study identifies a susceptibility locus for schizophrenia in Han Chinese at 11p11.2. (PMID: 22037552) Yue W.H. … Zhang D. (Nat. Genet. 2011) 67

Products for TSPAN18 Gene

Sources for TSPAN18 Gene

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